Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000225-TA|BGIBMGA000225-PA|undefined
(124 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_06_0092 + 19973364-19975983,19976272-19976648 29 1.1
08_01_0868 - 8466365-8466860,8467124-8467140 28 2.5
04_04_0522 - 25887116-25887152,25887658-25887798,25887896-258880... 27 3.3
10_08_0360 - 17172979-17172996,17173631-17173924,17174035-17174256 27 5.7
11_04_0029 + 12477731-12477921,12477936-12478065,12478071-12478955 26 7.5
06_03_0942 - 26185898-26185932,26186004-26186379,26186473-261866... 26 7.5
05_03_0212 + 10260690-10261272,10261921-10262435,10262446-102625... 26 7.5
03_06_0558 - 34710345-34710515,34710798-34710956,34711035-347111... 26 7.5
03_01_0059 + 484305-484617,484919-485406,485608-486092,486185-48... 26 7.5
10_08_0268 - 16347683-16349089 26 10.0
05_04_0308 - 20081366-20082404,20082702-20083078,20084293-200846... 26 10.0
02_02_0536 + 11304298-11304400,11304731-11305797,11306026-113064... 26 10.0
01_01_1116 + 8839946-8840048,8840142-8842064,8842192-8842307,884... 26 10.0
>11_06_0092 + 19973364-19975983,19976272-19976648
Length = 998
Score = 29.1 bits (62), Expect = 1.1
Identities = 21/68 (30%), Positives = 32/68 (47%), Gaps = 3/68 (4%)
Query: 1 MIICIVVLSLTEALDVIKEEHTMPAERKRNKREVPFTHDEKRIAGCLLQCVYRKVKAVDG 60
+++ +VV+ L L V + + KR K+EVP T + G + + VKA DG
Sbjct: 627 ILLLVVVICLVSTLAVFSLLYMLLTCHKRRKKEVPAT---TSMQGHPMITYKQLVKATDG 683
Query: 61 FGFPTLEG 68
F L G
Sbjct: 684 FSSSHLLG 691
>08_01_0868 - 8466365-8466860,8467124-8467140
Length = 170
Score = 27.9 bits (59), Expect = 2.5
Identities = 17/52 (32%), Positives = 25/52 (48%), Gaps = 1/52 (1%)
Query: 23 MPAERKRNKREVPFTHDEKR-IAGCLLQCVYRKVKAVDGFGFPTLEGLVGLY 73
+P E+ + R V H KR + LLQ VY + GF P + L+G +
Sbjct: 2 VPFEKDQKDRLVSIWHFRKRNVPDLLLQEVYESICDGTGFAGPVWDHLLGYW 53
>04_04_0522 -
25887116-25887152,25887658-25887798,25887896-25888007,
25888416-25888530
Length = 134
Score = 27.5 bits (58), Expect = 3.3
Identities = 11/26 (42%), Positives = 16/26 (61%)
Query: 93 CLMKNHDKFSRTTPMGNTTAMQSDLN 118
CLM NH+ FS++ + N+T S N
Sbjct: 95 CLMLNHEGFSKSWKLSNSTRQSSCRN 120
>10_08_0360 - 17172979-17172996,17173631-17173924,17174035-17174256
Length = 177
Score = 26.6 bits (56), Expect = 5.7
Identities = 13/21 (61%), Positives = 13/21 (61%)
Query: 44 AGCLLQCVYRKVKAVDGFGFP 64
AG LL C V AVDG GFP
Sbjct: 102 AGTLLLCGRDSVAAVDGGGFP 122
>11_04_0029 + 12477731-12477921,12477936-12478065,12478071-12478955
Length = 401
Score = 26.2 bits (55), Expect = 7.5
Identities = 11/25 (44%), Positives = 15/25 (60%)
Query: 24 PAERKRNKREVPFTHDEKRIAGCLL 48
P+ RKR K+ PF + R +G LL
Sbjct: 263 PSPRKRGKKRTPFVDSQVRRSGRLL 287
>06_03_0942 -
26185898-26185932,26186004-26186379,26186473-26186614,
26186694-26186820,26186870-26186927,26187520-26187551,
26187848-26188454
Length = 458
Score = 26.2 bits (55), Expect = 7.5
Identities = 12/40 (30%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
Query: 64 PTLEGLVGLYSDGVNERGYFMAVLEASRECLMKNHDKFSR 103
PTL+ ++ + S + G F ++ + M NHD+F R
