Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000221-TA|BGIBMGA000221-PA|IPR006050|DNA photolyase,
N-terminal, IPR005101|DNA photolyase, FAD-binding, IPR006051|DNA
photolyase, FAD- binding N-terminal
(441 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_36192| Best HMM Match : No HMM Matches (HMM E-Value=.) 342 3e-94
SB_49633| Best HMM Match : FAD_binding_7 (HMM E-Value=0) 327 1e-89
SB_24027| Best HMM Match : FAD_binding_7 (HMM E-Value=0) 320 2e-87
SB_6930| Best HMM Match : FAD_binding_7 (HMM E-Value=0) 282 5e-76
SB_10209| Best HMM Match : No HMM Matches (HMM E-Value=.) 195 5e-50
SB_24026| Best HMM Match : FAD_binding_7 (HMM E-Value=1.1e-13) 183 2e-46
SB_51314| Best HMM Match : FAD_binding_7 (HMM E-Value=0) 170 2e-42
SB_24028| Best HMM Match : DNA_photolyase (HMM E-Value=1.3e-39) 120 2e-27
SB_21201| Best HMM Match : FAD_binding_7 (HMM E-Value=1.3e-05) 76 7e-14
SB_31640| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 1.1
SB_21709| Best HMM Match : F5_F8_type_C (HMM E-Value=8.7e-21) 31 1.9
SB_58662| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 2.5
>SB_36192| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 563
Score = 342 bits (841), Expect = 3e-94
Identities = 192/472 (40%), Positives = 268/472 (56%), Gaps = 40/472 (8%)
Query: 3 KTPTVIHWFRLDLRIHDNLALRNAINEAENRKHLLRPIYFLDPN--IKDKVGINRLRFLL 60
KT IHW R LRIHDN ALR+A+ R +Y LD +G+N RFLL
Sbjct: 16 KTSHSIHWLRKGLRIHDNPALRDAVLNWGT----FRVVYILDTKSVASSNIGLNLWRFLL 71
Query: 61 QSLEXXXXXXXXXXTCLYVLRGKAVDLLPKLFDDWQVKYLTCQVDIDPEFVQQDEYI--- 117
Q+LE + L+V+RG+ D+ P+LF +W + LT + D +P F +++ +
Sbjct: 72 QALEDLDDSLRKLNSRLFVIRGQPADVFPRLFREWGITRLTFEEDSEP-FGRRETLLFAC 130
Query: 118 -EDIAEKKG------VFINKRVQHTVYDVHKVL--------------RENNGAVPLTYQK 156
E K +FI + ++ ++ KVL N G PLTY+K
Sbjct: 131 WRGKPELKSPLIDLTLFITCKDLESMTELLKVLVILYYPLPPGAQIIDRNGGTPPLTYKK 190
Query: 157 FLSLVKSINVKEP----IEISNVLSSHCKPIDIQSENYSIPNLKELQIDEETLAPVKYHG 212
FLS+++ I +P I+ S H D E Y +P ++EL ++ L +HG
Sbjct: 191 FLSVIEGIAPPDPPVPHIDPSAQELGHTPLSDNHDELYGVPTMEELGLETSKLFVEVWHG 250
Query: 213 GETEALKRLNLYMSKKEWVCKFEKPNSSPNSIEPSTTVLSPYISHGCLSAKLFYYKLKEV 272
GETEALKRL+ ++ +K W+ F KP + +S+ S + +SPY+ GCLS +LFYY+L ++
Sbjct: 251 GETEALKRLDRHLERKAWIASFGKPKVTSDSLMASPSGVSPYLRFGCLSPRLFYYRLMDL 310
Query: 273 ENGRQHTLPPVSLMGQLMWREFYYTAGTGVANFDKMVGNAICIQIPWTKND---AFLKAW 329
+ PP SL GQL+WREF++ T NFDKM N IC+ I W + + L+ W
Sbjct: 311 YRKVKGGPPPTSLYGQLLWREFFFVVSTNNPNFDKMESNPICLYIKWRTDKQVASDLQKW 370
Query: 330 AE--GKTGYPFVDAIMRQLKQEGWIHHLARHMVACFLTRGDLWISWEEGAKIFEDYLLDY 387
+ +TG+P++DAIM QLKQEGWIH+LAR VA FLTRG LWISWE G K+F ++LLD
