Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000225-TA|BGIBMGA000225-PA|undefined
(124 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g26030.2 68415.m03125 F-box family protein contains F-box dom... 28 2.1
At2g26030.1 68415.m03126 F-box family protein contains F-box dom... 28 2.1
At3g27330.1 68416.m03418 zinc finger (C3HC4-type RING finger) fa... 27 3.7
At4g32300.1 68417.m04596 lectin protein kinase family protein co... 27 4.8
At2g11010.1 68415.m01178 hypothetical protein 26 6.4
At4g04010.1 68417.m00571 Ulp1 protease family protein contains P... 26 8.4
At3g44500.1 68416.m04783 Ulp1 protease family protein similar to... 26 8.4
At3g32900.1 68416.m04166 Ulp1 protease family protein similar to... 26 8.4
At3g30440.1 68416.m03851 Ulp1 protease family protein contains P... 26 8.4
At3g25970.1 68416.m03236 pentatricopeptide (PPR) repeat-containi... 26 8.4
At1g32840.1 68414.m04047 Ulp1 protease family protein similar to... 26 8.4
>At2g26030.2 68415.m03125 F-box family protein contains F-box
domain Pfam:PF00646
Length = 369
Score = 27.9 bits (59), Expect = 2.1
Identities = 13/39 (33%), Positives = 23/39 (58%)
Query: 27 RKRNKREVPFTHDEKRIAGCLLQCVYRKVKAVDGFGFPT 65
RK + +T+D+ R+AG ++ V R ++ +D GF T
Sbjct: 2 RKFKLKYDEYTYDDDRLAGWVVTTVDRGIQHLDAKGFET 40
>At2g26030.1 68415.m03126 F-box family protein contains F-box domain
Pfam:PF00646
Length = 442
Score = 27.9 bits (59), Expect = 2.1
Identities = 13/39 (33%), Positives = 23/39 (58%)
Query: 27 RKRNKREVPFTHDEKRIAGCLLQCVYRKVKAVDGFGFPT 65
RK + +T+D+ R+AG ++ V R ++ +D GF T
Sbjct: 75 RKFKLKYDEYTYDDDRLAGWVVTTVDRGIQHLDAKGFET 113
>At3g27330.1 68416.m03418 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profiles: PF00097 zinc
finger, C3HC4 type (RING finger), PF01697 Domain of
unknown function
Length = 913
Score = 27.1 bits (57), Expect = 3.7
Identities = 15/40 (37%), Positives = 24/40 (60%), Gaps = 1/40 (2%)
Query: 5 IVVLSLTEALDVIKEEHTMPAERKRNKREVPF-THDEKRI 43
+V L + + VI+ E AE+K+ KRE+ T +EK+I
Sbjct: 660 LVPLPVIDLDKVIRHEEEKSAEKKKKKREMETETKEEKKI 699
>At4g32300.1 68417.m04596 lectin protein kinase family protein
contains Pfam domains, PF01453: Lectin (probable mannose
binding) and PF00069: Protein kinase domain
Length = 821
Score = 26.6 bits (56), Expect = 4.8
Identities = 13/42 (30%), Positives = 21/42 (50%)
Query: 60 GFGFPTLEGLVGLYSDGVNERGYFMAVLEASRECLMKNHDKF 101
GFGF T + V L++ + + + A+R + N DKF
Sbjct: 56 GFGFVTTQDSVTLFTLSIIHKSSTKLIWSANRASPVSNSDKF 97
>At2g11010.1 68415.m01178 hypothetical protein
Length = 693
Score = 26.2 bits (55), Expect = 6.4
Identities = 23/84 (27%), Positives = 33/84 (39%), Gaps = 3/84 (3%)
Query: 12 EALDVIKEEHTMPAE-RKRNKREVPFTHDEKRIAGCLLQCVYRKVKAVDGFGFPTLEGLV 70
+ L+ +KE +P E +K P E +G CVY G FP E L+
Sbjct: 101 QCLERLKELCRIPPEIMTESKMHGPMESPEDHRSGYF--CVYEIYFKGCGLTFPFPEALL 158
Query: 71 GLYSDGVNERGYFMAVLEASRECL 94
+ GYF A A+R +
Sbjct: 159 LSVRSSSKKTGYFSAYPNANRNLI 182
>At4g04010.1 68417.m00571 Ulp1 protease family protein contains Pfam
profile PF02902: Ulp1 protease family, C-terminal
catalytic domain; similar to At1g32840, At2g06430,
