BLASTP 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= BGIBMGA000221-TA|BGIBMGA000221-PA|IPR006050|DNA photolyase, N-terminal, IPR005101|DNA photolyase, FAD-binding, IPR006051|DNA photolyase, FAD- binding N-terminal (441 letters) Database: bee 429 sequences; 140,377 total letters Searching.....................................................done Score E Sequences producing significant alignments: (bits) Value EF117814-1|ABO38437.1| 570|Apis mellifera cryptochrome 2 protein. 435 e-124 AY601637-1|AAT11850.1| 683|Apis mellifera hexamerin 70b protein. 24 2.2 >EF117814-1|ABO38437.1| 570|Apis mellifera cryptochrome 2 protein. Length = 570 Score = 435 bits (1072), Expect = e-124 Identities = 203/438 (46%), Positives = 283/438 (64%), Gaps = 10/438 (2%) Query: 8 IHWFRLDLRIHDNLALRNAINEAENRKHLLRPIYFLDPNI--KDKVGINRLRFLLQSLEX 65 +HWFR LR+HDN +LR + A R ++ LDP +GIN+ RFLLQ LE Sbjct: 24 VHWFRKGLRLHDNPSLREGLAGAST----FRCVFVLDPWFAGSTNIGINKWRFLLQCLED 79 Query: 66 XXXXXXXXXTCLYVLRGKAVDLLPKLFDDWQVKYLTCQVDIDPEFVQQDEYIEDIAEKKG 125 + L+V+RG+ D LPKLF +W LT + D +P +D I + ++ G Sbjct: 80 LDCSLRKLNSRLFVIRGQPADALPKLFKEWGTTNLTFEEDPEPFGRVRDHNISALCKELG 139 Query: 126 VFINKRVQHTVYDVHKVLRENNGAVPLTYQKFLSLVKSINVKEP----IEISNVLSSHCK 181 + + ++V HT+Y + +++ N PLTY +F ++V S++ EP + + V S++ Sbjct: 140 ISVVQKVSHTLYKLDEIIERNGDKPPLTYHQFQTVVASMDPPEPPVPTVTSACVGSAYTP 199 Query: 182 PIDIQSENYSIPNLKELQIDEETLAPVKYHGGETEALKRLNLYMSKKEWVCKFEKPNSSP 241 + ++Y +P L+EL D E L P + GGE+EAL RL ++ +K WV F +P +P Sbjct: 200 LKEDHDDHYGVPTLEELGFDTEGLLPPVWVGGESEALARLERHLERKAWVASFGRPKMTP 259 Query: 242 NSIEPSTTVLSPYISHGCLSAKLFYYKLKEVENGRQHTLPPVSLMGQLMWREFYYTAGTG 301 S+ PS T LSPY+ GCLS +LFYY+L ++ + +PP+SL GQL+WREF+Y A T Sbjct: 260 QSLLPSQTGLSPYLRFGCLSTRLFYYQLTDLYKKIKKAVPPLSLHGQLLWREFFYCAATK 319 Query: 302 VANFDKMVGNAICIQIPWTKNDAFLKAWAEGKTGYPFVDAIMRQLKQEGWIHHLARHMVA 361 NFD+M GN IC+QIPW KN L WA G+TG+P++DAIM QL++EGWIHHLARH VA Sbjct: 320 NPNFDRMQGNPICVQIPWDKNVEALAKWANGQTGFPWIDAIMTQLREEGWIHHLARHAVA 379 Query: 362 CFLTRGDLWISWEEGAKIFEDYLLDYDWSLNAGNWMWLSASAFFYKYFRVYSPVAFGQKT 421 CFLTRGDLWISWEEG K+F++ LLD DWS+NAG WMWLS S+FF ++F Y PV FG+K Sbjct: 380 CFLTRGDLWISWEEGMKVFDELLLDADWSVNAGMWMWLSCSSFFQQFFHCYCPVRFGRKA 439 Query: 422 DKEGVYIKKYVPELKKYP 439 D G YI++Y+P LK +P Sbjct: 440 DPNGDYIRRYLPVLKNFP 457 >AY601637-1|AAT11850.1| 683|Apis mellifera hexamerin 70b protein. Length = 683 Score = 24.2 bits (50), Expect = 2.2 Identities = 37/187 (19%), Positives = 76/187 (40%), Gaps = 9/187 (4%) Query: 144 RENNGAVPLTYQKFLSLVKSIN--VKEPIEISNVLSSHCKPIDIQSENYSIPNLKELQID 201 RE VPL QK++ ++ ++ + I++ V+ S+ + + ++ + L + Sbjct: 309 RETGATVPLHMQKYVQMIHDLHTRISTAIDLGYVVDSYGNHVKLYTKQ-GLNVLGNIVQG 367 Query: 202 EETLAPVKYHGGETEALKRLNLYMSKKEWVCKFEKPNSSPNSIEPSTTVLSPYISHGCLS 261 V+ + G+ + L R L + V K P++++ +T L + Sbjct: 368 NGDSVNVQLY-GQLDLLVRKVLGFGYESNV----KYQVVPSALQMWSTSLRDPVFFSIYK 422 Query: 262 AKLFYYKLKEVENGRQHTLPPVSLMGQLMWREFYYTAGTGVANFDKMVGNAICIQIPWTK 321 L YY K EN ++T ++ G + T +F+ M+ N + IQ Sbjct: 423 TILDYYH-KYKENLPKYTTEELNFPGVSIESVTVDKLITYFDHFESMLNNGVSIQSHAKA 481 Query: 322 NDAFLKA 328 + +KA Sbjct: 482 KNTMIKA 488 Database: bee Posted date: Oct 5, 2007 11:13 AM Number of letters in database: 140,377 Number of sequences in database: 429 Lambda K H 0.321 0.138 0.431 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 134,679 Number of Sequences: 429 Number of extensions: 5999 Number of successful extensions: 13 Number of sequences better than 10.0: 2 Number of HSP's better than 10.0 without gapping: 2 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 9 Number of HSP's gapped (non-prelim): 2 length of query: 441 length of database: 140,377 effective HSP length: 60 effective length of query: 381 effective length of database: 114,637 effective search space: 43676697 effective search space used: 43676697 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.8 bits) S2: 45 (22.2 bits)
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