Sbjct: 371 TDVGAQTGFPWIDAIMSQLKQEGWIHYLARVAVASFLTRGCLWISWEAGMKVFAEHLLDA 430
Query: 388 DWSLNAGNWMWLSASAFFYKYFRVYSPVAFGQKTDKEGVYIKKYVPELKKYP 439
DWS NAGNWMW S SAF ++F PV F + D G YI+KY+P LK +P
Sbjct: 431 DWSSNAGNWMWWSYSAFSQQFFNPPCPVEFSKSLDASGDYIRKYLPVLKGFP 482
>SB_49633| Best HMM Match : FAD_binding_7 (HMM E-Value=0)
Length = 1291
Score = 327 bits (803), Expect = 1e-89
Identities = 166/442 (37%), Positives = 251/442 (56%), Gaps = 13/442 (2%)
Query: 6 TVIHWFRLDLRIHDNLALRNAINEAENRKHLLRPIYFLDPNIK--DKVGINRLRFLLQSL 63
T +HWFR DLR+HDN +L +++ PIY LD K+ NR FL + L
Sbjct: 225 TSVHWFRKDLRLHDNPSLLASLDNCST----FFPIYVLDMESARASKISANRWNFLCECL 280
Query: 64 EXXXXXXXXXXTCLYVLRGKAVDLLPKLFDDWQVKYLTCQVDIDPEFVQQDEYIEDIAEK 123
E + L+V+RG+A+D+LP+LF +W V LT + + +P Q+D I+ +AE
Sbjct: 281 EALDRQLRVLGSRLFVIRGRAIDVLPRLFHEWSVNRLTFERESEPAGRQRDTVIQMLAEN 340
Query: 124 KGVFINKRVQHTVYDVHKVLRENNGAVPLTYQKFLSLVKSINVKEPI--EISNVLSSHC- 180
V + + H +YD +VL N+G +P+T+ + + + P + + C
Sbjct: 341 ANVQLLQHNAHLLYDTDEVLETNDGKLPMTFDEMAKTAEQLGPPCPPCQTVDKTVFGACI 400
Query: 181 KPIDIQ-SENYSIPNLKELQIDEETLAPVK--YHGGETEALKRLNLYMSKKEWVCKFEKP 237
P+ + +E Y +P L + E A K + GGE EA++RLNL + K E KF++
Sbjct: 401 TPVGLDHAEKYGVPQLSDFGGKELGRATAKLFWKGGELEAMRRLNLALQKIE-ADKFDQQ 459
Query: 238 NSSPNSIEPSTTVLSPYISHGCLSAKLFYYKLKEVENGRQHTLPPVSLMGQLMWREFYYT 297
+ + + +EPS LSPY +GCLS + +Y++L+ + P + L+ RE +
Sbjct: 460 SVTIDDLEPSDMHLSPYFRYGCLSPRFYYHRLRVRFMKTKGFEPSTDVFKALLVRELFLH 519
Query: 298 AGTGVANFDKMVGNAICIQIPWTKNDAFLKAWAEGKTGYPFVDAIMRQLKQEGWIHHLAR 357
G+ + +M+GN + + PW + L W +G TG+P++DAIMRQL +GWIHHLAR
Sbjct: 520 IGSSNPDLHRMLGNPVSVMFPWEDDRTVLFRWKQGTTGFPWIDAIMRQLHAQGWIHHLAR 579
Query: 358 HMVACFLTRGDLWISWEEGAKIFEDYLLDYDWSLNAGNWMWLSASAFFYKYFRVYSPVAF 417
V CFLTRG LW+SWEEG K F++ LD +WSLNAGNW+WLS S++ + Y PV
Sbjct: 580 QAVGCFLTRGCLWVSWEEGFKAFDELQLDAEWSLNAGNWLWLSCSSYVHGAVPWYCPVEV 639
Query: 418 GQKTDKEGVYIKKYVPELKKYP 439
G+K D G YI+KYVPE+++ P
Sbjct: 640 GKKLDPTGKYIRKYVPEVRRLP 661
Score = 314 bits (771), Expect = 9e-86
Identities = 165/433 (38%), Positives = 238/433 (54%), Gaps = 11/433 (2%)
Query: 3 KTPTVIHWFRLDLRIHDNLALRNAINEAENRKHLLRPIYFLDPNI---KDKVGINRLRFL 59
KT +HWFR DLR+HDN +L A++ +++ +YFLDP+I KV L FL
Sbjct: 715 KTHNTMHWFRKDLRLHDNPSLLKALSGSQS----FYGVYFLDPDILAPSSKVSPRTLDFL 770
Query: 60 LQSLEXXXXXXXXXXTCLYVLRGKAVDLLPKLFDDWQVKYLTCQVDIDPEFVQQDEYIED 119
LQ L + L+V+R A+ LP L W + ++ + D DP V +D +
Sbjct: 771 LQCLRDLDDRLRGYGSRLFVIRECALSALPGLLKKWDITRMSFEADQDPHAVTRDVVAKQ 830
Query: 120 IAEKKGVFINKRVQHTVYDVHKVLRENNGAVPLTYQKFLSLVKSINVKEPI-EISNVLSS 178
IA GV + V HT++D + + G +P + F V S+ V+ P+ E+ L
