GeneModel BLAST Result against celegans

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000225-TA|BGIBMGA000225-PA|undefined
         (124 letters)

Database: celegans 
           27,539 sequences; 12,573,161 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U20862-5|AAK29861.1|  483|Caenorhabditis elegans Hypothetical pr...    27   2.9  
U64847-11|AAB04878.2|  151|Caenorhabditis elegans Hypothetical p...    26   6.8  
U28929-1|AAN63410.1|  418|Caenorhabditis elegans Hypothetical pr...    26   8.9  

>U20862-5|AAK29861.1|  483|Caenorhabditis elegans Hypothetical
           protein W06E11.1 protein.
          Length = 483

 Score = 27.5 bits (58), Expect = 2.9
 Identities = 22/66 (33%), Positives = 33/66 (50%), Gaps = 9/66 (13%)

Query: 26  ERKRNKREVPFTHDEKRIAGCLLQCVYRKVKAVDGFGFPTLEGLVGLYSDGVNERGYFMA 85
           ER++ +RE    H EK+IA  +   +  KV   D  G P  E +     DG+++ G  + 
Sbjct: 210 ERQKKRREASALHREKKIASDM--WIPMKVHLKD--GDPVAEKI-----DGISQNGLLLD 260

Query: 86  VLEASR 91
             EASR
Sbjct: 261 DPEASR 266


>U64847-11|AAB04878.2|  151|Caenorhabditis elegans Hypothetical
           protein F08F3.1 protein.
          Length = 151

 Score = 26.2 bits (55), Expect = 6.8
 Identities = 7/26 (26%), Positives = 16/26 (61%)

Query: 24  PAERKRNKREVPFTHDEKRIAGCLLQ 49
           P E+K+  R++   HD ++ + C ++
Sbjct: 88  PIEKKKRVRQIQICHDVRKFSSCFIR 113


>U28929-1|AAN63410.1|  418|Caenorhabditis elegans Hypothetical
           protein F09C12.2 protein.
          Length = 418

 Score = 25.8 bits (54), Expect = 8.9
 Identities = 18/52 (34%), Positives = 26/52 (50%), Gaps = 1/52 (1%)

Query: 61  FGFPTLEGLVGLYSDGVNERGYFMAVLEASRECLMKNHD-KFSRTTPMGNTT 111
           F +  L+GL  L+S G+  R    A L  + +C +K  D   SR+ P   TT
Sbjct: 149 FFYQILKGLKYLHSAGIIHRDLKPANLLLNEDCSLKIADFGMSRSGPSTKTT 200


  Database: celegans
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 12,573,161
  Number of sequences in database:  27,539
  
Lambda     K      H
   0.322    0.137    0.405 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,129,054
Number of Sequences: 27539
Number of extensions: 117560
Number of successful extensions: 261
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 260
Number of HSP's gapped (non-prelim): 3
length of query: 124
length of database: 12,573,161
effective HSP length: 73
effective length of query: 51
effective length of database: 10,562,814
effective search space: 538703514
effective search space used: 538703514
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 54 (25.8 bits)