Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000224-TA|BGIBMGA000224-PA|IPR005828|General substrate
transporter, IPR007114|Major facilitator superfamily
(322 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_16011| Best HMM Match : Sugar_tr (HMM E-Value=0) 96 3e-20
SB_2499| Best HMM Match : Sugar_tr (HMM E-Value=1e-28) 62 6e-10
SB_8709| Best HMM Match : Sugar_tr (HMM E-Value=0) 47 2e-05
SB_47688| Best HMM Match : ATP_synt_H (HMM E-Value=7) 44 2e-04
SB_7879| Best HMM Match : Sugar_tr (HMM E-Value=0.03) 39 0.006
SB_17113| Best HMM Match : Sugar_tr (HMM E-Value=0.015) 37 0.019
SB_57462| Best HMM Match : No HMM Matches (HMM E-Value=.) 34 0.14
SB_1462| Best HMM Match : MFS_1 (HMM E-Value=0.042) 34 0.14
SB_43380| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.31
SB_19714| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.72
SB_28247| Best HMM Match : Na_Ca_ex (HMM E-Value=2e-27) 30 2.2
SB_1828| Best HMM Match : DUF938 (HMM E-Value=1.5) 30 2.9
SB_51145| Best HMM Match : RCSD (HMM E-Value=1.3) 29 3.9
SB_18740| Best HMM Match : MFS_1 (HMM E-Value=1.1e-15) 29 3.9
SB_31847| Best HMM Match : Sugar_tr (HMM E-Value=4.6e-05) 29 5.1
SB_41412| Best HMM Match : RRM_1 (HMM E-Value=2.9e-35) 29 6.7
SB_15719| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.9
>SB_16011| Best HMM Match : Sugar_tr (HMM E-Value=0)
Length = 512
Score = 96.3 bits (229), Expect = 3e-20
Identities = 79/329 (24%), Positives = 146/329 (44%), Gaps = 43/329 (13%)
Query: 1 MRGVVAAMPNLFVAVGITIQAALGSVFKWRILCYICGTYSVVMLIANFFLPETPYFVLMK 60
+RG++ ++ L V +G+ + ++G V KWR L + ++++ FF+PETP + L
Sbjct: 171 LRGMLGSVNQLAVTMGLLLAYSMGVVLKWRWLACSGAIFPALLVVLMFFVPETPRWSLSH 230
Query: 61 DTEDKAKKSLTRFRGRDYDIDAEMVQI------------IEFKSANNIENYFVAM----- 103
A ++ FRG + D++ E +I EF ++ F+++
Sbjct: 231 KRRRDALDAMMWFRGPEADVEEECYRIEATMDNTQSMSCAEFCRPAIMKPLFISIALMFF 290
Query: 104 -QFAGVTILMMWTIEVLKASKTSLDPRYGNIILGFTRLSTACLTTVLLFKVGRKALALVS 162
QF G+ ++ + + + D + ++I+G + + +++ K GRK L +
Sbjct: 291 QQFCGINAILFNSASIFHQAGFQ-DSKAVSVIIGAVQFVGTGIACLVVDKAGRKLLLWTT 349
Query: 163 AIGVGIISVFLGLY---------------------IHYATRPTILPQLCFMAYMVF---A 198
A+G+ + + LG Y IH++ + L + +VF
Sbjct: 350 ALGMTVSLIALGFYFELYIPTTQEQPTPTPALLESIHHSIPAGKISWLAITSIVVFNLVF 409
Query: 199 TFGYYTIPFVVMCELFPLQVRXXXXXXXXXXFNILMFLATFCFPYLRDSLGFAFTVLMFG 258
+ +P++VM E+FPLQ R L F T F + D++ T +G
Sbjct: 410 ALAWGPVPWLVMSEIFPLQARGIASSISTLCNWSLAFAVTKTFVNIEDAITIQGTYWFYG 469
Query: 259 IISLLSAVFLYYFLPETKGLTLREIEEYF 287
+S L +F+ F+PETKG TL +IE F
Sbjct: 470 GLSFLGFLFVLMFVPETKGKTLEQIERLF 498
>SB_2499| Best HMM Match : Sugar_tr (HMM E-Value=1e-28)
Length = 456
Score = 62.1 bits (144), Expect = 6e-10
Identities = 31/87 (35%), Positives = 50/87 (57%), Gaps = 2/87 (2%)