Sbjct: 831 IAAGLGVEVISEVSHTIFDTVDIREASGGLMPQDFPSFQRAVSSLEVRTPVKEVDGSLIR 890
Query: 179 HCKP-IDIQSE-NYSIPNLKELQIDEETLAPVKYHGGETEALKRLNLYMSKKEWVCKFEK 236
C +D + Y + L + V + GGETE LKRL L ++K KF K
Sbjct: 891 QCVTCVDEDHDIRYGVAFGSSLGPKLKKAGRVHWKGGETEGLKRLELVLTKMRQK-KFIK 949
Query: 237 PNSSPNSIEPSTTVLSPYISHGCLSAKLFYYKLKEVENGRQHTLPPVSLMGQLMWREFYY 296
P S +++ S LSPY+ GCLS +L + PP +L L+WREF++
Sbjct: 950 PPLSADTLLASDRALSPYMRFGCLSPCYILDRLTTEYQRTMGSKPPETLYTNLLWREFFF 1009
Query: 297 TAGTGVANFDKMVGNAICIQIPWTKNDAFLKAWAEGKTGYPFVDAIMRQLKQEGWIHHLA 356
+ + +M+GN + +QIPW ++ L W +GKTG+P++DAIMRQL++EGWIHHLA
Sbjct: 1010 ATASTNPDHHRMMGNPLALQIPWEQHPEALSLWKQGKTGFPWIDAIMRQLREEGWIHHLA 1069
Query: 357 RHMVACFLTRGDLWISWEEGAKIFEDYLLDYDWSLNAGNWMWLSASAFFYKYFRVYSPVA 416
R V CFLTRG LW+SWEEG K F++ LD +WSLNAGNW+WLS S++ + Y PV
Sbjct: 1070 RQAVGCFLTRGCLWVSWEEGFKAFDELQLDAEWSLNAGNWLWLSCSSYVHGAVPWYCPVE 1129
Query: 417 FGQKTDKEGVYIK 429
G++ D G YI+
Sbjct: 1130 VGKQVDPTGEYIR 1142
Score = 198 bits (482), Expect = 1e-50
Identities = 84/163 (51%), Positives = 113/163 (69%)
Query: 279 TLPPVSLMGQLMWREFYYTAGTGVANFDKMVGNAICIQIPWTKNDAFLKAWAEGKTGYPF 338
++PP +L L+ RE + + A+ DKM+ N + +Q PW +N L+ W EGKTG+P+
Sbjct: 4 SIPPATLFTGLVRRELFLHVASHNADLDKMLDNPLSVQFPWEENKEGLERWKEGKTGFPW 63
Query: 339 VDAIMRQLKQEGWIHHLARHMVACFLTRGDLWISWEEGAKIFEDYLLDYDWSLNAGNWMW 398
+DAIMRQL++EGWIHHLAR V CFLTRG LW+SWEEG K F++ LD +WSLNA NW+W
Sbjct: 64 IDAIMRQLREEGWIHHLARQAVGCFLTRGCLWVSWEEGFKAFDELQLDAEWSLNASNWLW 123
Query: 399 LSASAFFYKYFRVYSPVAFGQKTDKEGVYIKKYVPELKKYPRE 441
LS S++ + Y PV G+K D G YIK+YVPE++ P E
Sbjct: 124 LSCSSYVHGAVPWYCPVEVGKKVDPTGDYIKRYVPEVRGLPSE 166
>SB_24027| Best HMM Match : FAD_binding_7 (HMM E-Value=0)
Length = 1074
Score = 320 bits (785), Expect = 2e-87
Identities = 169/442 (38%), Positives = 245/442 (55%), Gaps = 13/442 (2%)
Query: 8 IHWFRLDLRIHDNLALRNAINEAENRKHLLRPIYFLDPNIKDKVGI--NRLRFLLQSLEX 65
+HWFR DLR+HDN AL + + +YFLDP + + NR FLL+SL
Sbjct: 200 MHWFRKDLRLHDNPALLESFKNCQ----AFYGVYFLDPASVQRSNLSPNRWWFLLESLRD 255
Query: 66 XXXXXXXXXTCLYVLRGKAVDLLPKLFDDWQVKYLTCQVDIDPEFVQQDEYIEDIAEKKG 125
+ L V+RG+ V +PKL D W +K LT + D +P Q+D + +A+ G
Sbjct: 256 LDYNLRSLGSRLLVVRGQPVQEMPKLLDQWNIKRLTLEYDSEPPAKQRDAVVTHLAKNLG 315
Query: 126 VFINKRVQHTVYDVHKVLRE-NNGAVPLTYQKFLSLVKSI-NVKEPIEISNVLSSHCKPI 183
V + +RV HT+YDV V E T+ FL+ + + + +EP+++ + H +
Sbjct: 316 VEVIQRVSHTLYDVETVFEELYESDSYATWDGFLTFIDKLGSPEEPVDLIDWRMCHPTRL 375
Query: 184 DI---QSENYSIPNLKELQIDEETLAPVKY-HGGETEALKRLNLYMSKKEWVCKFEKPNS 239
+ N+ +P L EL I+ + + Y GGE L+RL LY+ + F +P
Sbjct: 376 SVPETSGSNFDVPTLHELGINPKKVTCDAYWKGGEGAGLERLKLYVVEATKQ-NFIQPPI 434
