GeneModel BLAST Result against celegans

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000222-TA|BGIBMGA000222-PA|IPR006603|Cystinosin/ERS1p
repeat, IPR005282|Lysosomal cystine transporter
         (566 letters)

Database: celegans 
           27,539 sequences; 12,573,161 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z48045-4|CAA88102.2|  404|Caenorhabditis elegans Hypothetical pr...   294   9e-80
Z48045-5|CAD56564.1|  374|Caenorhabditis elegans Hypothetical pr...   293   3e-79
AC024781-2|AAK39328.2|  311|Caenorhabditis elegans Hypothetical ...    41   0.003
AC024845-1|AAF60850.2|  347|Caenorhabditis elegans Hypothetical ...    33   0.54 
U41996-4|AAA83473.1|  238|Caenorhabditis elegans Hypothetical pr...    32   1.2  
U41010-1|AAF98589.2|  313|Caenorhabditis elegans Serpentine rece...    31   2.9  
U40412-1|AAA81395.1|  570|Caenorhabditis elegans Temporarily ass...    30   3.8  

>Z48045-4|CAA88102.2|  404|Caenorhabditis elegans Hypothetical
           protein C41C4.7a protein.
          Length = 404

 Score =  294 bits (722), Expect = 9e-80
 Identities = 134/260 (51%), Positives = 182/260 (70%)

Query: 234 VNLDTVYLRITVMHSNEINIISYIMGWIYFAAWSVSFYPQIYINFKRKSVVGLNFDFLAL 293
           ++L+  + RITV+ S+ + I+  I+GW YF AWS+SFYPQ+Y+NFKRKSVVGLNFDFL+L
Sbjct: 108 LDLEDAFARITVIRSHFLAILIQIVGWTYFFAWSISFYPQMYLNFKRKSVVGLNFDFLSL 167

Query: 294 NIMGFTMYSLFNCGLYFSKEIQNEYFSRHPRGLNPVQLNDVFFSLHAAFATLITITQCFL 353
           N++GF  Y++FN  +Y++  ++NEY   +PR   PV LNDV F++HA  A  ITI QC  
Sbjct: 168 NLVGFCAYAIFNLLMYYNSHVKNEYNIVNPRSPPPVLLNDVVFAVHAFLACFITILQCLF 227

Query: 354 YEREEQRVSTVGRGILGAFSAVVIVTGSIAVVGKIEWLDWLYYCSYVKLAITLIKYVPQA 413
           YER+ Q VS+    ++    +    + +  V+ KI+ L ++   SY+K+A+T  KY PQA
Sbjct: 228 YERDNQSVSSKCIALMIVLISFGFCSAAATVLRKIQLLSFVTSLSYIKMAVTCCKYFPQA 287

Query: 414 YMNYKRKSTVGWSIGNIFLDFVGGFLSILQMVLNAYNYNDWVSFFGDATKFGLGLFSLVF 473
           Y NY RKSTVGWSIGNI LDF GG L ILQM+L A N NDW +F+ +  KFGLG  S+ F
Sbjct: 288 YFNYTRKSTVGWSIGNIMLDFTGGTLDILQMILQAVNVNDWSAFYANPVKFGLGFVSIFF 347

Query: 474 DIFFILQHYVFYRNADKKYN 493
           DI F++QHYV Y NA+  +N
Sbjct: 348 DIIFMVQHYVLYPNAEVPHN 367


>Z48045-5|CAD56564.1|  374|Caenorhabditis elegans Hypothetical
           protein C41C4.7b protein.
          Length = 374

 Score =  293 bits (718), Expect = 3e-79
 Identities = 133/257 (51%), Positives = 181/257 (70%)

Query: 234 VNLDTVYLRITVMHSNEINIISYIMGWIYFAAWSVSFYPQIYINFKRKSVVGLNFDFLAL 293
           ++L+  + RITV+ S+ + I+  I+GW YF AWS+SFYPQ+Y+NFKRKSVVGLNFDFL+L
Sbjct: 108 LDLEDAFARITVIRSHFLAILIQIVGWTYFFAWSISFYPQMYLNFKRKSVVGLNFDFLSL 167

Query: 294 NIMGFTMYSLFNCGLYFSKEIQNEYFSRHPRGLNPVQLNDVFFSLHAAFATLITITQCFL 353
           N++GF  Y++FN  +Y++  ++NEY   +PR   PV LNDV F++HA  A  ITI QC  
Sbjct: 168 NLVGFCAYAIFNLLMYYNSHVKNEYNIVNPRSPPPVLLNDVVFAVHAFLACFITILQCLF 227

Query: 354 YEREEQRVSTVGRGILGAFSAVVIVTGSIAVVGKIEWLDWLYYCSYVKLAITLIKYVPQA 413
           YER+ Q VS+    ++    +    + +  V+ KI+ L ++   SY+K+A+T  KY PQA
Sbjct: 228 YERDNQSVSSKCIALMIVLISFGFCSAAATVLRKIQLLSFVTSLSYIKMAVTCCKYFPQA 287

Query: 414 YMNYKRKSTVGWSIGNIFLDFVGGFLSILQMVLNAYNYNDWVSFFGDATKFGLGLFSLVF 473
           Y NY RKSTVGWSIGNI LDF GG L ILQM+L A N NDW +F+ +  KFGLG  S+ F
Sbjct: 288 YFNYTRKSTVGWSIGNIMLDFTGGTLDILQMILQAVNVNDWSAFYANPVKFGLGFVSIFF 347

Query: 474 DIFFILQHYVFYRNADK 490
           DI F++QHYV Y NA++
Sbjct: 348 DIIFMVQHYVLYPNAEE 364


>AC024781-2|AAK39328.2|  311|Caenorhabditis elegans Hypothetical
           protein Y43H11AL.2 protein.
          Length = 311

