Silkworm BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000221-TA|BGIBMGA000221-PA|IPR006050|DNA photolyase,
N-terminal, IPR005101|DNA photolyase, FAD-binding, IPR006051|DNA
photolyase, FAD- binding N-terminal
         (441 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF117815-1|ABO38438.1|  535|Tribolium castaneum cryptochrome 2 p...   446   e-127
DQ855497-1|ABH88184.1|  127|Tribolium castaneum chemosensory pro...    26   0.46 
AY675073-1|AAV74190.1|  533|Tribolium castaneum chitinase 5 prot...    23   4.3  
DQ855496-1|ABH88183.1|  129|Tribolium castaneum chemosensory pro...    23   5.7  
DQ855498-1|ABH88185.1|  127|Tribolium castaneum chemosensory pro...    22   7.5  
AJ973445-1|CAJ01492.1|  127|Tribolium castaneum hypothetical pro...    22   7.5  
DQ414247-1|ABD63009.2|  414|Tribolium castaneum paired protein.        22   9.9  

>EF117815-1|ABO38438.1|  535|Tribolium castaneum cryptochrome 2
           protein.
          Length = 535

 Score =  446 bits (1098), Expect = e-127
 Identities = 203/441 (46%), Positives = 281/441 (63%), Gaps = 10/441 (2%)

Query: 7   VIHWFRLDLRIHDNLALRNAINEAENRKHLLRPIYFLDPNI--KDKVGINRLRFLLQSLE 64
           ++HWFR  LR+HDN +LR  +  A       R ++ LDP       VGIN+ RFLLQ LE
Sbjct: 19  MVHWFRRGLRLHDNPSLREGLKGART----FRCVFVLDPWFAGSSNVGINKWRFLLQCLE 74

Query: 65  XXXXXXXXXXTCLYVLRGKAVDLLPKLFDDWQVKYLTCQVDIDPEFVQQDEYIEDIAEKK 124
                     + L+V+RG+  D LPKLF +W    LT + D +P    +D  +  + ++ 
Sbjct: 75  DLDRSLRKLNSRLFVIRGQPADALPKLFKEWGTTALTFEEDPEPFGGVRDHNLTTLCQEL 134

Query: 125 GVFINKRVQHTVYDVHKVLRENNGAVPLTYQKFLSLVKSINV----KEPIEISNVLSSHC 180
           G+ + ++V HT+Y +  ++  N G  PLTY +FL+++  +      + P+  +++  +H 
Sbjct: 135 GISVVQKVSHTLYHLQDIIDRNGGRAPLTYHQFLAIIACMGPPPQPEPPVTFNSLNGAHT 194

Query: 181 KPIDIQSENYSIPNLKELQIDEETLAPVKYHGGETEALKRLNLYMSKKEWVCKFEKPNSS 240
              D   E Y +P L+EL  D E   P  + GGE+EAL RL  ++ +K WV  F +P  +
Sbjct: 195 PLTDDHDEKYGVPTLEELGFDTEGRLPPVWQGGESEALARLERHLERKAWVASFGRPKMT 254

Query: 241 PNSIEPSTTVLSPYISHGCLSAKLFYYKLKEVENGRQHTLPPVSLMGQLMWREFYYTAGT 300
           P S+ PS T LSPY+  GCLS +LFYY+L ++    +   PP+SL GQL+WREF+Y A T
Sbjct: 255 PQSLLPSQTGLSPYLRFGCLSTRLFYYQLTDLYKKIKKAFPPLSLHGQLLWREFFYCAAT 314

Query: 301 GVANFDKMVGNAICIQIPWTKNDAFLKAWAEGKTGYPFVDAIMRQLKQEGWIHHLARHMV 360
              NFDKM+GN IC+QIPW KN   L  WA G+TG+P++DAIM QL++EGWIHHLARH V
Sbjct: 315 KNPNFDKMIGNPICVQIPWDKNAEALAKWANGQTGFPWIDAIMTQLREEGWIHHLARHAV 374