Query: 2 RGVVAAMPNLFVAVGITIQAALGSVFKWRILCYICGTYSVVMLIANF-FLPETPYFVLMK 60
RG + ++ L + GI I A+G F WR + G++ +L+ F+PET +++ K
Sbjct: 168 RGAMGSINQLGITAGILISYAIGYAFDWRWSA-VAGSFPAALLVVLMAFMPETARWLIAK 226
Query: 61 DTEDKAKKSLTRFRGRDYDIDAEMVQI 87
E +A+K+L RG DYDID E+ +I
Sbjct: 227 KKETRARKTLLWLRGPDYDIDKELCEI 253
Score = 34.7 bits (76), Expect = 0.10
Identities = 21/104 (20%), Positives = 49/104 (47%), Gaps = 7/104 (6%)
Query: 79 DIDAEMVQIIEFKSANNIENYFVAM------QFAGVTILMMWTIEVLKASKTSLDPRYGN 132
D + + EFK+ + + + ++M QF+G+ M + + + + DP
Sbjct: 322 DTQNQRFSLKEFKNPSLLRPFLISMSLHFFQQFSGINAFMFYCATIFQKAGFK-DPTGVP 380
Query: 133 IILGFTRLSTACLTTVLLFKVGRKALALVSAIGVGIISVFLGLY 176
I++G + + ++ L+ + GR+ L +V+ +G+ I +Y
Sbjct: 381 ILIGAVQFVASAISLALIDRGGRRFLLIVAGVGMSISCFTCAVY 424
>SB_8709| Best HMM Match : Sugar_tr (HMM E-Value=0)
Length = 493
Score = 46.8 bits (106), Expect = 2e-05
Identities = 26/90 (28%), Positives = 46/90 (51%), Gaps = 7/90 (7%)
Query: 1 MRGVVAAMPNLFVAVGITIQAALGSVFK------WRILCYICGTYSVVMLIANFFLPETP 54
MRG + + NLF+ G I + + +F WR + + S++M LPE+P
Sbjct: 173 MRGKLVTLNNLFITGGQFIASVVDGIFAYDRQNGWRFMLGLAAVPSIIMFFGCVILPESP 232
Query: 55 YFVLMKDTEDKAKKSLTRFRGRDYDIDAEM 84
+++ K +A+ +L + RGR D+D E+
Sbjct: 233 RWLISKCKYAEARAALCKIRGRT-DVDREL 261
>SB_47688| Best HMM Match : ATP_synt_H (HMM E-Value=7)
Length = 124
Score = 43.6 bits (98), Expect = 2e-04
Identities = 22/86 (25%), Positives = 43/86 (50%)
Query: 207 FVVMCELFPLQVRXXXXXXXXXXFNILMFLATFCFPYLRDSLGFAFTVLMFGIISLLSAV 266
++++ E+FP ++ +F F L S+G + T +G+I +++ V
Sbjct: 3 WLLLSEIFPSGIKGRAFSLATVLNWGTNVFVSFTFLDLLGSIGTSGTFFFYGLICVIAIV 62
Query: 267 FLYYFLPETKGLTLREIEEYFKSGRS 292
F+Y ++PETK TL +I S ++
Sbjct: 63 FIYKYVPETKNKTLEQISAELNSKKA 88
>SB_7879| Best HMM Match : Sugar_tr (HMM E-Value=0.03)
Length = 201
Score = 38.7 bits (86), Expect = 0.006
Identities = 14/43 (32%), Positives = 28/43 (65%)
Query: 250 FAFTVLMFGIISLLSAVFLYYFLPETKGLTLREIEEYFKSGRS 292
+ +T ++F + + F ++F+PETKG T+ +I ++F+ G S
Sbjct: 141 YPYTFIVFMALVAIFWTFTFFFVPETKGRTIEDITDHFRGGDS 183
>SB_17113| Best HMM Match : Sugar_tr (HMM E-Value=0.015)
Length = 292
Score = 37.1 bits (82), Expect = 0.019
Identities = 25/97 (25%), Positives = 51/97 (52%), Gaps = 4/97 (4%)
Query: 2 RGVVAAMPNLFVAVGIT-IQAALGSVFKWRILCYICGTYSVVMLIANFFLPETPYFVLMK 60
R + N+FV+VG + + + + +WR + +LI +F+PE+P +++ +
Sbjct: 84 RTAAGFISNMFVSVGFSSVTLFVYFIHEWRYQLVAVSATGLPLLIFWWFIPESPRWLIAE 143
Query: 61 DTEDKAKKSLTRFRGRD-YDIDAE--MVQIIEFKSAN 94
+ D+A LT+F ++ +D++ M I E K A+
Sbjct: 144 NKLDEAHALLTKFAEKNRVTVDSKHLMHMIREVKKAD 180
>SB_57462| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 127
Score = 34.3 bits (75), Expect = 0.14
Identities = 25/92 (27%), Positives = 43/92 (46%), Gaps = 11/92 (11%)
Query: 195 MVFATFGYYTIP------FVVMCELFPLQVRXXXXXXXXXXFNILMFLATFCFPYLRDSL 248
