Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000222-TA|BGIBMGA000222-PA|IPR006603|Cystinosin/ERS1p
repeat, IPR005282|Lysosomal cystine transporter
(566 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_01_1021 - 10419383-10419529,10419684-10419733,10419821-104199... 203 3e-52
01_01_1149 - 9134390-9134600,9134732-9134790,9135650-9135724,913... 37 0.037
07_03_0368 + 17351199-17351351,17352166-17352243,17353774-173539... 31 2.5
12_02_1171 - 26669487-26669854,26670769-26670868,26670970-266711... 30 5.7
04_04_1603 - 34716753-34717097,34717512-34717659,34717747-347179... 30 5.7
04_03_0744 + 19237901-19237912,19238119-19238611,19238860-192389... 30 5.7
03_02_0462 + 8669049-8669136,8669922-8670046,8670227-8670437,867... 29 7.5
08_02_0831 + 21619891-21620724 29 9.9
>12_01_1021 -
10419383-10419529,10419684-10419733,10419821-10419938,
10420498-10420540,10420674-10420825,10420876-10420965,
10422881-10423013,10424397-10424515
Length = 283
Score = 203 bits (495), Expect = 3e-52
Identities = 105/245 (42%), Positives = 148/245 (60%), Gaps = 11/245 (4%)
Query: 251 INIISYIMGWIYFAAWSVSFYPQIYINFKRKSVVGLNFDFLALNIMGFTMYSLFNCGLYF 310
+ ++ ++GW+ F AWS SFYPQ+++NFKRKSVVGLNFDFL LN+ + Y ++N L+F
Sbjct: 9 MEVLYQVLGWVAFFAWSFSFYPQVFLNFKRKSVVGLNFDFLVLNLTKHSSYLIYNAALFF 68
Query: 311 SKEIQNEYFSRH-PRGLNPVQLNDVFFSLHAAFATLITITQCFLYE---------REEQR 360
S IQ +Y + + + PV NDV FS+HA T T+ Q F+YE R Q+
Sbjct: 69 SPFIQRQYHETYGDKEMIPVAANDVAFSVHAVALTAFTLFQVFIYEYLILQYNIQRGNQK 128
Query: 361 VSTVGRGILGAFSAVVIVTGSIAVVGKIEWLDWLYYCSYVKLAITLIKYVPQAYMNYKRK 420
+S V I IV I K WL + + +++ +T IKY+PQA MN++RK
Sbjct: 129 ISKVCISITAIVWTAAIVC-LIVAWPKSNWLWLIDVFNSIQVGMTAIKYIPQAIMNFRRK 187
Query: 421 STVGWSIGNIFLDFVGGFLSILQMVLNAYNYNDWVSFFGDATKFGLGLFSLVFDIFFILQ 480
ST+GWSIGNI LD GG L+ QM + + + + V+F+G+ K L L + FDI FI+Q
Sbjct: 188 STIGWSIGNILLDLTGGVLNFGQMGVQSIDQHTLVNFYGNIGKTLLSLEVVFFDILFIIQ 247
Query: 481 HYVFY 485
HYV Y
Sbjct: 248 HYVLY 252
>01_01_1149 -
9134390-9134600,9134732-9134790,9135650-9135724,
9135815-9135934,9136012-9136183,9136277-9136335,
9136516-9136572,9136900-9136998,9137088-9137114,
9137607-9137649,9137779-9138023
Length = 388
Score = 37.1 bits (82), Expect = 0.037
Identities = 19/51 (37%), Positives = 28/51 (54%), Gaps = 1/51 (1%)
Query: 258 MGWIYFAAWSVSFYPQIYINFKRKSVVGLNFDFLALNIMGFTMYSLFNCGL 308
+G + +W V+ PQI N+K KS GL+ FL I+G ++L C L
Sbjct: 43 LGLLSVISWGVAEVPQIITNYKHKSTEGLSLAFLMTWIVG-DFFNLIGCFL 92
Score = 31.1 bits (67), Expect = 2.5
Identities = 14/33 (42%), Positives = 19/33 (57%)
Query: 410 VPQAYMNYKRKSTVGWSIGNIFLDFVGGFLSIL 442
VPQ NYK KST G S+ + VG F +++
Sbjct: 56 VPQIITNYKHKSTEGLSLAFLMTWIVGDFFNLI 88
>07_03_0368 +
17351199-17351351,17352166-17352243,17353774-17353927,
17353997-17354019,17354242-17354319,17354407-17354466,
17354745-17354805,17355080-17355243
Length = 256
Score = 31.1 bits (67), Expect = 2.5
Identities = 22/64 (34%), Positives = 35/64 (54%), Gaps = 4/64 (6%)
