Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000221-TA|BGIBMGA000221-PA|IPR006050|DNA photolyase,
N-terminal, IPR005101|DNA photolyase, FAD-binding, IPR006051|DNA
photolyase, FAD- binding N-terminal
(441 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_01_0783 + 5835517-5835861,5835989-5836060,5836140-5836220,583... 373 e-103
04_04_0072 + 22524974-22525310,22526334-22526552,22526826-225275... 102 7e-22
02_04_0317 + 21996324-21996681,21996833-21996859,21997299-219982... 100 5e-21
02_05_0008 + 24934917-24935229,24936387-24936608,24936876-249375... 84 2e-16
03_02_0962 + 12766575-12766745,12768001-12768230,12768341-127684... 41 0.002
06_03_1012 - 26893828-26894052,26894137-26894355,26894513-268946... 40 0.005
01_05_0408 + 21888898-21890181,21891289-21891984,21892167-21893705 31 1.4
09_06_0061 + 20596360-20596618,20597039-20597158,20597329-205974... 31 2.4
12_02_0503 - 19756561-19757991,19758606-19759967 30 4.2
05_01_0082 - 546134-546552,546755-547102,547192-547327,547404-54... 29 5.6
03_02_0531 - 9240635-9240957,9241742-9241865,9241961-9242103,924... 29 5.6
03_01_0016 + 131141-131236,131743-132043,132125-132341,132440-13... 29 5.6
10_07_0135 + 13308839-13308899,13310146-13310495,13310574-133107... 29 9.8
06_03_0746 - 24111579-24112348,24113164-24113256,24113355-241134... 29 9.8
>02_01_0783 +
5835517-5835861,5835989-5836060,5836140-5836220,
5836293-5836490,5836576-5836647,5836803-5836889,
5836986-5837084,5837191-5837274,5837351-5837437,
5837578-5837649,5837912-5838025,5838127-5838214,
5838293-5838388,5838507-5838694
Length = 560
Score = 373 bits (918), Expect = e-103
Identities = 193/463 (41%), Positives = 276/463 (59%), Gaps = 40/463 (8%)
Query: 10 WFRLDLRIHDNLALRNAINEAENRKHLLRPIYFLDPNI-----------KDKVGINRLRF 58
WFR LR+HDN AL A + L P++ LDP + G+ R+RF
Sbjct: 18 WFRKGLRVHDNPALDAARRGGAAAR--LYPVFVLDPRYLRPDQAAPSPGSARAGVARVRF 75
Query: 59 LLQSLEXXXXXXXXXXTCLYVLR----GKAVDLLPKLFDDWQVKYLTCQVDIDPEFVQQD 114
LL+SL + L +LR G + DW + L + D +P + +D
Sbjct: 76 LLESLSDLDARLRRLGSRLLLLRARDDGDVAGTVCAALKDWNIGKLCFESDTEPYALARD 135
Query: 115 EYIEDIAEKKGVFINKRVQHTVYDVHKVLRE---------NNGAVPLTYQKFLSLVKSIN 165
+ + D A G+ + V HT++D +++ + N G P+TYQ F+++
Sbjct: 136 KKVMDFAAASGIDVFSPVSHTLFDPAEIIEKFLFSFGKWKNGGRPPMTYQSFVAIAG--- 192
Query: 166 VKEPIEISNVLSSHCKPIDIQSEN--YSIPNLKEL---QIDEETLAPVKYHGGETEALKR 220
EP E S P+ E +P ++EL I +E L+ + GGETEALKR
Sbjct: 193 --EPPEPIMEEYSELPPVGDTGEYELLPVPRVEELGYGDISQEDLS--LFRGGETEALKR 248
Query: 221 LNLYMSKKEWVCKFEKPNSSPNS-IEPSTTVLSPYISHGCLSAKLFYYKLKEV-ENGRQH 278
+ + KEWV KFEKP P++ ++P+TTVLSPY+ GCLS++ FY+ ++++ + ++H
Sbjct: 249 MRESLHDKEWVAKFEKPKGDPSAFLKPATTVLSPYLKFGCLSSRYFYHCIQDIYRSTKKH 308
Query: 279 TLPPVSLMGQLMWREFYYTAGTGVANFDKMVGNAICIQIPWTKNDAFLKAWAEGKTGYPF 338
