Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000221-TA|BGIBMGA000221-PA|IPR006050|DNA photolyase,
N-terminal, IPR005101|DNA photolyase, FAD-binding, IPR006051|DNA
photolyase, FAD- binding N-terminal
(441 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC947.11c |elg1||DNA replication factor C complex subunit Elg1... 31 0.24
SPCP25A2.02c |rhp26||SNF2 family helicase Rhp26|Schizosaccharomy... 30 0.56
SPBC428.20c |alp6|SPBC902.01c|gamma tubulin complex Spc98/GCP3 s... 30 0.74
SPBC19G7.09 |ulp1||SUMO deconjugating enzyme Ulp1|Schizosaccharo... 29 1.3
SPBC106.17c |cys2||O-acetyltransferase |Schizosaccharomyces pomb... 29 1.3
SPAP7G5.02c |gua2||GMP synthase [glutamine-hydrolyzing] |Schizos... 29 1.7
SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces po... 28 2.3
SPAC688.11 |end4|sla2|Huntingtin-interacting protein homolog|Sch... 28 2.3
SPBC29A10.14 |rec8||meiotic cohesin complex subunit Rec8|Schizos... 27 4.0
SPAC458.05 |pik3|vps34|phosphatidylinositol 3-kinase Pik3|Schizo... 27 4.0
SPAC1B3.04c |||mitochondrial GTPase Guf1 |Schizosaccharomyces po... 27 5.2
SPBC25H2.09 |||DUF1690 family protein|Schizosaccharomyces pombe|... 27 5.2
SPAC22G7.07c |||mRNA |Schizosaccharomyces pombe|chr 1|||Manual 27 5.2
SPBC1703.02 |rsc9||RSC complex subunit Rsc9|Schizosaccharomyces ... 27 6.9
SPAC23G3.09 |taf4||transcription factor TFIID complex subunit Ta... 26 9.1
SPBC342.06c |rtt109|kat11|RTT109 family histone lysine acetyltra... 26 9.1
>SPBC947.11c |elg1||DNA replication factor C complex subunit
Elg1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 920
Score = 31.5 bits (68), Expect = 0.24
Identities = 22/68 (32%), Positives = 35/68 (51%), Gaps = 5/68 (7%)
Query: 199 QIDEETLAPVKYHGGETEALKRLNLYMSK-KEWV--CKFEKPNSSPNSIEPSTTVLSPYI 255
QI E+ L KY +T+ + +SK +W+ C+ KP SS S+ PS+++
Sbjct: 318 QILEKGLWVSKYAPSKTQDCCAFSQCLSKIADWLRSCRLTKPESS--SVPPSSSISRSST 375
Query: 256 SHGCLSAK 263
H C S+K
Sbjct: 376 IHSCTSSK 383
>SPCP25A2.02c |rhp26||SNF2 family helicase Rhp26|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 973
Score = 30.3 bits (65), Expect = 0.56
Identities = 12/37 (32%), Positives = 21/37 (56%)
Query: 353 HHLARHMVACFLTRGDLWISWEEGAKIFEDYLLDYDW 389
H A+++V TRG + I+ G +I+ D +L +W
Sbjct: 399 HRYAKNLVESVFTRGHILITTYAGLRIYGDLILPREW 435
>SPBC428.20c |alp6|SPBC902.01c|gamma tubulin complex Spc98/GCP3
subunit Alp6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 821
Score = 29.9 bits (64), Expect = 0.74
Identities = 16/58 (27%), Positives = 30/58 (51%), Gaps = 1/58 (1%)
Query: 134 HTVYDVHKVLRENNGAVPLTYQKFLSLVKSINVKEPIEISNVLSSHCKPIDIQSENYS 191
H ++D+ KV+ + A+ L Y SL I + PI ++ L++ PI + N++
Sbjct: 716 HQLHDILKVILNFHDAIELLYNFSCSLSNRIRINVPIS-TDALAAQYTPIKNELSNFT 772
Score = 29.1 bits (62), Expect = 1.3
Identities = 15/52 (28%), Positives = 26/52 (50%)
Query: 246 PSTTVLSPYISHGCLSAKLFYYKLKEVENGRQHTLPPVSLMGQLMWREFYYT 297
P +++PY S L F ++LK +E H+ V+L + ++R YT
Sbjct: 595 PINVIITPYCSRQYLKIFNFLWRLKRIEFALAHSWRRVNLGERNVFRNLDYT 646
>SPBC19G7.09 |ulp1||SUMO deconjugating enzyme
Ulp1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 568
Score = 29.1 bits (62), Expect = 1.3