Query: 251 INIISYIMGWIYFAAWSVSFYPQIYINFKRKSVVGLNFDFLALNIMGFTMYSLFNC---G 307
+ ++S I+G+ AA ++ PQI K SV GL+ L ++G+T+ +L C G
Sbjct: 55 LRLMSKILGYHVVAASAIGKLPQILKILKHGSVRGLSVASFELEVVGYTI-ALAYCIHKG 113
Query: 308 LYFS 311
L FS
Sbjct: 114 LPFS 117
>12_02_1171 -
26669487-26669854,26670769-26670868,26670970-26671161,
26672475-26672537,26673197-26673347,26673614-26673711,
26673936-26674136
Length = 390
Score = 29.9 bits (64), Expect = 5.7
Identities = 16/40 (40%), Positives = 20/40 (50%), Gaps = 2/40 (5%)
Query: 85 HTVFPFSHLCWTKGKQITMAECSAVLRPRA--AACSISSH 122
HT FP H+ TKGK T A S ++R + C S H
Sbjct: 63 HTHFPAVHIAGTKGKGSTAAFLSNIMREQGYNVGCYTSPH 102
>04_04_1603 -
34716753-34717097,34717512-34717659,34717747-34717984,
34718075-34718285,34718398-34718513,34718698-34718793,
34719279-34719306
Length = 393
Score = 29.9 bits (64), Expect = 5.7
Identities = 9/28 (32%), Positives = 22/28 (78%)
Query: 168 IGQYNTSLEVISNIQHPDIVQLVPPSIE 195
+ ++ T ++VI+N++HP++V+L+ +E
Sbjct: 102 VREFLTEIDVITNVKHPNLVELIGCCVE 129
>04_03_0744 +
19237901-19237912,19238119-19238611,19238860-19238928,
19239124-19239140,19239260-19239357,19240019-19240156,
19240710-19240899,19241175-19241307,19241505-19242442
Length = 695
Score = 29.9 bits (64), Expect = 5.7
Identities = 20/72 (27%), Positives = 35/72 (48%), Gaps = 2/72 (2%)
Query: 252 NIISYIMGWIYFAAWSVSFYPQIYINFKRKSVVGLNFDFLALN-IMGFTMYSLFNCGLYF 310
++IS+ W + A + +YP N + + G F+A++ I+G +Y+L L
Sbjct: 304 SVISWGFLWPFIAKQAGDWYPDNLSNTDFRGLYGYKV-FIAISVILGDGLYNLVKVFLII 362
Query: 311 SKEIQNEYFSRH 322
+KEI N H
Sbjct: 363 AKEICNARSKEH 374
>03_02_0462 +
8669049-8669136,8669922-8670046,8670227-8670437,
8670515-8670752,8671004-8671154,8671353-8671718
Length = 392
Score = 29.5 bits (63), Expect = 7.5
Identities = 10/26 (38%), Positives = 20/26 (76%)
Query: 170 QYNTSLEVISNIQHPDIVQLVPPSIE 195
++ T + VISN++HP++V+L+ +E
Sbjct: 95 EFLTEINVISNVRHPNLVKLIGCCVE 120
>08_02_0831 + 21619891-21620724
Length = 277
Score = 29.1 bits (62), Expect = 9.9
Identities = 12/46 (26%), Positives = 22/46 (47%)
Query: 369 LGAFSAVVIVTGSIAVVGKIEWLDWLYYCSYVKLAITLIKYVPQAY 414
LGA V + G + ++ WL W+Y + L + L+ + A+
Sbjct: 51 LGAVLMAVSLAGLVGACCRVTWLLWVYLLAMFALIVALLGFTAFAF 96
Database: rice
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.325 0.139 0.432
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,776,839
Number of Sequences: 37544
Number of extensions: 627352
Number of successful extensions: 1789
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 1776
Number of HSP's gapped (non-prelim): 11
length of query: 566
length of database: 14,793,348
effective HSP length: 86
effective length of query: 480
effective length of database: 11,564,564
effective search space: 5550990720
effective search space used: 5550990720
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.6 bits)
S2: 62 (29.1 bits)
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