Silkworm BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000222-TA|BGIBMGA000222-PA|IPR006603|Cystinosin/ERS1p
repeat, IPR005282|Lysosomal cystine transporter
         (566 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.           27   0.41 
DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.          23   8.9  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    23   8.9  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    23   8.9  

>DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.
          Length = 552

 Score = 27.1 bits (57), Expect = 0.41
 Identities = 12/41 (29%), Positives = 22/41 (53%), Gaps = 1/41 (2%)

Query: 455 VSFFGDATKFGLGLFSLVFDIFFILQHYVFYRN-ADKKYNL 494
           +++  D  ++GL ++    D  F +QH+ FY +    KY L
Sbjct: 324 IAYVSDVFRYGLLIYDFFKDSSFRIQHHFFYPDPLASKYEL 364


>DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.
          Length = 495

 Score = 22.6 bits (46), Expect = 8.9
 Identities = 10/24 (41%), Positives = 15/24 (62%)

Query: 535 ILIPGTTVSEHEDDSENDPETRSE 558
           I+I G  + + EDDS N+   +SE
Sbjct: 54  IVIGGFEIEKSEDDSFNNQADKSE 77


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 22.6 bits (46), Expect = 8.9
 Identities = 10/31 (32%), Positives = 17/31 (54%)

Query: 177  VISNIQHPDIVQLVPPSIEIPGSNEPNKTVV 207
            V++N+Q   + QL   +  + GSN+   T V
Sbjct: 1558 VVTNLQPSSVYQLKVETHNVAGSNQAEFTFV 1588


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 22.6 bits (46), Expect = 8.9
 Identities = 10/31 (32%), Positives = 17/31 (54%)

Query: 177  VISNIQHPDIVQLVPPSIEIPGSNEPNKTVV 207
            V++N+Q   + QL   +  + GSN+   T V
Sbjct: 1554 VVTNLQPSSVYQLKVETHNVAGSNQAEFTFV 1584


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.325    0.139    0.432 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 164,752
Number of Sequences: 429
Number of extensions: 6933
Number of successful extensions: 13
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 9
Number of HSP's gapped (non-prelim): 4
length of query: 566
length of database: 140,377
effective HSP length: 61
effective length of query: 505
effective length of database: 114,208
effective search space: 57675040
effective search space used: 57675040
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.6 bits)
S2: 46 (22.6 bits)