Sbjct: 209 PTLDKILAM-SSSMMRSGVFQFMMTETDSLRMSNHDRFHR 247
>05_03_0212 +
10260690-10261272,10261921-10262435,10262446-10262569,
10262840-10263042,10263169-10263240,10264905-10265007,
10265350-10265582
Length = 610
Score = 26.2 bits (55), Expect = 7.5
Identities = 11/25 (44%), Positives = 15/25 (60%)
Query: 24 PAERKRNKREVPFTHDEKRIAGCLL 48
P+ RKR K+ PF + R +G LL
Sbjct: 417 PSPRKRGKKRTPFVDSQVRRSGRLL 441
>03_06_0558 -
34710345-34710515,34710798-34710956,34711035-34711146,
34711293-34711465,34711881-34711940,34712061-34712162,
34712247-34712353,34712493-34712817
Length = 402
Score = 26.2 bits (55), Expect = 7.5
Identities = 15/40 (37%), Positives = 23/40 (57%), Gaps = 2/40 (5%)
Query: 53 RKVKAVDGFGFPTLEGLVGLYSDGVNERGYFMA--VLEAS 90
+K K +DG + ++GL S GV+ G+ +A VLE S
Sbjct: 222 KKDKVIDGKNIMEGDIIIGLPSSGVHSNGFSLARRVLEKS 261
>03_01_0059 +
484305-484617,484919-485406,485608-486092,486185-486461,
486495-486626,486721-486893,486982-487204
Length = 696
Score = 26.2 bits (55), Expect = 7.5
Identities = 14/46 (30%), Positives = 20/46 (43%)
Query: 26 ERKRNKREVPFTHDEKRIAGCLLQCVYRKVKAVDGFGFPTLEGLVG 71
+R RN R+ + D+K L V R+ + D FP E G
Sbjct: 164 DRARNTRQNSRSRDDKTRGAHSLNSVLRQYRGADDLDFPGSEATSG 209
>10_08_0268 - 16347683-16349089
Length = 468
Score = 25.8 bits (54), Expect = 10.0
Identities = 13/33 (39%), Positives = 16/33 (48%)
Query: 71 GLYSDGVNERGYFMAVLEASRECLMKNHDKFSR 103
G + G N G M V E+SR CL D +R
Sbjct: 319 GAAASGCNAPGAVMRVFESSRFCLEPRGDTMTR 351
>05_04_0308 -
20081366-20082404,20082702-20083078,20084293-20084679,
20085038-20086000
Length = 921
Score = 25.8 bits (54), Expect = 10.0
Identities = 10/19 (52%), Positives = 13/19 (68%)
Query: 105 TPMGNTTAMQSDLNNNCLT 123
TP G TT +Q++ NN C T
Sbjct: 12 TPKGLTTLLQTNPNNRCTT 30
>02_02_0536 +
11304298-11304400,11304731-11305797,11306026-11306416,
11307164-11308041
Length = 812
Score = 25.8 bits (54), Expect = 10.0
Identities = 10/19 (52%), Positives = 13/19 (68%)
Query: 105 TPMGNTTAMQSDLNNNCLT 123
TP G TT +Q++ NN C T
Sbjct: 82 TPKGLTTLLQTNPNNRCTT 100
>01_01_1116 +
8839946-8840048,8840142-8842064,8842192-8842307,
8843340-8843763,8845187-8845452
Length = 943
Score = 25.8 bits (54), Expect = 10.0
Identities = 10/19 (52%), Positives = 13/19 (68%)
Query: 105 TPMGNTTAMQSDLNNNCLT 123
TP G TT +Q++ NN C T
Sbjct: 161 TPKGLTTLLQTNPNNRCTT 179
Database: rice
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.322 0.137 0.405
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,515,423
Number of Sequences: 37544
Number of extensions: 130332
Number of successful extensions: 268
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 259
Number of HSP's gapped (non-prelim): 13
length of query: 124
length of database: 14,793,348
effective HSP length: 74
effective length of query: 50
effective length of database: 12,015,092
effective search space: 600754600
effective search space used: 600754600
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 54 (25.8 bits)
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