M FA G +TI ++ EL+P +R ++ + PY+ DS
Sbjct: 11 MTFALIGKFTISAAYYQIYIHSAELYPTVIRTIGVGFA----SLCARVGAMGAPYVADST 66
Query: 249 GFAFTVLMFGIISLLSAVFLYYFLPETKGLTL 280
++FG +S+ +A + +FLPET+G+ L
Sbjct: 67 PLIAPAIIFGGLSM-TAGMVTFFLPETRGMPL 97
>SB_1462| Best HMM Match : MFS_1 (HMM E-Value=0.042)
Length = 277
Score = 34.3 bits (75), Expect = 0.14
Identities = 24/86 (27%), Positives = 45/86 (52%), Gaps = 5/86 (5%)
Query: 203 YTIPFVVMCELFPLQVRXXXXXXXXXXFNILMFLATFCFPYLRDSLGFAF--TVLMFGII 260
+T +++ EL+P +R I +A + F L+D G + V++FG +
Sbjct: 28 WTTIYLITSELYPTTIRNTAIGTCATFARIGGLVAPY-FIMLKDLPGVSLYLPVIIFGCL 86
Query: 261 SLLSAVFLYYFLPETKGLTL-REIEE 285
+L+A+ ++F+PET + L + IEE
Sbjct: 87 CILAAI-AFFFIPETLKVPLAQSIEE 111
>SB_43380| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 509
Score = 33.1 bits (72), Expect = 0.31
Identities = 43/174 (24%), Positives = 73/174 (41%), Gaps = 17/174 (9%)
Query: 132 NIILGFTRLSTACLTTVLLFKVGRKALALVSAIGVGIISVFLGLYIHYATRPTILPQLCF 191
N+ L + TACL K GRK L L+ A G I+ + L+ Y P + P +
Sbjct: 89 NLALQLPAVLTACLLGTWSDKNGRKPLMLIVAFG-AIVDASVALFTVYTDGP-LYPLI-- 144
Query: 192 MAYMVFATFGYYTIPFVVM----CELFPLQVRXXXXXXXXXXFNILMFLATFCFPYLRDS 247
+ + G+Y + + + P + R + L F
Sbjct: 145 IGGGINGVMGFYPTMVLALLAYIADTTPPERRAIKLAVLEALAFLSGTLGHFSSGIYIHH 204
Query: 248 LGFAFTVLMFGIIS--LLSAVFLYYFLPETKGLTLREIEEYFKSGRSVRQSQTK 299
LG+ T +GI+S L++ ++L +FLPE+ + + IE+ SG+ + Q K
Sbjct: 205 LGYKAT--FWGILSLHLINFIYLLFFLPES--MPKQRIEQ---SGKCLTLEQVK 251
>SB_19714| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 66
Score = 31.9 bits (69), Expect = 0.72
Identities = 13/49 (26%), Positives = 28/49 (57%)
Query: 252 FTVLMFGIISLLSAVFLYYFLPETKGLTLREIEEYFKSGRSVRQSQTKL 300
+T ++F ++ L +F Y+ +PETKG ++ +I F+ + ++L
Sbjct: 6 YTFIVFLVLVLGFWLFTYFLVPETKGRSIDDITRQFRGDSHITLDYSRL 54
>SB_28247| Best HMM Match : Na_Ca_ex (HMM E-Value=2e-27)
Length = 236
Score = 30.3 bits (65), Expect = 2.2
Identities = 17/89 (19%), Positives = 43/89 (48%), Gaps = 1/89 (1%)
Query: 98 NYFVAMQFAGVT-ILMMWTIEVLKASKTSLDPRYGNIILGFTRLSTACLTTVLLFKVGRK 156
++ + + + GVT +++W + V+ + D G ++ F CL+++ + + G
Sbjct: 70 SFIICIVWIGVTSYVLVWMVTVIGYTFLIPDSVMGLSLVAFGSSVPDCLSSLFVARKGDG 129
Query: 157 ALALVSAIGVGIISVFLGLYIHYATRPTI 185
+A+ +G + + L L I + + T+
Sbjct: 130 DMAVSHTVGSNVFDILLCLGIPWLIKTTV 158
>SB_1828| Best HMM Match : DUF938 (HMM E-Value=1.5)
Length = 206
Score = 29.9 bits (64), Expect = 2.9
Identities = 25/78 (32%), Positives = 35/78 (44%), Gaps = 7/78 (8%)
Query: 207 FVVMCELFPLQVRXXXXXXXXXXFNILMFLATFCFPYLRDSLGFAFTVLMFGIISL--LS 264
+V ELFP +R L +F PY+ + L +L FGI+++ L
Sbjct: 62 YVYAAELFPTVIRNIGMGTSTAAAR----LGSFSAPYVVN-LNRIHPLLPFGIMAVKALL 116
Query: 265 AVFLYYFLPETKGLTLRE 282
A L LPETKG+ E
Sbjct: 117 AGILCMTLPETKGMATAE 134
>SB_51145| Best HMM Match : RCSD (HMM E-Value=1.3)
Length = 248