T PPVSL GQL+WR+F+YT G NFD+M GN IC QIPWT+N+ AW +G+TGYP+
Sbjct: 309 TNPPVSLTGQLLWRDFFYTVAFGTPNFDQMKGNKICKQIPWTENEELFPAWRDGRTGYPW 368
Query: 339 VDAIMRQLKQEGWIHHLARHMVACFLTRGDLWISWEEGAKIFEDYLLDYDWSLNAGNWMW 398
+DAIM QL++ GW+HHLARH VACFLTRGDL+I WE+G +FE L+D DW++N GNWMW
Sbjct: 369 IDAIMIQLRKWGWMHHLARHSVACFLTRGDLFIHWEKGRDVFERLLIDSDWAINNGNWMW 428
Query: 399 LSASAFFYKYFRVYSPVAFGQKTDKEGVYIKKYVPELKKYPRE 441
LS S+FFY+Y R+YSP +FG+K D G YI+ ++P LK P+E
Sbjct: 429 LSCSSFFYQYHRIYSPTSFGKKYDPNGNYIRHFIPVLKDMPKE 471
>04_04_0072 +
22524974-22525310,22526334-22526552,22526826-22527532,
22527664-22528482
Length = 693
Score = 102 bits (244), Expect = 7e-22
Identities = 114/453 (25%), Positives = 194/453 (42%), Gaps = 35/453 (7%)
Query: 6 TVIHWFRLDLRIHDNLALRNAINEAENRKHLLRPIYFLDPNIKDKVGINRLR--FLLQSL 63
TV+ WFR DLR+ DN AL A + P Y P R+ +L QSL
Sbjct: 13 TVV-WFRRDLRVEDNPALAAAARAGGE----VVPAYVWAPEEDGPYYPGRVSRWWLSQSL 67
Query: 64 EXXXXXXXXXXTCLYVLR--GKAVDLLPKLFDDWQVKYLTCQVDIDPEFVQQDEYIEDIA 121
+ V R AV L +L D L DP + +D ++++
Sbjct: 68 KHLDASLRRLGAGKLVTRRSADAVVALLQLVRDTGATRLFFNHLYDPISLVRDHRLKEMM 127
Query: 122 EKKGVFINKRVQHTVYDVHKVLRENNGAVPLT---YQKFLSLV--KSINVKEPIEISNVL 176
+G+ + +Y+ +V+ + + + + + LS+ + + P I++
Sbjct: 128 AAEGIIVQSFNADLLYEPWEVVDDEGQSFTMFAPFWNRCLSMPYDPAAPLLPPKRINSGD 187
Query: 177 SSHCKPIDIQSENYSIPNLKELQIDEETLAPVKYHGGETEALKRLNLYMSKKEWVCKFEK 236
S C D+ E+ S + L + G A K L +++ + +
Sbjct: 188 LSMCPSDDLIFEDDS-------ERGSNALLARAWSPGWQNADKALTAFLNGP--LIHYSV 238
Query: 237 PNSSPNSIEPSTTVLSPYISHGCLSAKLFYY--KLKEV----ENGRQHTLPPVSLMGQLM 290
+S ST++LSPY+ G LS + ++ ++K++ E R + +
Sbjct: 239 NRKKADSA--STSLLSPYLHFGELSVRKVFHLVRMKQLVWSNEGNRAAEESCTLFLRSIG 296
Query: 291 WREFY-YTAGTGVANFDKMVGNAICIQIPWTKNDAFLKAWAEGKTGYPFVDAIMRQLKQE 349
RE+ Y + + +K + + PW N+ + K W +G+TGYP VDA MR+L
Sbjct: 297 LREYSRYLSFNHPCSHEKPLLAHLRF-FPWVINECYFKIWRQGRTGYPLVDAGMRELWAT 355
Query: 350 GWIHHLARHMVACFLTRGDLWISWEEGAKIFEDYLLDYDWSLNAGNWMWLSASAFFYKYF 409
GW+H R +V+ F + L + W G K F D LLD D +A W ++S S +
Sbjct: 356 GWLHDRIRVVVSSFFVK-VLQLPWRWGMKYFWDTLLDADLESDALGWQYISGSLPDGREL 414
Query: 410 -RVYSPVAFGQKTDKEGVYIKKYVPELKKYPRE 441
R+ +P G K D G Y+++++PEL + P E
Sbjct: 415 DRIDNPQLEGYKFDPHGEYVRRWLPELARLPTE 447
>02_04_0317 +
21996324-21996681,21996833-21996859,21997299-21998227,
21998317-21999162
Length = 719
Score = 99.5 bits (237), Expect = 5e-21
Identities = 64/203 (31%), Positives = 104/203 (51%), Gaps = 10/203 (4%)
Query: 247 STTVLSPYISHGCLSAKLFYY--KLKEV--ENGRQHTLPP--VSLMGQLMWREFY-YTAG 299
ST++LSPY+ G LS + ++ ++K++ N H V + + RE+ Y
Sbjct: 264 STSLLSPYLHFGELSVRKVFHQVRMKQLMWSNEGNHAGDESCVLFLRSIGLREYSRYLTF 323
Query: 300 TGVANFDKMVGNAICIQIPWTKNDAFLKAWAEGKTGYPFVDAIMRQLKQEGWIHHLARHM 359