 Score = 40.7 bits (91), Expect = 0.003
 Identities = 16/50 (32%), Positives = 30/50 (60%)

Query: 250 EINIISYIMGWIYFAAWSVSFYPQIYINFKRKSVVGLNFDFLALNIMGFT 299
           ++ ++ +I+G I  A W +  +PQ++ N+K K   GL+  FL   ++G T
Sbjct: 37  DLKLLGFIIGLISLALWLIPLFPQLWQNYKTKKCEGLSLAFLFFWLVGDT 86



 Score = 34.3 bits (75), Expect = 0.23
 Identities = 17/47 (36%), Positives = 25/47 (53%)

Query: 400 VKLAITLIKYVPQAYMNYKRKSTVGWSIGNIFLDFVGGFLSILQMVL 446
           + LA+ LI   PQ + NYK K   G S+  +F   VG   ++L  +L
Sbjct: 48  ISLALWLIPLFPQLWQNYKTKKCEGLSLAFLFFWLVGDTCNMLGAIL 94


>AC024845-1|AAF60850.2|  347|Caenorhabditis elegans Hypothetical
           protein Y65B4BL.3 protein.
          Length = 347

 Score = 33.1 bits (72), Expect = 0.54
 Identities = 19/90 (21%), Positives = 42/90 (46%), Gaps = 5/90 (5%)

Query: 397 CSYVKLAITLIKYVPQAYMNYKRKSTVGWSIGNIFLDFVGGFLSILQMVLNAYNYNDWVS 456
           C+    A+ L+K+  +  + Y+   T    + ++F + +  FLS    +++ +NY+    
Sbjct: 111 CTMFLYAVYLVKHETELKIRYRAILT----LPSMFFEMIVSFLSYYSTIISIFNYSSTAQ 166

Query: 457 FFGDATKFGLGLFSLVFDIFF-ILQHYVFY 485
              D       +F+ +  IF+ +L   +FY
Sbjct: 167 KNPDFFSSAFIIFAFIISIFYALLVGVIFY 196


>U41996-4|AAA83473.1|  238|Caenorhabditis elegans Hypothetical
           protein F38E1.9 protein.
          Length = 238

 Score = 31.9 bits (69), Expect = 1.2
 Identities = 36/137 (26%), Positives = 58/137 (42%), Gaps = 10/137 (7%)

Query: 337 SLHAAFATLITITQCFLYEREEQRVSTVGRGILGAFSAVVIVTGSIAVVGKIEWLDWLYY 396
           S   A   +I I Q FL+  +    + +  G LG  SAV     +  VV K   +  L  
Sbjct: 97  SFFVAVQLVIIILQIFLFSGQ----TMLSVGFLGIVSAV-----AYGVVSKSIPMQTLTA 147

Query: 397 CSYVKLAITLIKYVPQAYMNYKRKSTVGWSIGNIFLDFVGGFLSILQMVLNAYNYNDWVS 456
                + I ++  + Q   NY+ +ST   S+ ++FL F G    +   V +  +    VS
Sbjct: 148 VQTAGIPIVVVSKLLQISQNYRAQSTGQLSLISVFLQFAGTLARVFTSVQDTGDMLLIVS 207

Query: 457 FFGDATKFGLGLFSLVF 473
           +   A   GL +F+  F
Sbjct: 208 YSTAAVLNGL-IFAQFF 223


>U41010-1|AAF98589.2|  313|Caenorhabditis elegans Serpentine
           receptor, class x protein19 protein.
          Length = 313

 Score = 30.7 bits (66), Expect = 2.9
 Identities = 28/110 (25%), Positives = 44/110 (40%), Gaps = 7/110 (6%)

Query: 262 YFAAWSVSFYPQIYINFKRKSVVGLNFDFLALNIMGFTMYSLFNCGLYFSKEIQNEYFSR 321
           + A + +  Y +I+ NF    +   NF  +    M FT Y    C LYF +E  +  FS 
Sbjct: 103 FCAVYMIFLYDRIFSNFNTYML--RNFAVVVSIGMCFTFYEFLGCYLYFEQE--SWLFSY 158

Query: 322 HPRGLNPVQLN---DVFFSLHAAFATLITITQCFLYEREEQRVSTVGRGI 368
               +   QL    D  F++    ATL          R+  R+ +   G+
Sbjct: 159 PENDVRCDQLTWYCDFIFNMSLVVATLFLNLLAAYKARKLHRIVSDSTGV 208


>U40412-1|AAA81395.1|  570|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 257 protein.
          Length = 570

 Score = 30.3 bits (65), Expect = 3.8
 Identities = 13/44 (29%), Positives = 23/44 (52%)

Query: 172 NTSLEVISNIQHPDIVQLVPPSIEIPGSNEPNKTVVISYDICAY 215
           +  ++++  +QH +I+QL   S E   SN   K   IS + C +
Sbjct: 81  DNEIDMMKKLQHENIIQLFDASAESRSSNRSVKEYKISMEYCKF 124


  Database: celegans
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 12,573,161
  Number of sequences in database:  27,539
  
Lambda     K      H
   0.325    0.139    0.432 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,591,901
Number of Sequences: 27539
Number of extensions: 559666
Number of successful extensions: 1696
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 1683
Number of HSP's gapped (non-prelim): 12
length of query: 566
length of database: 12,573,161
effective HSP length: 85
effective length of query: 481
effective length of database: 10,232,346
effective search space: 4921758426
effective search space used: 4921758426
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.6 bits)
S2: 62 (29.1 bits)