Identities = 19/67 (28%), Positives = 32/67 (47%), Gaps = 4/67 (5%)
Query: 187 SENYSIPNLKELQIDEETLAPVKYHGGETEALKRLNLYMSKKEWVCKFEKPNSSPNSIEP 246
S+N S+ N +L + +ET + HG EA +N + NSSPN P
Sbjct: 178 SKNLSVSNRLQLAVFKETTSSTLSHGNSVEA-DEINSFNPTPFSSSPLHFTNSSPN---P 233
Query: 247 STTVLSP 253
++ +++P
Sbjct: 234 NSDIVTP 240
>SPBC106.17c |cys2||O-acetyltransferase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 504
Score = 29.1 bits (62), Expect = 1.3
Identities = 10/24 (41%), Positives = 17/24 (70%)
Query: 235 EKPNSSPNSIEPSTTVLSPYISHG 258
+K + PNS++PS ++ SP +S G
Sbjct: 46 QKQQACPNSVDPSASITSPSLSSG 69
>SPAP7G5.02c |gua2||GMP synthase [glutamine-hydrolyzing]
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 539
Score = 28.7 bits (61), Expect = 1.7
Identities = 17/68 (25%), Positives = 34/68 (50%), Gaps = 2/68 (2%)
Query: 104 VDIDPEFVQQDEYIEDIAEKKGVFINKRVQHTVYDVHKVLRENNGAVPLTYQKFL--SLV 161
VD EF+ + + + D +K+ + N + + ++++E NG V Q L ++
Sbjct: 297 VDASEEFIGKLKGVTDPEKKRKIIGNTFIHVFEREAERIVKETNGKVEYLLQGTLYPDVI 356
Query: 162 KSINVKEP 169
+SI+ K P
Sbjct: 357 ESISFKGP 364
>SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 2812
Score = 28.3 bits (60), Expect = 2.3
Identities = 15/63 (23%), Positives = 29/63 (46%), Gaps = 1/63 (1%)
Query: 92 FDDWQVKYLTCQVDIDPEFVQQDEYIEDIAEKKGVFINKRVQHTVYDVHKVLRENNGAVP 151
F DWQ C I+ + ++ Y+ D +E++ + + +++ H V+R V
Sbjct: 147 FSDWQSLVSYCCQAIEKLSIAEETYVSD-SEEEPISQKNYQEISIWKSHDVIRVKQEVVE 205
Query: 152 LTY 154
L Y
Sbjct: 206 LIY 208
>SPAC688.11 |end4|sla2|Huntingtin-interacting protein
homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1092
Score = 28.3 bits (60), Expect = 2.3
Identities = 23/101 (22%), Positives = 45/101 (44%), Gaps = 2/101 (1%)
Query: 80 LRGKAVDLLPKLFDDWQVKYLTCQVDIDPEFVQQDEYIEDIAEKKGVFINK-RVQHTVYD 138
LR + +DLL K + Q+K + Q ID + + E E + + + R +H +
Sbjct: 491 LRQEHLDLLSK-YKQIQLKASSAQEAIDKKEKMEREMKNKNLELADMILERDRARHELET 549
Query: 139 VHKVLRENNGAVPLTYQKFLSLVKSINVKEPIEISNVLSSH 179
+H+ R+ + + S+ + E+SN+LS +
Sbjct: 550 MHRSQRDKQESTERELRLLQEKAASLERNKSSEVSNLLSRY 590
>SPBC29A10.14 |rec8||meiotic cohesin complex subunit
Rec8|Schizosaccharomyces pombe|chr 2|||Manual
Length = 561
Score = 27.5 bits (58), Expect = 4.0
Identities = 24/96 (25%), Positives = 43/96 (44%), Gaps = 3/96 (3%)
Query: 154 YQKFLSLVKSINVKEPIEISNVLSSHCKPIDIQSENYSIPNLKELQIDEETLAPVKYHGG 213
Y F S V +++++ E+ + S K IDIQ+E N K+L + E+ +
Sbjct: 77 YSFFHSQVSTLHLRVRKELDHFTSKPFKNIDIQNEQ---TNPKQLLLAEDPAFIPEVSLY 133
Query: 214 ETEALKRLNLYMSKKEWVCKFEKPNSSPNSIEPSTT 249
+ L ++L++ + E PN S P +T
Sbjct: 134 DAFNLPSVDLHVDMSSFTQPKENPNISVLETLPDST 169
>SPAC458.05 |pik3|vps34|phosphatidylinositol 3-kinase
Pik3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 801
Score = 27.5 bits (58), Expect = 4.0
Identities = 17/64 (26%), Positives = 32/64 (50%), Gaps = 3/64 (4%)
Query: 214 ETEALKRLNLYMSKKEWVCKFEKPNSSPNSIEPSTTVL---SPYISHGCLSAKLFYYKLK 270
ET + + L LY+ + +++ P SS +PS L + IS + L++Y +
Sbjct: 359 ETASNEELLLYLLQLVQALRYDNPISSDERFQPSPLALFLVNRAISSPSIGNDLYWYLVV 418
Query: 271 EVEN 274
E+E+
Sbjct: 419 EIED 422
