GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000222-TA|BGIBMGA000222-PA|IPR006603|Cystinosin/ERS1p
repeat, IPR005282|Lysosomal cystine transporter
         (566 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC17C9.10 |stm1||G-protein coupled receptor Stm1|Schizosacchar...    38   0.005
SPAC2E12.03c |||G-protein coupled receptor |Schizosaccharomyces ...    31   0.32 
SPAC4C5.03 |||CTNS domain protein |Schizosaccharomyces pombe|chr...    31   0.43 
SPBC354.09c |||Tre1 family protein |Schizosaccharomyces pombe|ch...    30   0.75 
SPBC26H8.04c |||DEP domain|Schizosaccharomyces pombe|chr 2|||Manual    30   0.99 
SPBC29A10.10c |||tRNA-splicing endonuclease positive effector |S...    29   1.7  
SPAC20G8.06 |||CCR4-Not complex subunit Not1 |Schizosaccharomyce...    27   5.3  
SPAC13G7.05 |||acyl-coA-sterol acyltransferase |Schizosaccharomy...    27   9.2  

>SPAC17C9.10 |stm1||G-protein coupled receptor
           Stm1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 271

 Score = 37.5 bits (83), Expect = 0.005
 Identities = 24/95 (25%), Positives = 43/95 (45%), Gaps = 2/95 (2%)

Query: 393 WLYYCSYVKLAITLIKYVPQAYMNYKRKSTVGWSIGNIFLDFVGGFLSILQMVLNAYNYN 452
           W +    +   +     +PQ   N+K KST G SI    L  VG       +++  +  +
Sbjct: 177 WPFTAGCISSVLYFCARIPQIIKNHKAKSTEGLSIIFFVLASVGNTSYAFSILV--FPAS 234

Query: 453 DWVSFFGDATKFGLGLFSLVFDIFFILQHYVFYRN 487
           D++++      + LG FS +F   +I   ++ YRN
Sbjct: 235 DYLNYTYANLPWILGAFSTIFLDIYIFYQFIKYRN 269



 Score = 30.3 bits (65), Expect = 0.75
 Identities = 20/75 (26%), Positives = 36/75 (48%), Gaps = 1/75 (1%)

Query: 249 NEINIISYIMGWIYFAAWSVSFYPQIYINFKRKSVVGLNFDFLALNIMGFTMYSLFNCGL 308
           +++N   +  G I    +  +  PQI  N K KS  GL+  F  L  +G T Y+ F+  +
Sbjct: 172 DDLNAWPFTAGCISSVLYFCARIPQIIKNHKAKSTEGLSIIFFVLASVGNTSYA-FSILV 230

Query: 309 YFSKEIQNEYFSRHP 323
           + + +  N  ++  P
Sbjct: 231 FPASDYLNYTYANLP 245



 Score = 27.5 bits (58), Expect = 5.3
 Identities = 13/50 (26%), Positives = 26/50 (52%)

Query: 248 SNEINIISYIMGWIYFAAWSVSFYPQIYINFKRKSVVGLNFDFLALNIMG 297
           +N +  +S  +G +    W V   PQ+  N+K +S   ++  FL + ++G
Sbjct: 11  ANILTELSSFLGALSLGCWVVLLIPQLLENYKNQSGESISDLFLIIWLIG 60


>SPAC2E12.03c |||G-protein coupled receptor |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 283

 Score = 31.5 bits (68), Expect = 0.32
 Identities = 49/219 (22%), Positives = 94/219 (42%), Gaps = 28/219 (12%)

Query: 266 WSVSFYPQIYINFKRKSVVGLNFDFLALNIMGFTMYSLFNCGLYFSKEIQNEYFSRHPRG 325
           W V   PQI  N++ KS  GL+  F+   ++     S++N       ++Q    +     
Sbjct: 30  WCVQLIPQIIKNYRAKSTEGLDTLFILSWVVASIPLSVYN-------QVQELNIALK--- 79

Query: 326 LNPVQLNDVFFSLHAAFATLITITQCFLYERE---EQRVSTVGRGIL--GAFSAVVIVTG 380
           + P    ++F +L  AF T     QC  Y  +    + +  V   +L  G   A++I+T 
Sbjct: 80  VQP----ELFQAL--AFTTFF---QCLYYGSKWPLRKALFVVISFMLFSGGLQAMLILTI 130

Query: 381 SIAVVGKIEWLDWLYYCSYVKLAITLIKYVPQAYMNYKRKSTVGWSIGNIFLDFVGGFLS 440
            + +   +EW   + +   +   +  I ++PQ    ++ ++  G S   + +D  G   S
Sbjct: 131 KLGIRRHVEWP--VVFMGVLATVLVNIGFLPQYISIFRARAVTGISYLFLAIDSSGSLFS 188

Query: 441 ILQMVLNAYNYNDWVSFFGDATKFGLGLFSLVFDIFFIL 479
            L +  + ++    V  +G      +G+F L F IF +L
Sbjct: 189 FLSLPFDRWDVLAAVD-YGLLFIIEMGVFVLAF-IFNVL 225