+ +K + + PW ++ + K W +G+TGYP VDA MR+L GW+H R +
Sbjct: 324 NHPCSLEKPLLAHLRF-FPWVVDEVYFKVWRQGRTGYPLVDAGMRELWATGWLHDRIRVV 382
Query: 360 VACFLTRGDLWISWEEGAKIFEDYLLDYDWSLNAGNWMWLSASAFFYKYF-RVYSPVAFG 418
V+ F + L + W G K F D LLD D +A W ++S S + R+ +P G
Sbjct: 383 VSSFFVK-VLQLPWRWGMKYFWDTLLDADLESDALGWQYISGSLPDGRELDRIDNPQLEG 441
Query: 419 QKTDKEGVYIKKYVPELKKYPRE 441
K D G Y+++++PEL + P E
Sbjct: 442 YKFDPHGEYVRRWLPELARLPTE 464
>02_05_0008 +
24934917-24935229,24936387-24936608,24936876-24937591,
24937646-24937728,24938448-24938514,24938833-24939228,
24939276-24939318,24939380-24939474,24940287-24940314,
24940636-24940754
Length = 693
Score = 84.2 bits (199), Expect = 2e-16
Identities = 104/420 (24%), Positives = 178/420 (42%), Gaps = 35/420 (8%)
Query: 1 MSKTPTVIHWFRLDLRIHDNLALRNAINEAENRKHLLRPIYFLDPNIKDKVGINRLR--F 58
M+ + + WFR DLRI DN AL +A R + P++ P + + R +
Sbjct: 1 MAGSERTVVWFRRDLRIDDNPALASAA-----RDGAVLPVFIWCPADEGQFYPGRCSRWW 55
Query: 59 LLQSLEXXXXXXXXXXTCLYVLRGKA-VDLLPKLFDDWQVKYLTCQVDIDPEFVQQDEYI 117
L QSL L ++R ++ ++ L + D L DP + +D+ I
Sbjct: 56 LKQSLPHLSQSLESLGCPLVLIRAESTLEALLRCIDSVGATRLVYNHLYDPVSLVRDDKI 115
Query: 118 EDIAEKKGVFINKRVQHTVYDVHKVLRENNGAVPLTYQKFLSLVKSINVKEPIEISNVLS 177
+ G+ I +Y+ ++ +++G T+ + + PI+ S L+
Sbjct: 116 KKELSALGISIQSFNGDLLYEPWEIY-DDSGLAFTTFNMYWEKCMEL----PIDASPSLA 170
Query: 178 S-HCKPI-DIQS-ENYSIPNL-KELQIDEET---LAPVKYHGGETEALKRLNLYMSKKEW 230
P+ ++S + S+ +L E DEE+ L + G A K L ++S
Sbjct: 171 PWKLVPVPGLESVRSCSVDDLGLESSKDEESSNALLMRAWSPGWRNAEKMLEEFVS--HG 228
Query: 231 VCKFEKPNSSPNSIEPSTTVLSPYISHGCLSAKLFY-----YKLKEVENGRQHTLPPVS- 284
+ ++ K +T++LSPY+ G +S + Y ++K G +
Sbjct: 229 LLEYSKHGMKVEG--ATTSLLSPYLHFGEVSVRKVYQLVRMQQIKWENEGTSEAEESIHF 286
Query: 285 LMGQLMWREF--YYTAGTGVANFDKMVGNAICIQIPWTKNDAFLKAWAEGKTGYPFVDAI 342
M + RE+ Y + ++GN PW ++ K+W +G TGYP VDA
Sbjct: 287 FMRSIGLREYSRYLCFNFPFTHEKSLLGN--LKHYPWKVDEERFKSWRQGMTGYPLVDAG 344
Query: 343 MRQLKQEGWIHHLARHMVACFLTRGDLWISWEEGAKIFEDYLLDYDWSLNAGNWMWLSAS 402
MR+L GW H+ R +++ F + L I W G K F D LLD D + W ++S S
Sbjct: 345 MRELWATGWTHNRIRVIISSFAVK-FLLIPWTWGMKYFWDVLLDADLESDILGWQYISGS 403
Score = 33.9 bits (74), Expect = 0.26
Identities = 12/24 (50%), Positives = 18/24 (75%)
Query: 418 GQKTDKEGVYIKKYVPELKKYPRE 441
GQK D +GVY++ ++PEL + P E
Sbjct: 470 GQKYDPDGVYVRTWIPELARMPTE 493
>03_02_0962 +
12766575-12766745,12768001-12768230,12768341-12768439,
12768687-12768774
Length = 195
Score = 41.1 bits (92), Expect = 0.002
Identities = 38/135 (28%), Positives = 63/135 (46%), Gaps = 18/135 (13%)
Query: 150 VPLTYQKFLSLVKSINVKEPIEISNVLSSHCKPIDIQSENYSIPNLKELQIDEETLAPVK 209
+P Y F VK ++V++ ++ + C P+ E IP L EL + T P
Sbjct: 1 MPSNYGGFREAVKGLDVRKVLDAPEEVK--CVPMKNVLEPGEIPTLAELGL---TAPPAM 55
