GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000225-TA|BGIBMGA000225-PA|undefined
         (124 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1F3.03 |||Lgl family protein|Schizosaccharomyces pombe|chr 1...    25   4.6  
SPBC18E5.10 |||iron sulfur cluster assembly protein |Schizosacch...    25   4.6  
SPAC1687.10 |mcp1||sequence orphan|Schizosaccharomyces pombe|chr...    24   6.1  

>SPAC1F3.03 |||Lgl family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1004

 Score = 24.6 bits (51), Expect = 4.6
 Identities = 18/56 (32%), Positives = 25/56 (44%), Gaps = 1/56 (1%)

Query: 65  TLEGLVGLYSDGVNERGYFMAVLEASRECLMKNHDKFSRTTPMGN-TTAMQSDLNN 119
           T  G+  L+    +  G F A  E+SR+  +KN  K    T  G   TA  S L +
Sbjct: 669 TYRGMTLLFRIDPSSSGRFSAYFESSRQLDIKNIYKICSLTQDGQIATATGSSLQS 724


>SPBC18E5.10 |||iron sulfur cluster assembly protein
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 452

 Score = 24.6 bits (51), Expect = 4.6
 Identities = 10/21 (47%), Positives = 14/21 (66%)

Query: 61  FGFPTLEGLVGLYSDGVNERG 81
           +GFPT E ++ LY    +ERG
Sbjct: 84  YGFPTGEKMLSLYKATSSERG 104


>SPAC1687.10 |mcp1||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 661

 Score = 24.2 bits (50), Expect = 6.1
 Identities = 10/21 (47%), Positives = 12/21 (57%)

Query: 86  VLEASRECLMKNHDKFSRTTP 106
           V E S  CL KNH K +  +P
Sbjct: 488 VRETSSGCLFKNHSKSNTLSP 508


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.322    0.137    0.405 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 571,439
Number of Sequences: 5004
Number of extensions: 20887
Number of successful extensions: 42
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 40
Number of HSP's gapped (non-prelim): 3
length of query: 124
length of database: 2,362,478
effective HSP length: 65
effective length of query: 59
effective length of database: 2,037,218
effective search space: 120195862
effective search space used: 120195862
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 49 (23.8 bits)