Query: 240 SPNSIEPSTTVLSPYISHGCLSAKLFYYKLKEVENGRQHTLPPVSLMGQLMWREFYYTAG 299
++ L PY+ GC+S + Y +L+ + PV + L+ REFY+
Sbjct: 435 CAEMLQVRKPHLGPYLRFGCVSPRHVYKELRNAYSQNYKMEAPVIVFESLLRREFYFYLS 494
Query: 300 TGVANFDKMVGNAICIQIPWTKNDAFLKAWAEGKTGYPFVDAIMRQLKQEGWIHHLARHM 359
+ +NF M N I +Q PW +N LK W EGKTG+P++DA+MRQL++EGWIHHLAR
Sbjct: 495 SANSNFCNMENNPISLQFPWEENKEGLKRWKEGKTGFPWIDAMMRQLREEGWIHHLARQA 554
Query: 360 VACFLTRGDLWISWEEGAKIFEDYLLDYDWSLNAGNWMWLSASAFFYKYFRVYSPVAFGQ 419
V CFLTRG LW+SWEEG K F++ LD +WSLNAGNW+WLS S++ Y PV G+
Sbjct: 555 VGCFLTRGCLWVSWEEGFKAFDELQLDAEWSLNAGNWLWLSCSSYVNGAVPWYCPVEVGK 614
Query: 420 KTDKEGVYIKKYVPELKKYPRE 441
+ D G YIK+YVPE++ P E
Sbjct: 615 QIDPTGDYIKRYVPEVRGLPSE 636
Score = 181 bits (441), Expect = 9e-46
Identities = 77/151 (50%), Positives = 104/151 (68%)
Query: 279 TLPPVSLMGQLMWREFYYTAGTGVANFDKMVGNAICIQIPWTKNDAFLKAWAEGKTGYPF 338
++PP +L L+ RE + + A+ DKMV N + +Q PW +N L+ W +GKTG+P+
Sbjct: 924 SIPPATLFTGLVRRELFLHVASHNADLDKMVDNPLSVQFPWEENREGLERWKKGKTGFPW 983
Query: 339 VDAIMRQLKQEGWIHHLARHMVACFLTRGDLWISWEEGAKIFEDYLLDYDWSLNAGNWMW 398
+DA+MRQL++EGWIHHLAR V CFLTRG LW+SWEEG K F++ LD +WSLNA NW+W
Sbjct: 984 IDAMMRQLREEGWIHHLARQAVGCFLTRGCLWVSWEEGFKAFDELQLDAEWSLNASNWLW 1043
Query: 399 LSASAFFYKYFRVYSPVAFGQKTDKEGVYIK 429
LS S++ + Y PV G+K D G YIK
Sbjct: 1044 LSCSSYVHGAVPWYCPVEVGKKVDPTGDYIK 1074
Score = 149 bits (362), Expect = 3e-36
Identities = 64/135 (47%), Positives = 88/135 (65%)
Query: 307 KMVGNAICIQIPWTKNDAFLKAWAEGKTGYPFVDAIMRQLKQEGWIHHLARHMVACFLTR 366
K GN+ C+Q+PW + A L+ +G TG+P++DAI+RQL+QEGW+H +A+ V CFLT
Sbjct: 3 KTEGNSYCLQVPWRSDQAILERLRQGMTGFPWIDAIIRQLRQEGWVHDVAQQAVGCFLTW 62
Query: 367 GDLWISWEEGAKIFEDYLLDYDWSLNAGNWMWLSASAFFYKYFRVYSPVAFGQKTDKEGV 426
G LW SWEEG K+F + +LD WS NA NW+ +S S + PV G+ D G
Sbjct: 63 GTLWQSWEEGFKLFGELMLDAGWSRNAFNWLNMSNSMLADGPLPYFCPVDVGKAIDPSGR 122
Query: 427 YIKKYVPELKKYPRE 441
YI+KY+PEL +P E
Sbjct: 123 YIRKYIPELASFPSE 137
Score = 123 bits (296), Expect = 3e-28
Identities = 74/232 (31%), Positives = 120/232 (51%), Gaps = 12/232 (5%)
Query: 6 TVIHWFRLDLRIHDNLALRNAINEAENRKHLLRPIYFLDPNIK--DKVGINRLRFLLQSL 63
T +HWFR DLR+HDN +L +++ PIY LD K+ NR FL + L
Sbjct: 695 TSVHWFRKDLRLHDNPSLLASLDNCST----FFPIYVLDMESARASKISANRWNFLCECL 750
Query: 64 EXXXXXXXXXXTCLYVLRGKAVDLLPKLFDDWQVKYLTCQVDIDPEFVQQDEYIEDIAEK 123
E + L+V+RG+A+D+LP+LF +W V LT + + +P Q+D I+ +AEK
Sbjct: 751 EALDRQLRVLGSRLFVIRGRAMDVLPRLFHEWSVNRLTFERESEPAGRQRDAVIQMLAEK 810
Query: 124 KGVFINKRVQHTVYDVHKVLRENNGAVPLTYQKFLSLVKSINVKEP--IEISNVLSSHC- 180
V + + H +YD +VL N+G +P+T+ + + + P + + C