Query: 210 YHG-----------GETEALKRLNLYMSKKEWVCKFEKPNSSPNSIEPS--TTVLSPYIS 256
HG GE EAL+RL + S+ +S+ +SI + + +SP+++
Sbjct: 56 AHGSKAAVGSTLIGGEAEALERLKKFASECCMQPNKGDKDSTRDSIYGANFSCKISPWLA 115
Query: 257 HGCLSAKLFYYKLKE 271
GCLS + Y +LK+
Sbjct: 116 TGCLSPRFMYEELKK 130
>06_03_1012 -
26893828-26894052,26894137-26894355,26894513-26894652,
26894790-26895198
Length = 330
Score = 39.5 bits (88), Expect = 0.005
Identities = 29/93 (31%), Positives = 40/93 (43%), Gaps = 13/93 (13%)
Query: 8 IHWFRLDLRIHDNLALRNAINEAENRKHLLRPIYFLDPNIK---------DKVGINRLRF 58
I WFR DLR+ DN A+ A + P+Y +DP I K G R +F
Sbjct: 87 IVWFRNDLRVLDN----EAVVRAWAASDAVLPVYCVDPRISAGSTHYFGFPKTGALRAQF 142
Query: 59 LLQSLEXXXXXXXXXXTCLYVLRGKAVDLLPKL 91
L++ LE L + GK D+LP +
Sbjct: 143 LIECLEDLKRNLTKQGLDLLIRHGKPEDILPSI 175
>01_05_0408 + 21888898-21890181,21891289-21891984,21892167-21893705
Length = 1172
Score = 31.5 bits (68), Expect = 1.4
Identities = 18/46 (39%), Positives = 28/46 (60%), Gaps = 3/46 (6%)
Query: 78 YVLRGKAVDLLPKLFDDWQVKYLTCQVDIDPEF-VQQDEYIEDIAE 122
YVL G+A++++ D+ +KYL V +DPE V D+Y+ D E
Sbjct: 800 YVLGGRAMEIVYN--DEKLIKYLATAVQVDPERPVLVDKYLIDAIE 843
>09_06_0061 +
20596360-20596618,20597039-20597158,20597329-20597462,
20597578-20597730,20597816-20597927,20598022-20598352,
20598524-20598737,20598842-20598931,20599669-20599924,
20600029-20600141,20600733-20600831,20600915-20600980,
20601018-20601167,20601278-20601368,20601710-20601749,
20603888-20605247,20605478-20605507,20605834-20605885,
20606264-20606397,20606513-20606665,20607089-20607202
Length = 1356
Score = 30.7 bits (66), Expect = 2.4
Identities = 17/40 (42%), Positives = 24/40 (60%), Gaps = 2/40 (5%)
Query: 10 WFRLDLRIHDNLALRNAINEAENRKHLLRPIYFLDPNIKD 49
WF+ DLR+ D+ L A+ AE R+ +L P+Y D I D
Sbjct: 49 WFKHDLRVDDHPGLAAAV-AAEPRRPVL-PLYVFDRRILD 86
>12_02_0503 - 19756561-19757991,19758606-19759967
Length = 930
Score = 29.9 bits (64), Expect = 4.2
Identities = 21/96 (21%), Positives = 44/96 (45%), Gaps = 5/96 (5%)
Query: 105 DIDPEFVQQDEYIEDI---AEKKGVFINKRVQHTVYDVHKVLRENNGAVPLTYQKFLSLV 161
D+ Q+ ++E I +++ N + V+ + ++E A L +FL L
Sbjct: 33 DLCKRLQQKLPFVEAILYAVDRQQTLSNPSLSEVVWQLRDAIQEAEDA--LDTLEFLDLK 90
Query: 162 KSINVKEPIEISNVLSSHCKPIDIQSENYSIPNLKE 197
S N + + +S++LSS + + + + NLK+
Sbjct: 91 SSANNRSKVSLSSLLSSISRKFHVADSSRATENLKD 126
>05_01_0082 -
546134-546552,546755-547102,547192-547327,547404-547702,
548434-548500
Length = 422
Score = 29.5 bits (63), Expect = 5.6
Identities = 15/36 (41%), Positives = 22/36 (61%), Gaps = 2/36 (5%)
Query: 200 IDEETLAPVKYHGGETEALKRLNL--YMSKKEWVCK 233
IDE+TLAP K G A+K+LN + +EW+ +
Sbjct: 89 IDEKTLAPTKPGTGMVIAVKKLNQEGHQGHREWLAE 124
>03_02_0531 -
9240635-9240957,9241742-9241865,9241961-9242103,
9242205-9242340,9242468-9242796,9243236-9243305