Score = 29.5 bits (63), Expect = 3.9
Identities = 24/77 (31%), Positives = 31/77 (40%), Gaps = 3/77 (3%)
Query: 207 FVVMCELFPLQVRXXXXXXXXXXFNILMFLATFCFPYLRDSLGFAFTVLMFGIISLLSAV 266
+V ELFP VR + LA F R + F LM G+ L A
Sbjct: 25 YVFSAELFPTMVRNSGMGLLSVISRVGAALAPFVVQLTRINAILPFA-LMGGLTFL--AA 81
Query: 267 FLYYFLPETKGLTLREI 283
+FLPET+G E+
Sbjct: 82 LACWFLPETRGKPTLEV 98
>SB_18740| Best HMM Match : MFS_1 (HMM E-Value=1.1e-15)
Length = 839
Score = 29.5 bits (63), Expect = 3.9
Identities = 17/77 (22%), Positives = 40/77 (51%), Gaps = 1/77 (1%)
Query: 2 RGVVAAMPNLFVAVGITIQAALGSVFK-WRILCYICGTYSVVMLIANFFLPETPYFVLMK 60
R V + N+FV++G + + L + + ++ L + +++ +PETP +++ +
Sbjct: 203 RTAVGFLTNIFVSLGFDMLSLLAYLIRDYQYLLLAVSLPAAPLVLFWGVIPETPRWLIAQ 262
Query: 61 DTEDKAKKSLTRFRGRD 77
+ D+A K L F ++
Sbjct: 263 NRLDEAHKLLMDFASKN 279
>SB_31847| Best HMM Match : Sugar_tr (HMM E-Value=4.6e-05)
Length = 549
Score = 29.1 bits (62), Expect = 5.1
Identities = 23/98 (23%), Positives = 47/98 (47%), Gaps = 3/98 (3%)
Query: 2 RGVVAAMPNLFVAVGITIQAALGS-VFKWRILCYICGTYSVVMLIANFFLPETPYFVLMK 60
R ++ ++ +F V + + + V +WR L V + ++PE+P +++ +
Sbjct: 146 RTMIGSVVEIFWPVCLLLHTLIAFLVHEWRNLLLAVSIPGFVFVCFWRYIPESPRWLVTR 205
Query: 61 DTEDKAKKSLTRFRGRDYDIDAEMVQ-IIEFKSANNIE 97
D+A+ L RF G ID + ++ +IE + IE
Sbjct: 206 GRLDEAQAVLNRF-GSSNPIDQQALRGLIESIRESQIE 242
>SB_41412| Best HMM Match : RRM_1 (HMM E-Value=2.9e-35)
Length = 1118
Score = 28.7 bits (61), Expect = 6.7
Identities = 17/64 (26%), Positives = 32/64 (50%), Gaps = 1/64 (1%)
Query: 11 LFVAVGITIQAALGSVFK-WRILCYICGTYSVVMLIANFFLPETPYFVLMKDTEDKAKKS 69
+F VG T+ + + WR I G S++ L+ LPETP +++ ++A+
Sbjct: 781 VFWTVGNTMIVVIAYFIRDWRWYMRISGLPSILFLVFWRLLPETPRWLIAHGRLEEARDV 840
Query: 70 LTRF 73
L ++
Sbjct: 841 LIKY 844
>SB_15719| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 364
Score = 28.3 bits (60), Expect = 8.9
Identities = 14/42 (33%), Positives = 22/42 (52%)
Query: 9 PNLFVAVGITIQAALGSVFKWRILCYICGTYSVVMLIANFFL 50
PN + VGI I A S+ I+C + Y + L+ +FF+
Sbjct: 55 PNTAILVGIIIVIAFFSLIGNSIVCIVFCLYDQLRLVKHFFV 96
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.331 0.143 0.424
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,644,931
Number of Sequences: 59808
Number of extensions: 307889
Number of successful extensions: 879
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 861
Number of HSP's gapped (non-prelim): 24
length of query: 322
length of database: 16,821,457
effective HSP length: 82
effective length of query: 240
effective length of database: 11,917,201
effective search space: 2860128240
effective search space used: 2860128240
T: 11
A: 40
X1: 15 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.9 bits)
S2: 60 (28.3 bits)
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