Sbjct: 811 ANVQVLQHNAHLLYDTDEVLETNDGKLPMTFDEMAKTAEQLGPPCPPCQTVDKTVFGACL 870
Query: 181 KPI-DIQSENYSIPNLKELQIDE--ETLAPVKYHGGETEALKRLNLYMSKKE 229
P+ ++ Y +P L E + E E A + GGE EAL+RL+ + K++
Sbjct: 871 TPVGPDHADKYGVPLLSEFGMKELKEATAKKYWTGGEPEALRRLSAALKKEK 922
>SB_6930| Best HMM Match : FAD_binding_7 (HMM E-Value=0)
Length = 506
Score = 282 bits (691), Expect = 5e-76
Identities = 113/164 (68%), Positives = 142/164 (86%)
Query: 276 RQHTLPPVSLMGQLMWREFYYTAGTGVANFDKMVGNAICIQIPWTKNDAFLKAWAEGKTG 335
++H+ PPVSL GQL+WREF+ TA NF+KMVGN++C+Q+PW +ND +L AWAE +TG
Sbjct: 249 KKHSQPPVSLHGQLLWREFFTTAAYKTPNFNKMVGNSLCLQVPWDQNDEYLAAWAEARTG 308
Query: 336 YPFVDAIMRQLKQEGWIHHLARHMVACFLTRGDLWISWEEGAKIFEDYLLDYDWSLNAGN 395
YP++DAIM QL++EGW+HHLARH VACFLTRGDLWISWEEG K+FE L+D+DW+LNAGN
Sbjct: 309 YPYIDAIMTQLRREGWVHHLARHSVACFLTRGDLWISWEEGLKVFERLLIDHDWNLNAGN 368
Query: 396 WMWLSASAFFYKYFRVYSPVAFGQKTDKEGVYIKKYVPELKKYP 439
WMWLSAS+FF+ YFRVYSPVAFG+KTD G YI+KY+P+L +YP
Sbjct: 369 WMWLSASSFFHAYFRVYSPVAFGKKTDPNGDYIRKYIPKLSRYP 412
Score = 101 bits (243), Expect = 9e-22
Identities = 68/209 (32%), Positives = 108/209 (51%), Gaps = 21/209 (10%)
Query: 25 NAINEAENRKHLLRPIYFLDPNI--KDKVGINRLRFLLQSLEXXXXXXXXXXTCLYVLRG 82
+A+ EA +RP+Y LDP++ +G+ R RF+L+SL + L+V+RG
Sbjct: 57 SALKEAFETSQTVRPLYVLDPDVLKNGNIGVVRWRFILESLADLDNNLKKLNSRLFVVRG 116
Query: 83 KAVDLLPKLFDDWQVKYLTCQVDIDPEFVQQDEYIEDIAEKKGVFINKRVQHTVYDVHKV 142
+ ++ PKLF +W++ LT +VD +QD + IA K GV I +RV HT+YD+
Sbjct: 117 RPSEVFPKLFKEWKISKLTFEVDTTEPARKQDAEVLKIANKLGVDIEQRVSHTLYDLDSF 176
Query: 143 LRENNGAVPLTYQKFLSLVKSINVKEPIEISNVLSSHCKPIDIQSENYSIPNLKEL--QI 200
+ K +V N + ++H K Y +P L+E+ ++
Sbjct: 177 FTRSPCCTLPAIDK--KMVAGCN-------TPTTANHDK-------IYGVPTLEEIGQEV 220
Query: 201 DEETLAPVKYHGGETEALKRLNLYMSKKE 229
EE+ V Y GGETEAL+RL +YM K++
Sbjct: 221 PEES-REVLYPGGETEALERLEVYMKKEK 248
>SB_10209| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 798
Score = 195 bits (476), Expect = 5e-50
Identities = 114/332 (34%), Positives = 174/332 (52%), Gaps = 12/332 (3%)
Query: 7 VIHWFRLDLRIHDNLALRNAINEAENRKHLLRPIYFLDPN-IKDK-VGINRLRFLLQSLE 64
VIHWFR DLR+HDN AL + + +Y LDPN IK V NR FLLQ L
Sbjct: 354 VIHWFRKDLRLHDNPALLDGLKNCR----AFYGVYILDPNNIKAAIVSANRWNFLLQCLA 409
Query: 65 XXXXXXXXXXTCLYVLRGKAVDLLPKLFDDWQVKYLTCQVDIDPEFVQQDEYIEDIAEKK 124
T LYV RG+ + P++F++W + LT + + +P ++D I+ +AE+
Sbjct: 410 DLDNNLKKCGTRLYVFRGQPTTVFPQMFNEWNITKLTFESECEPFGQRRDVAIQSLAEEF 469
Query: 125 GVFINKRVQHTVYDVHKVLRENNGAVPLTYQKFLSLVKSINVKE-PIEI---SNVLSSHC 180
GV ++ + H++Y + ++L N G P+ ++ F ++V+ + E P+E + ++ C
Sbjct: 470 GVKVSCKPSHSLYSIEQILEMNEGKPPVLFKDFEAIVRKLGPPENPVESITRKSFMNCIC 529