At2g15140, At2g04980, At2g14130, At3g44500, At2g15190,
At3g47260, At5g34900, At3g29210, At2g02210, At3g32900
Length = 836
Score = 25.8 bits (54), Expect = 8.4
Identities = 12/32 (37%), Positives = 17/32 (53%)
Query: 12 EALDVIKEEHTMPAERKRNKREVPFTHDEKRI 43
E+LDV K++ + R NKR P H E +
Sbjct: 475 ESLDVQKDKKRVSRGRNENKRVKPSVHAEDNL 506
>At3g44500.1 68416.m04783 Ulp1 protease family protein similar to
At1g32840, At4g04010, At2g06430, At2g15140, At2g04980,
At2g14130, At2g15190, At3g47260, At5g34900, At3g29210,
At2g02210, At3g32900
Length = 805
Score = 25.8 bits (54), Expect = 8.4
Identities = 12/32 (37%), Positives = 17/32 (53%)
Query: 12 EALDVIKEEHTMPAERKRNKREVPFTHDEKRI 43
E+LDV K++ + R NKR P H E +
Sbjct: 471 ESLDVQKDKKRVSRGRNENKRVKPSVHAEDNL 502
>At3g32900.1 68416.m04166 Ulp1 protease family protein similar to
At1g32840, At4g04010, At2g06430, At2g15140, At2g04980,
At2g14130, At3g44500, At2g15190, At3g47260, At5g34900,
At3g29210, At2g02210
Length = 654
Score = 25.8 bits (54), Expect = 8.4
Identities = 12/32 (37%), Positives = 17/32 (53%)
Query: 12 EALDVIKEEHTMPAERKRNKREVPFTHDEKRI 43
E+LDV K++ + R NKR P H E +
Sbjct: 298 ESLDVQKDKKRVSRGRNENKRVKPSVHAEDNL 329
>At3g30440.1 68416.m03851 Ulp1 protease family protein contains Pfam
profile PF02902: Ulp1 protease family, C-terminal
catalytic domain
Length = 601
Score = 25.8 bits (54), Expect = 8.4
Identities = 12/32 (37%), Positives = 17/32 (53%)
Query: 12 EALDVIKEEHTMPAERKRNKREVPFTHDEKRI 43
E+LDV K++ + R NKR P H E +
Sbjct: 263 ESLDVQKDKKRVSRGRNENKRVKPSVHAEDNL 294
>At3g25970.1 68416.m03236 pentatricopeptide (PPR)
repeat-containing protein contains INTERPRO:IPR002885
PPR repeats
Length = 646
Score = 25.8 bits (54), Expect = 8.4
Identities = 15/51 (29%), Positives = 26/51 (50%), Gaps = 2/51 (3%)
Query: 44 AGCLLQCVYRKVKAVDGFGFP-TLEGLVGLYSDGVNERGYFMAVLEASREC 93
A CL C+ R VDG+ F L+G+ + + E+ + + V++ EC
Sbjct: 30 AWCLFTCMKRSGSDVDGYSFSRLLKGIASVKRFDLGEQVHGL-VIKGGYEC 79
>At1g32840.1 68414.m04047 Ulp1 protease family protein similar to
At4g04010, At2g06430, At2g15140, At2g04980, At2g14130,
At3g44500, At2g15190, At3g47260, At5g34900, At3g29210,
At2g02210, At3g32900
Length = 611
Score = 25.8 bits (54), Expect = 8.4
Identities = 12/32 (37%), Positives = 17/32 (53%)
Query: 12 EALDVIKEEHTMPAERKRNKREVPFTHDEKRI 43
E+LDV K++ + R NKR P H E +
Sbjct: 258 ESLDVQKDKKRVSRGRNENKRVKPSVHAEDNL 289
Database: arabidopsis
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.322 0.137 0.405
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,961,193
Number of Sequences: 28952
Number of extensions: 111429
Number of successful extensions: 238
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 230
Number of HSP's gapped (non-prelim): 11
length of query: 124
length of database: 12,070,560
effective HSP length: 73
effective length of query: 51
effective length of database: 9,957,064
effective search space: 507810264
effective search space used: 507810264
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 54 (25.8 bits)
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