Length = 374
Score = 29.5 bits (63), Expect = 5.6
Identities = 15/36 (41%), Positives = 21/36 (58%), Gaps = 2/36 (5%)
Query: 200 IDEETLAPVKYHGGETEALKRLNL--YMSKKEWVCK 233
IDE TL PVK G A+K+L L + +EW+ +
Sbjct: 100 IDERTLTPVKPGTGMIVAVKKLKLDSFQGHREWLAE 135
>03_01_0016 +
131141-131236,131743-132043,132125-132341,132440-132773,
132883-132996,133065-133193,133293-133469,133555-133746,
134844-134981,135327-135559,135900-136003,136633-136727,
136817-137053,137801-137922,138252-138354,138750-138826,
138909-139017,139107-139253,139953-140000,140292-140492,
140589-140738,140917-141002,141088-141193,141278-141373,
141759-141911,142647-142819,142923-142986,144056-144193,
144548-144595,144690-144836,144907-144968,146540-146645,
147357-147461,147548-147679,147765-147974,148070-148171,
148261-148398
Length = 1729
Score = 29.5 bits (63), Expect = 5.6
Identities = 15/62 (24%), Positives = 32/62 (51%), Gaps = 3/62 (4%)
Query: 83 KAVDLLPKLFDDWQVKYLTCQ-VDIDPEFVQQDEYIEDIAEKKGVFINKRVQHTVYDVHK 141
+ +++LP+ + W + + + I+P+F D Y++ + F+NK V Y+ K
Sbjct: 869 ECIEVLPECYYPWFAQSMVMKRASIEPKF--HDLYLKFFVKVNSRFLNKEVLKATYENCK 926
Query: 142 VL 143
+L
Sbjct: 927 IL 928
>10_07_0135 +
13308839-13308899,13310146-13310495,13310574-13310709,
13310806-13310942,13311041-13311164,13313393-13313871
Length = 428
Score = 28.7 bits (61), Expect = 9.8
Identities = 14/38 (36%), Positives = 22/38 (57%), Gaps = 2/38 (5%)
Query: 200 IDEETLAPVKYHGGETEALKRLNL--YMSKKEWVCKFE 235
IDE+TLAP + G A+K+L + KEW+ + +
Sbjct: 104 IDEQTLAPARPGSGMVVAVKKLKPEGFQGHKEWLTEVD 141
>06_03_0746 -
24111579-24112348,24113164-24113256,24113355-24113460,
24113587-24113783,24113893-24114103,24114198-24114273,
24114347-24114426,24114659-24114754,24114894-24114965,
24115067-24115264,24115273-24115569
Length = 731
Score = 28.7 bits (61), Expect = 9.8
Identities = 12/39 (30%), Positives = 19/39 (48%)
Query: 395 NWMWLSASAFFYKYFRVYSPVAFGQKTDKEGVYIKKYVP 433
N W + ++ + F QK DK G+YI +Y+P
Sbjct: 335 NSFWCCYGTGIESFSKLGDSIYFEQKGDKPGLYIIQYIP 373
Database: rice
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.321 0.138 0.431
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,323,097
Number of Sequences: 37544
Number of extensions: 567706
Number of successful extensions: 1158
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 1135
Number of HSP's gapped (non-prelim): 19
length of query: 441
length of database: 14,793,348
effective HSP length: 84
effective length of query: 357
effective length of database: 11,639,652
effective search space: 4155355764
effective search space used: 4155355764
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 61 (28.7 bits)
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