Query: 181 KPIDIQSENYSIPNLKELQIDE-ETLAPVKYHGGETEALKRLNLYMSKKEWVCKFEKPNS 239
SE + +P+L EL I + + GGE EAL RL + + K K
Sbjct: 530 PITSTHSEKFGVPSLAELGIKPADVTCGDMWVGGEREALNRLGI-LEDKILGSNSSKNCD 588
Query: 240 SPNSIEPSTTVLSPYISHGCLSAKLFYYKLKEVENGRQHTLPPVSLMGQLMWREFYYTAG 299
+ + PS T LSPY+ GCLS KL+Y KL Q + PP+SL QL+WREF++T
Sbjct: 589 GSSVLFPSRTQLSPYLRFGCLSPKLYYKKLTGAYVKMQFSPPPMSLYRQLIWREFFFTLA 648
Query: 300 TGVANFDKMVGNAICIQIPWTKNDAFLKAWAE 331
+ N D++ N +CIQI W +N W +
Sbjct: 649 SKNPNMDQVNDNPLCIQISWEENKDHFLCWKQ 680
Score = 175 bits (427), Expect = 4e-44
Identities = 95/284 (33%), Positives = 157/284 (55%), Gaps = 9/284 (3%)
Query: 85 VDLLPKLFDDWQVKYLTCQVDIDPEFVQQDEYIEDIAEKKGVFINKRVQHTVYDVHKVLR 144
+D+ PKL W + LT + D +P Q+D ++ IAEK GV + HT+YD+ ++
Sbjct: 4 IDVCPKLIKQWNISRLTFEYDSEPFPRQRDLAVKRIAEKAGVDVIVCSSHTLYDIEWMIG 63
Query: 145 ENNGAVPLTYQKFLSLVKSINVKEPI--EISNVLSSHCK-PIDIQSEN-YSIPNLKELQI 200
+N+G P+T+++F L++ + + L C P+D + E + IP+L +L +
Sbjct: 64 KNDGLPPITFKQFQKLLQGSGLPSHCVKTVDENLFGDCTTPLDNEHERLFGIPSLGDLGL 123
Query: 201 DEETLAPVKYHGGETEALKRLNLYMSKKEWVCKFEKPNSSPNSIEPSTTVLSPYISHGCL 260
+ + GGE ALKRL + K+ +K + +P PS+T LSPY+ GCL
Sbjct: 124 SFTPEESI-WKGGENAALKRLET-VEKELLEGVSDKESYAPF---PSSTKLSPYLRLGCL 178
Query: 261 SAKLFYYKLKEVENGRQHTLPPVSLMGQLMWREFYYTAGTGVANFDKMVGNAICIQIPWT 320
SA+ ++ + ++ + L+WR+FY+ + DKM N +C+Q PW
Sbjct: 179 SARRVFHTASAINAKANNSSLAHGIQTSLLWRDFYFVLASRNQALDKMHDNNMCMQFPWV 238
Query: 321 KNDAFLKAWAEGKTGYPFVDAIMRQLKQEGWIHHLARHMVACFL 364
+ + +L W GKTG+P++DAI+RQL+QEGWIHHLAR + ++
Sbjct: 239 EREDWLDQWRHGKTGFPWIDAIIRQLRQEGWIHHLARQSIGKYV 282
Score = 79.0 bits (186), Expect = 7e-15
Identities = 36/76 (47%), Positives = 48/76 (63%), Gaps = 7/76 (9%)
Query: 371 ISWEEGA-------KIFEDYLLDYDWSLNAGNWMWLSASAFFYKYFRVYSPVAFGQKTDK 423
ISWEE + FE+ LD +WS+N+G+W+WLS SAFF+ + PV G+K D
Sbjct: 666 ISWEENKDHFLCWKQAFEELQLDAEWSMNSGSWLWLSCSAFFHGQIPWFCPVEVGKKLDP 725
Query: 424 EGVYIKKYVPELKKYP 439
G YI+KYVPEL+ P
Sbjct: 726 SGSYIRKYVPELRSMP 741
>SB_24026| Best HMM Match : FAD_binding_7 (HMM E-Value=1.1e-13)
Length = 184
Score = 183 bits (446), Expect = 2e-46
Identities = 78/151 (51%), Positives = 104/151 (68%)
Query: 279 TLPPVSLMGQLMWREFYYTAGTGVANFDKMVGNAICIQIPWTKNDAFLKAWAEGKTGYPF 338
++PP +L L+ RE + + A+ DKM+ N + +Q PW +N L+ W EGKTG+P+
Sbjct: 34 SIPPATLFTGLVRRELFLHVASHNADLDKMLDNPLSVQFPWEENKEGLERWKEGKTGFPW 93
Query: 339 VDAIMRQLKQEGWIHHLARHMVACFLTRGDLWISWEEGAKIFEDYLLDYDWSLNAGNWMW 398
+DAIMRQL++EGWIHHLAR V CFLTRG LW+SWEEG K F++ LD +WSLNA NW+W
Sbjct: 94 IDAIMRQLREEGWIHHLARQAVGCFLTRGCLWVSWEEGFKAFDELQLDAEWSLNASNWLW 153
