GeneModel BLAST Result against nematostella

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000225-TA|BGIBMGA000225-PA|undefined
         (124 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_25090| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   0.84 
SB_32809| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   4.5  

>SB_25090| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1170

 Score = 29.5 bits (63), Expect = 0.84
 Identities = 28/102 (27%), Positives = 42/102 (41%), Gaps = 4/102 (3%)

Query: 19  EEHTMPAERKRNKREVPFTHDEKRIAGCLLQCVYRKVKAVDGFGFPTLEGLVGLYSDGVN 78
           ++HT P+ RKR KR+     + KR    L + V R     DGF    LE +         
Sbjct: 252 QQHTAPSPRKRLKRQTHVAVN-KRPEPKLTESVPRNRTEEDGFRMSALEEM--WERKLAQ 308

Query: 79  ERGYFMAVLEASRECLMKNHDKFSRTTPMGNTTAMQSDLNNN 120
           +R  F  ++E  RE L     + +     G T  + +   NN
Sbjct: 309 DREQFEKLMEFQRESLQVQQQQ-TNAIISGLTNILNTLAKNN 349


>SB_32809| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 312

 Score = 27.1 bits (57), Expect = 4.5
 Identities = 13/22 (59%), Positives = 15/22 (68%)

Query: 51  VYRKVKAVDGFGFPTLEGLVGL 72
           V R+VK V GFGF   +GL GL
Sbjct: 134 VTRRVKPVHGFGFVFRQGLGGL 155


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.322    0.137    0.405 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,196,331
Number of Sequences: 59808
Number of extensions: 150852
Number of successful extensions: 292
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 291
Number of HSP's gapped (non-prelim): 2
length of query: 124
length of database: 16,821,457
effective HSP length: 74
effective length of query: 50
effective length of database: 12,395,665
effective search space: 619783250
effective search space used: 619783250
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 55 (26.2 bits)