 Score = 27.9 bits (59), Expect = 4.0
 Identities = 15/48 (31%), Positives = 27/48 (56%), Gaps = 2/48 (4%)

Query: 258 MGWIYFAAWSVSFYPQIYINFKRKSVVGLNFDFLALNIMG--FTMYSL 303
           MG +     ++ F PQ    F+ ++V G+++ FLA++  G  F+  SL
Sbjct: 145 MGVLATVLVNIGFLPQYISIFRARAVTGISYLFLAIDSSGSLFSFLSL 192


>SPAC4C5.03 |||CTNS domain protein |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 302

 Score = 31.1 bits (67), Expect = 0.43
 Identities = 26/108 (24%), Positives = 45/108 (41%), Gaps = 2/108 (1%)

Query: 367 GILGAFSAVVIVTGSIAVVGKIEWLDWLYYCSYVKLAITLIKYVPQAYMNYKRKSTVGWS 426
           G+LG F+  + +    A V    +  W  +  +      +++YVPQ     + +S    S
Sbjct: 159 GLLGVFTWGLFIICLSATVLSSNFA-WAAFLGFSASFCAVVQYVPQIIKTIRHQSHGALS 217

Query: 427 IGNIFLDFVGGFL-SILQMVLNAYNYNDWVSFFGDATKFGLGLFSLVF 473
           I  + +   GGFL   L   L   N+  ++ +   A   GL L   +F
Sbjct: 218 IPMMMMQTPGGFLIGYLLSRLPGTNWTTYMMYIVSACLQGLLLMLCMF 265


>SPBC354.09c |||Tre1 family protein |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 794

 Score = 30.3 bits (65), Expect = 0.75
 Identities = 15/48 (31%), Positives = 24/48 (50%)

Query: 193 SIEIPGSNEPNKTVVISYDICAYGKSPGHSEVTFNVTPPGFVNLDTVY 240
           S+ I G +  + +++ SY +  Y      +  TF  +P GFVN   VY
Sbjct: 197 SLSIDGDDSFHPSLIESYQVGGYDGVSIPTPATFGGSPSGFVNAPLVY 244


>SPBC26H8.04c |||DEP domain|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1496

 Score = 29.9 bits (64), Expect = 0.99
 Identities = 23/75 (30%), Positives = 34/75 (45%), Gaps = 5/75 (6%)

Query: 307 GLYFSKEIQNEYFSRHPRGLNPVQLNDVFFS---LHAAFATLITITQCFLYEREEQRVST 363
           G  FS+E+Q +Y  R   G   V  NDV  S    H +  T + + +    E     +ST
Sbjct: 546 GSVFSEEVQEDYDERQFTGEAAVSANDVLSSSSPRHFSSHTPVNVDKSSYLEMNGHSLST 605

Query: 364 V--GRGILGAFSAVV 376
           V  G+  + +F A V
Sbjct: 606 VISGKESISSFGAKV 620


>SPBC29A10.10c |||tRNA-splicing endonuclease positive effector
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1944

 Score = 29.1 bits (62), Expect = 1.7
 Identities = 12/36 (33%), Positives = 22/36 (61%)

Query: 469 FSLVFDIFFILQHYVFYRNADKKYNLDVKSLIHSFK 504
           + L  D++ + Q Y  Y + ++K  L++KS+  SFK
Sbjct: 460 YRLNLDLYILKQFYCHYLDRNRKPPLNIKSVSESFK 495


>SPAC20G8.06 |||CCR4-Not complex subunit Not1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 2100

 Score = 27.5 bits (58), Expect = 5.3
 Identities = 22/82 (26%), Positives = 32/82 (39%), Gaps = 5/82 (6%)

Query: 132 LILGIPSAHSQLDKMYVEVTDLNLLVEETRLLKLVQIGQYNTSLEVISNIQHPDIVQLVP 191
           LILGIPS       +Y  + ++    E T + K         S   ++N   P   +   
Sbjct: 792 LILGIPSLQLVRPDIYDSIREMIASNENTEVEK-----DKLDSFSALANPASPKAPEYTF 846

Query: 192 PSIEIPGSNEPNKTVVISYDIC 213
            SI +P  N PN    I   +C
Sbjct: 847 VSIHVPPLNVPNAEGEIEESVC 868


>SPAC13G7.05 |||acyl-coA-sterol acyltransferase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 537

 Score = 26.6 bits (56), Expect = 9.2
 Identities = 10/31 (32%), Positives = 20/31 (64%), Gaps = 2/31 (6%)

Query: 256 YIMGWIYFAAWSVSFYPQIYINFKRKSVVGL 286
           Y++ W+  AAW +  Y + Y  ++R +++GL
Sbjct: 102 YVLFWLSMAAWVLQLYARSY--WQRDTLLGL 130


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.325    0.139    0.432 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,553,652
Number of Sequences: 5004
Number of extensions: 105659
Number of successful extensions: 368
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 355
Number of HSP's gapped (non-prelim): 16
length of query: 566
length of database: 2,362,478
effective HSP length: 76
effective length of query: 490
effective length of database: 1,982,174
effective search space: 971265260
effective search space used: 971265260
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.6 bits)
S2: 56 (26.6 bits)