Query: 399 LSASAFFYKYFRVYSPVAFGQKTDKEGVYIK 429
LS S++ + Y PV G+K D G YIK
Sbjct: 154 LSCSSYVHGAVPWYCPVEVGKKVDPTGDYIK 184
>SB_51314| Best HMM Match : FAD_binding_7 (HMM E-Value=0)
Length = 524
Score = 170 bits (413), Expect = 2e-42
Identities = 132/457 (28%), Positives = 220/457 (48%), Gaps = 29/457 (6%)
Query: 2 SKTP-TVIHWFRLDLRIHDNLALRNAINEAENRKHLLRPIYFLDPN--------IKDKVG 52
SKT TVI R DLR HDN AL A A+ + P+Y DP+ K
Sbjct: 4 SKTQKTVICLLRNDLRYHDNEALLWAHKNAD----FVLPLYCFDPDHYKTTWRFSLPKTA 59
Query: 53 INRLRFLLQSLEXXXXXXXXXXTCLYVLRGKAVDLLPKLFDDWQ----VKYLTCQVDIDP 108
R +FLL+S+ + L + + + ++ + KL + + V + Q ++
Sbjct: 60 QYRAKFLLESVTDLRSTLQIHGSNLIIRQCQPLEAVTKLTELLKPVAPVTSIVFQQEVTY 119
Query: 109 EFVQQDEYIEDIAEKKGVFINKRVQHTVYDVHKVLRENNGAVPLTYQKFLSLVKSINVKE 168
E + ++ + + +K G+ ++ T++ + + VP TY +F K + +
Sbjct: 120 EELNVEKALVEFCKKSGIHMHTIWGSTLFHKDDIPYKAK-TVPDTYTQFR---KGVENQS 175
Query: 169 PIEISNVLSSHCKPID-IQSENYSIPNLKELQIDEETL-----APVKYHGGETEALKRLN 222
+ + + KP+ ++ E +IP+LK L D E + + GGE EAL RL
Sbjct: 176 TVRNLIDMPKNLKPLPPVKGELGTIPDLKSLLNDSEIKEVDQRSAFPFMGGEQEALSRLG 235
Query: 223 LYMSKKEWVCKFEKPNSSPNSIEPSTTVLSPYISHGCLSAKLFYYKLKEVENGRQHTLPP 282
Y+ + V K+++ + E +T LSP++++G LS ++ Y+++K+ E R
Sbjct: 236 SYLWGTDSVAKYKETRNGLLG-ENYSTKLSPWLANGSLSPRMVYHRIKQYEEERVANHST 294
Query: 283 VSLMGQLMWREFYYTAGTGVANFDKMVGNAICIQIPWTKNDAFLKAWAEGKTGYPFVDAI 342
++ +L+WR+++ + + +PW + K W EGKTG PFVDA
Sbjct: 295 YWVLFELIWRDYFKFVCLKYGDRVFYRSGIMGKSLPWKHDKMTFKLWCEGKTGVPFVDAN 354
Query: 343 MRQLKQEGWIHHLARHMVACFLTRGDLWISWEEGAKIFEDYLLDYDWSLNAGNWMWLSAS 402
MR+LK+ GW+ + R VA FL + DL + W GA+ FE LLD+D N GNW + +
Sbjct: 355 MRELKETGWMSNRGRQNVASFLIK-DLGLDWRYGAEWFESLLLDHDVCSNYGNWNYAAGI 413
Query: 403 AFFYKYFRVYSPVAFGQKTDKEGVYIKKYVPELKKYP 439
+ R ++ V G D +G YIK +VPEL K P
Sbjct: 414 GNDPREGRKFNMVKQGLDYDPDGDYIKTWVPELAKIP 450
>SB_24028| Best HMM Match : DNA_photolyase (HMM E-Value=1.3e-39)
Length = 432
Score = 120 bits (290), Expect = 2e-27
Identities = 81/271 (29%), Positives = 130/271 (47%), Gaps = 16/271 (5%)
Query: 6 TVIHWFRLDLRIHDNLALRNAINEAENRKHLLRPIYFLDPNIKDKVGINRLRFLLQSLEX 65
T HWFR DLR+HDN AL++A++ A+ ++ L NR +FLLQ L+
Sbjct: 7 TSCHWFRKDLRLHDNPALKDALDNAD----CFYGVFVLSNFHPSITSGNRWKFLLQCLQD 62
Query: 66 XXXXXXXXXTCLYVLRGKAVDLLPKLFDDWQVKYLTCQVDIDPEFVQQDEYIEDIAEKKG 125
+ L +L G V++ PKL +V LT +VD +P Q+D I IA G
Sbjct: 63 LNNSLEELGSKLIILTGSPVEIFPKLLHSLKVTKLTFEVDTEPFAQQRDSVISHIARSAG 122
Query: 126 VFINKRVQHTVYDVHKVLRENNGAVPLTYQKFLSLVKSINVKEPIEISNVLSSHCKPIDI 185
+ + HT+YD+ ++ N +PL + +FL ++ I++ PI + V C +
Sbjct: 123 IEVKTHASHTLYDIESLVSHCNENIPLVFDEFLEMISGISL-PPIPVLEVKQVPCLQLKY 181