Query: 361 ACFLTRGDLWISWEEGAKIFEDYLLDYDWSLNAGNWMWLSASAFFYKYFRVYSPVAFGQK 420
           ACFLTRGDLW+SWEEG K+FE+ LLD DWS+NAG WMWLS S+FF ++F  Y P+ FG+K
Sbjct: 375 ACFLTRGDLWLSWEEGMKVFEELLLDADWSVNAGMWMWLSCSSFFQQFFHCYCPIKFGRK 434

Query: 421 TDKEGVYIKKYVPELKKYPRE 441
            D  G YI+KY+P LK  P +
Sbjct: 435 ADPNGDYIRKYLPVLKNMPSQ 455


>DQ855497-1|ABH88184.1|  127|Tribolium castaneum chemosensory
           protein 11 protein.
          Length = 127

 Score = 26.2 bits (55), Expect = 0.46
 Identities = 11/18 (61%), Positives = 13/18 (72%)

Query: 419 QKTDKEGVYIKKYVPELK 436
           +K DKEG Y KKY  E+K
Sbjct: 106 EKYDKEGEYRKKYEAEIK 123


>AY675073-1|AAV74190.1|  533|Tribolium castaneum chitinase 5
           protein.
          Length = 533

 Score = 23.0 bits (47), Expect = 4.3
 Identities = 11/48 (22%), Positives = 19/48 (39%), Gaps = 4/48 (8%)

Query: 347 KQEGWIHHLARHMVACFLTRGDLWISWEEGAKIFEDYLLDYDWSLNAG 394
           K  GW      H    +  +G+ W+ +E+     E   +  DW  + G
Sbjct: 319 KDSGWTKKWDEHGKVPYAYKGNQWVGYEDP----ESVQIKMDWIKSKG 362


>DQ855496-1|ABH88183.1|  129|Tribolium castaneum chemosensory
           protein 10 protein.
          Length = 129

 Score = 22.6 bits (46), Expect = 5.7
 Identities = 9/18 (50%), Positives = 13/18 (72%)

Query: 420 KTDKEGVYIKKYVPELKK 437
           K DK+GVY +KY   ++K
Sbjct: 107 KYDKDGVYRQKYKDVIEK 124


>DQ855498-1|ABH88185.1|  127|Tribolium castaneum chemosensory
           protein 12 protein.
          Length = 127

 Score = 22.2 bits (45), Expect = 7.5
 Identities = 9/17 (52%), Positives = 10/17 (58%)

Query: 420 KTDKEGVYIKKYVPELK 436
           K D  G+Y  KY  ELK
Sbjct: 105 KYDPTGIYKNKYADELK 121


>AJ973445-1|CAJ01492.1|  127|Tribolium castaneum hypothetical
           protein protein.
          Length = 127

 Score = 22.2 bits (45), Expect = 7.5
 Identities = 9/17 (52%), Positives = 10/17 (58%)

Query: 420 KTDKEGVYIKKYVPELK 436
           K D  G+Y  KY  ELK
Sbjct: 105 KYDPTGIYKNKYADELK 121


>DQ414247-1|ABD63009.2|  414|Tribolium castaneum paired protein.
          Length = 414

 Score = 21.8 bits (44), Expect = 9.9
 Identities = 10/27 (37%), Positives = 13/27 (48%)

Query: 242 NSIEPSTTVLSPYISHGCLSAKLFYYK 268
           N I P        +SHGC+S  L  Y+
Sbjct: 69  NGIRPCVISRQLRVSHGCVSKILNRYQ 95


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.321    0.138    0.431 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 114,975
Number of Sequences: 317
Number of extensions: 5108
Number of successful extensions: 18
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 9
Number of HSP's gapped (non-prelim): 7
length of query: 441
length of database: 114,650
effective HSP length: 59
effective length of query: 382
effective length of database: 95,947
effective search space: 36651754
effective search space used: 36651754
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 44 (21.8 bits)