>SPAC1B3.04c |||mitochondrial GTPase Guf1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 646
Score = 27.1 bits (57), Expect = 5.2
Identities = 15/53 (28%), Positives = 24/53 (45%), Gaps = 1/53 (1%)
Query: 196 KELQIDEETLA-PVKYHGGETEALKRLNLYMSKKEWVCKFEKPNSSPNSIEPS 247
KEL I T+ +KY G E + NL+ + + + + +P I PS
Sbjct: 413 KELLITSPTVPYRIKYKNGREEVISNPNLFPTNHQGISELLEPTVDATIITPS 465
>SPBC25H2.09 |||DUF1690 family protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 162
Score = 27.1 bits (57), Expect = 5.2
Identities = 21/74 (28%), Positives = 36/74 (48%), Gaps = 2/74 (2%)
Query: 127 FINKRVQHTVYDVHKVLRENNGAVPLTYQKFLSLVKSINVKEPIEISNVLSSHCKPIDIQ 186
+I KRVQ + + LR+ + +++ S K+I + SN+LS+ + +
Sbjct: 43 YIQKRVQDELKQLQ--LRQKKAIDAIQEEEWKSNAKTIKDSQGSLDSNLLSAEFRSFQEK 100
Query: 187 SENYSIPNLKELQI 200
E S N KEL+I
Sbjct: 101 LEKQSSINDKELKI 114
>SPAC22G7.07c |||mRNA |Schizosaccharomyces pombe|chr 1|||Manual
Length = 413
Score = 27.1 bits (57), Expect = 5.2
Identities = 15/46 (32%), Positives = 21/46 (45%), Gaps = 1/46 (2%)
Query: 369 LWISWEEGAKIFEDYLLDYDWSLN-AGNWMWLSASAFFYKYFRVYS 413
+W + +E F +L W+L W WL +AF F VYS
Sbjct: 274 VWCTNKEKYVNFVKKVLFKKWNLTLVSTWTWLKITAFGEPLFDVYS 319
>SPBC1703.02 |rsc9||RSC complex subunit Rsc9|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 780
Score = 26.6 bits (56), Expect = 6.9
Identities = 18/55 (32%), Positives = 27/55 (49%), Gaps = 3/55 (5%)
Query: 13 LDLRIHDNLALRNAINEAENRKHLLRP---IYFLDPNIKDKVGINRLRFLLQSLE 64
+D I L LRN++ EN KH+ + I L+ +I+ N L FL L+
Sbjct: 313 MDRAIGIALVLRNSVLSVENAKHVAQTKLVISVLEASIRCAKTFNNLEFLHYCLD 367
>SPAC23G3.09 |taf4||transcription factor TFIID complex subunit
Taf4|Schizosaccharomyces pombe|chr 1|||Manual
Length = 365
Score = 26.2 bits (55), Expect = 9.1
Identities = 18/74 (24%), Positives = 36/74 (48%), Gaps = 5/74 (6%)
Query: 175 VLSSHCKPIDIQSENYSIPNLKELQIDEETLAPVKYHGGETEALKRLNLYMSKKEWVCKF 234
++ SH + + ++NY K++ +TLA Y E+E +R L + + E +
Sbjct: 171 IVESHHRTSQLHTDNY-----KQVDNVRQTLANFAYKEYESEERRRTVLNIRRAEHEARL 225
Query: 235 EKPNSSPNSIEPST 248
+ NS+ + E S+
Sbjct: 226 AELNSASTNEEGSS 239
>SPBC342.06c |rtt109|kat11|RTT109 family histone lysine
acetyltransferase|Schizosaccharomyces pombe|chr
2|||Manual
Length = 369
Score = 26.2 bits (55), Expect = 9.1
Identities = 12/46 (26%), Positives = 27/46 (58%), Gaps = 1/46 (2%)
Query: 79 VLRGKAVDLLPKLFDDWQVKYLTCQVDIDPEFVQQDEYIEDIAEKK 124
+ GKAV+ LP+ DD + +YL C++ + + +E+ + + ++
Sbjct: 204 ITTGKAVEELPRFPDDPKCRYL-CELQDEKSDMSVEEFWDTLTYRQ 248
Database: spombe
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.321 0.138 0.431
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,241,263
Number of Sequences: 5004
Number of extensions: 100945
Number of successful extensions: 211
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 207
Number of HSP's gapped (non-prelim): 18
length of query: 441
length of database: 2,362,478
effective HSP length: 75
effective length of query: 366
effective length of database: 1,987,178
effective search space: 727307148
effective search space used: 727307148
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 55 (26.2 bits)
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