Query: 186 QSENYS-----IPNLKELQIDEETLAPVKYHGGETEALKRLNLYMSKKEWVCKFEKPNSS 240
+ S I +LK++ ++ + GGET L++L Y+ ++ V P
Sbjct: 182 LNSLGSTGIKVISSLKDVPCNQNEST---WEGGETVGLQKLEEYL--QQMVRNGFLPEVI 236
Query: 241 PNSIEPSTT-VLSPYISHGCLSAKLFYYKLK 270
+ S VL PY+ GCLS + Y+ LK
Sbjct: 237 DADVLMSNKGVLCPYLRFGCLSPRTVYFTLK 267
>SB_21201| Best HMM Match : FAD_binding_7 (HMM E-Value=1.3e-05)
Length = 142
Score = 75.8 bits (178), Expect = 7e-14
Identities = 31/61 (50%), Positives = 41/61 (67%)
Query: 379 IFEDYLLDYDWSLNAGNWMWLSASAFFYKYFRVYSPVAFGQKTDKEGVYIKKYVPELKKY 438
+F ++LLD DWS NAGNWMW S SAF ++F PV F + D G Y++KY+P LK +
Sbjct: 1 VFAEHLLDADWSSNAGNWMWWSYSAFSQQFFNPPCPVEFSKSLDASGDYVRKYLPVLKGF 60
Query: 439 P 439
P
Sbjct: 61 P 61
>SB_31640| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3003
Score = 31.9 bits (69), Expect = 1.1
Identities = 26/81 (32%), Positives = 40/81 (49%), Gaps = 6/81 (7%)
Query: 103 QVDIDPEFVQQDEYIEDIAEKKGVFINKRVQHTVYDVHKVLRENNGAVPLTYQKFLSLVK 162
QV DP F + I IA+K+G+ ++ +Q DV +VL E++ L F++ VK
Sbjct: 2500 QVSNDPRFDSYAQEITQIAKKQGLKVDLHMQEYSLDVTEVLDESSVEGNLVLD-FMTQVK 2558
Query: 163 SI-----NVKEPIEISNVLSS 178
NV E + + LSS
Sbjct: 2559 GFRALTENVHEILSLIEELSS 2579
>SB_21709| Best HMM Match : F5_F8_type_C (HMM E-Value=8.7e-21)
Length = 532
Score = 31.1 bits (67), Expect = 1.9
Identities = 12/28 (42%), Positives = 18/28 (64%)
Query: 366 RGDLWISWEEGAKIFEDYLLDYDWSLNA 393
RGDLW+ E GA++ +++LL W A
Sbjct: 421 RGDLWMREESGAEVTKNWLLSAAWCARA 448
>SB_58662| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 467
Score = 30.7 bits (66), Expect = 2.5
Identities = 19/70 (27%), Positives = 31/70 (44%), Gaps = 2/70 (2%)
Query: 163 SINVKEPIEISNVLSSHCKPIDIQSENYSIPNLKELQIDEETLAPVKYHGGET--EALKR 220
S+N K I L C ++ + EN +P L + Q+ E GET + LKR
Sbjct: 371 SLNTKSETVIDKTLKCKCTLLEHKQENVKLPALSQRQLQESGFYQPANIFGETRGKRLKR 430
Query: 221 LNLYMSKKEW 230
++ ++ W
Sbjct: 431 ESVKKAENLW 440
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.321 0.138 0.431
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,487,388
Number of Sequences: 59808
Number of extensions: 653982
Number of successful extensions: 1371
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 1322
Number of HSP's gapped (non-prelim): 24
length of query: 441
length of database: 16,821,457
effective HSP length: 84
effective length of query: 357
effective length of database: 11,797,585
effective search space: 4211737845
effective search space used: 4211737845
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 61 (28.7 bits)
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