GeneModel BLAST Result against fruitfly

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000225-TA|BGIBMGA000225-PA|undefined
         (124 letters)

Database: fruitfly 
           52,641 sequences; 24,830,863 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BT010312-1|AAQ23630.1| 1482|Drosophila melanogaster AT29286p pro...    27   7.2  
AE014297-4119|ABI31211.1| 4685|Drosophila melanogaster CG3339-PB...    27   7.2  
AE014297-4118|AAF56699.2| 4543|Drosophila melanogaster CG3339-PA...    27   7.2  
AE013599-2415|AAF57906.3| 1868|Drosophila melanogaster CG30460-P...    27   7.2  

>BT010312-1|AAQ23630.1| 1482|Drosophila melanogaster AT29286p
           protein.
          Length = 1482

 Score = 27.1 bits (57), Expect = 7.2
 Identities = 21/72 (29%), Positives = 33/72 (45%), Gaps = 6/72 (8%)

Query: 9   SLTEALDVIKEEHTMPAERKRNKREVPFTHDEKRIAGCLLQCVYRKVKAVDGFGFPTLEG 68
           S T A+D +++ H +  E+   KR++  +  ++R    L   V  K      FG P  E 
Sbjct: 260 SRTFAVDTLRK-HVVICEKASKKRKIFDSSRQRRDGTALSTYVLPK-----NFGLPNAER 313

Query: 69  LVGLYSDGVNER 80
             GL S  +N R
Sbjct: 314 TAGLPSPPINSR 325


>AE014297-4119|ABI31211.1| 4685|Drosophila melanogaster CG3339-PB,
            isoform B protein.
          Length = 4685

 Score = 27.1 bits (57), Expect = 7.2
 Identities = 13/36 (36%), Positives = 18/36 (50%)

Query: 79   ERGYFMAVLEASRECLMKNHDKFSRTTPMGNTTAMQ 114
            ERG   A+ E    CLM+    F R TP+ +   +Q
Sbjct: 2456 ERGILNALFEKYFPCLMQRQRDFRRITPITDMAMIQ 2491


>AE014297-4118|AAF56699.2| 4543|Drosophila melanogaster CG3339-PA,
            isoform A protein.
          Length = 4543

 Score = 27.1 bits (57), Expect = 7.2
 Identities = 13/36 (36%), Positives = 18/36 (50%)

Query: 79   ERGYFMAVLEASRECLMKNHDKFSRTTPMGNTTAMQ 114
            ERG   A+ E    CLM+    F R TP+ +   +Q
Sbjct: 2314 ERGILNALFEKYFPCLMQRQRDFRRITPITDMAMIQ 2349


>AE013599-2415|AAF57906.3| 1868|Drosophila melanogaster CG30460-PC,
           isoform C protein.
          Length = 1868

 Score = 27.1 bits (57), Expect = 7.2
 Identities = 21/72 (29%), Positives = 33/72 (45%), Gaps = 6/72 (8%)

Query: 9   SLTEALDVIKEEHTMPAERKRNKREVPFTHDEKRIAGCLLQCVYRKVKAVDGFGFPTLEG 68
           S T A+D +++ H +  E+   KR++  +  ++R    L   V  K      FG P  E 
Sbjct: 258 SRTFAVDTLRK-HVVICEKASKKRKIFDSSRQRRDGTALSTYVLPK-----NFGLPNAER 311

Query: 69  LVGLYSDGVNER 80
             GL S  +N R
Sbjct: 312 TAGLPSPPINSR 323


  Database: fruitfly
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 24,830,863
  Number of sequences in database:  52,641
  
Lambda     K      H
   0.322    0.137    0.405 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,062,116
Number of Sequences: 52641
Number of extensions: 223286
Number of successful extensions: 384
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 382
Number of HSP's gapped (non-prelim): 4
length of query: 124
length of database: 24,830,863
effective HSP length: 76
effective length of query: 48
effective length of database: 20,830,147
effective search space: 999847056
effective search space used: 999847056
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 56 (26.6 bits)