GeneModel BLAST Result against nematostella

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000222-TA|BGIBMGA000222-PA|IPR006603|Cystinosin/ERS1p
repeat, IPR005282|Lysosomal cystine transporter
         (566 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_5256| Best HMM Match : EGF_2 (HMM E-Value=5.1)                      33   0.61 
SB_43682| Best HMM Match : CcoS (HMM E-Value=4.1)                      32   1.1  
SB_53143| Best HMM Match : PKD (HMM E-Value=2.7e-18)                   30   5.7  
SB_46099| Best HMM Match : 7tm_1 (HMM E-Value=4.7e-23)                 30   5.7  
SB_26974| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   7.6  
SB_30491| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   10.0 
SB_24442| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   10.0 

>SB_5256| Best HMM Match : EGF_2 (HMM E-Value=5.1)
          Length = 122

 Score = 33.1 bits (72), Expect = 0.61
 Identities = 19/92 (20%), Positives = 39/92 (42%), Gaps = 2/92 (2%)

Query: 387 KIEWLD-WLYYCSYVKLAITLIKYVPQAYMNYKRKSTVGWSIGNIFLDFVGGFLSILQMV 445
           ++ +LD + YY       + +  Y    Y  Y         + N +LD    +L +    
Sbjct: 2   RLNYLDVYNYYLDVYNYYLDIYNYYLDVYNYYLDVYNYYLDVYNYYLDVYNYYLDVYNYY 61

Query: 446 LNAYNYN-DWVSFFGDATKFGLGLFSLVFDIF 476
           L+ YNY  D  +++ D   + L +++   D++
Sbjct: 62  LDVYNYYLDVYNYYLDVYNYYLDVYNYYLDVY 93


>SB_43682| Best HMM Match : CcoS (HMM E-Value=4.1)
          Length = 187

 Score = 32.3 bits (70), Expect = 1.1
 Identities = 20/61 (32%), Positives = 33/61 (54%), Gaps = 5/61 (8%)

Query: 442 LQMVLNAYNYNDWVSFFGDATKFGLGLFSLVFDIFFILQHYVFYRN-ADKKYNLDVKSLI 500
           L+ V +A N  DW    G+  K+ +GL +L+  + F+L  YV  RN   ++Y   + S+ 
Sbjct: 11  LKDVTDAVNKGDW----GNLGKYIIGLLALISVVLFVLAIYVCVRNRRQRQYAAMLDSVS 66

Query: 501 H 501
           H
Sbjct: 67  H 67


>SB_53143| Best HMM Match : PKD (HMM E-Value=2.7e-18)
          Length = 2111

 Score = 29.9 bits (64), Expect = 5.7
 Identities = 17/54 (31%), Positives = 26/54 (48%), Gaps = 1/54 (1%)

Query: 197  PGSNEPNKTVVISYDICAYGKSPGHSEVTFNVTPPGFVNLDTVYLRITVMHSNE 250
            PG+ E N T V  Y  CA G+S GH +V  +       +   +   +TV+ S +
Sbjct: 1184 PGTLETNTTYVFRY-YCAKGQSRGHFDVRLHAVETDRPHCAIIVPTLTVLGSRD 1236


>SB_46099| Best HMM Match : 7tm_1 (HMM E-Value=4.7e-23)
          Length = 343

 Score = 29.9 bits (64), Expect = 5.7
 Identities = 23/115 (20%), Positives = 46/115 (40%), Gaps = 3/115 (2%)

Query: 234 VNLDTVYLRITVMHSNEINIISYIMGWIYFAAWSVSFYPQIYINFKRKSVVGLNFDFLAL 293
           VN   +Y  ITV+    +      + W+  +AWS     Q++I+    S+  +    +  
Sbjct: 134 VNRARIYRTITVIWLTSLFFAIVQLSWVNTSAWSPQTATQLHISLIYHSIGAVTCFVVPF 193

Query: 294 NIMGFTMYSLFNCGLYFSKEIQNEYFSRHPRGLNPVQLNDVFFSLHAAFATLITI 348
            IM F    +F        +I+ ++ +       P+          + FAT+++I
Sbjct: 194 VIMVFIYGQMFTVIHKQVTDIRKQHVATESNSFRPIYTE---LRAISVFATMLSI 245


>SB_26974| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 212

 Score = 29.5 bits (63), Expect = 7.6
 Identities = 13/49 (26%), Positives = 26/49 (53%)

Query: 374 AVVIVTGSIAVVGKIEWLDWLYYCSYVKLAITLIKYVPQAYMNYKRKST 422
           AVV++   + V   ++ +  +     V +A+ +I YVP  Y+ Y R+ +
Sbjct: 137 AVVVIAVVVDVAVVVDVVAVVVIAVVVDVAVVVIMYVPSEYLKYSRRDS 185


>SB_30491| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1516

 Score = 29.1 bits (62), Expect = 10.0
 Identities = 13/31 (41%), Positives = 16/31 (51%)

Query: 40   KKPCKSSWPPHRTWSRLVAAVGLKRAPRYRG 70
            K  C  SWPP ++ +R   A   K A RY G
Sbjct: 1336 KVRCTLSWPPGQSAARATVATETKCAARYHG 1366


>SB_24442| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 673

 Score = 29.1 bits (62), Expect = 10.0
 Identities = 16/68 (23%), Positives = 27/68 (39%), Gaps = 1/68 (1%)

Query: 385 VGKIEWLD-WLYYCSYVKLAITLIKYVPQAYMNYKRKSTVGWSIGNIFLDFVGGFLSILQ 443
           V ++ +LD + YY       + +  Y    Y  Y         + N +LD    +L +  
Sbjct: 537 VARLNYLDVYNYYLDVYNYYLDIYNYYLDVYNYYLDVYNYYLDVYNYYLDVYNYYLDVYN 596

Query: 444 MVLNAYNY 451
             L+ YNY
Sbjct: 597 YYLDVYNY 604


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.325    0.139    0.432 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,090,790
Number of Sequences: 59808
Number of extensions: 708047
Number of successful extensions: 1959
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 1936
Number of HSP's gapped (non-prelim): 15
length of query: 566
length of database: 16,821,457
effective HSP length: 86
effective length of query: 480
effective length of database: 11,677,969
effective search space: 5605425120
effective search space used: 5605425120
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.6 bits)
S2: 62 (29.1 bits)