GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000221-TA|BGIBMGA000221-PA|IPR006050|DNA photolyase,
N-terminal, IPR005101|DNA photolyase, FAD-binding, IPR006051|DNA
photolyase, FAD- binding N-terminal
         (441 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.    435   e-124
AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.      24   2.2  

>EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.
          Length = 570

 Score =  435 bits (1072), Expect = e-124
 Identities = 203/438 (46%), Positives = 283/438 (64%), Gaps = 10/438 (2%)

Query: 8   IHWFRLDLRIHDNLALRNAINEAENRKHLLRPIYFLDPNI--KDKVGINRLRFLLQSLEX 65
           +HWFR  LR+HDN +LR  +  A       R ++ LDP       +GIN+ RFLLQ LE 
Sbjct: 24  VHWFRKGLRLHDNPSLREGLAGAST----FRCVFVLDPWFAGSTNIGINKWRFLLQCLED 79

Query: 66  XXXXXXXXXTCLYVLRGKAVDLLPKLFDDWQVKYLTCQVDIDPEFVQQDEYIEDIAEKKG 125
                    + L+V+RG+  D LPKLF +W    LT + D +P    +D  I  + ++ G
Sbjct: 80  LDCSLRKLNSRLFVIRGQPADALPKLFKEWGTTNLTFEEDPEPFGRVRDHNISALCKELG 139

Query: 126 VFINKRVQHTVYDVHKVLRENNGAVPLTYQKFLSLVKSINVKEP----IEISNVLSSHCK 181
           + + ++V HT+Y + +++  N    PLTY +F ++V S++  EP    +  + V S++  
Sbjct: 140 ISVVQKVSHTLYKLDEIIERNGDKPPLTYHQFQTVVASMDPPEPPVPTVTSACVGSAYTP 199

Query: 182 PIDIQSENYSIPNLKELQIDEETLAPVKYHGGETEALKRLNLYMSKKEWVCKFEKPNSSP 241
             +   ++Y +P L+EL  D E L P  + GGE+EAL RL  ++ +K WV  F +P  +P
Sbjct: 200 LKEDHDDHYGVPTLEELGFDTEGLLPPVWVGGESEALARLERHLERKAWVASFGRPKMTP 259

Query: 242 NSIEPSTTVLSPYISHGCLSAKLFYYKLKEVENGRQHTLPPVSLMGQLMWREFYYTAGTG 301
            S+ PS T LSPY+  GCLS +LFYY+L ++    +  +PP+SL GQL+WREF+Y A T 
Sbjct: 260 QSLLPSQTGLSPYLRFGCLSTRLFYYQLTDLYKKIKKAVPPLSLHGQLLWREFFYCAATK 319

Query: 302 VANFDKMVGNAICIQIPWTKNDAFLKAWAEGKTGYPFVDAIMRQLKQEGWIHHLARHMVA 361
             NFD+M GN IC+QIPW KN   L  WA G+TG+P++DAIM QL++EGWIHHLARH VA
Sbjct: 320 NPNFDRMQGNPICVQIPWDKNVEALAKWANGQTGFPWIDAIMTQLREEGWIHHLARHAVA 379

Query: 362 CFLTRGDLWISWEEGAKIFEDYLLDYDWSLNAGNWMWLSASAFFYKYFRVYSPVAFGQKT 421
           CFLTRGDLWISWEEG K+F++ LLD DWS+NAG WMWLS S+FF ++F  Y PV FG+K 
Sbjct: 380 CFLTRGDLWISWEEGMKVFDELLLDADWSVNAGMWMWLSCSSFFQQFFHCYCPVRFGRKA 439

Query: 422 DKEGVYIKKYVPELKKYP 439
           D  G YI++Y+P LK +P
Sbjct: 440 DPNGDYIRRYLPVLKNFP 457


>AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.
          Length = 683

 Score = 24.2 bits (50), Expect = 2.2
 Identities = 37/187 (19%), Positives = 76/187 (40%), Gaps = 9/187 (4%)

Query: 144 RENNGAVPLTYQKFLSLVKSIN--VKEPIEISNVLSSHCKPIDIQSENYSIPNLKELQID 201
           RE    VPL  QK++ ++  ++  +   I++  V+ S+   + + ++   +  L  +   
Sbjct: 309 RETGATVPLHMQKYVQMIHDLHTRISTAIDLGYVVDSYGNHVKLYTKQ-GLNVLGNIVQG 367

Query: 202 EETLAPVKYHGGETEALKRLNLYMSKKEWVCKFEKPNSSPNSIEPSTTVLSPYISHGCLS 261
                 V+ + G+ + L R  L    +  V    K    P++++  +T L   +      
Sbjct: 368 NGDSVNVQLY-GQLDLLVRKVLGFGYESNV----KYQVVPSALQMWSTSLRDPVFFSIYK 422

Query: 262 AKLFYYKLKEVENGRQHTLPPVSLMGQLMWREFYYTAGTGVANFDKMVGNAICIQIPWTK 321
             L YY  K  EN  ++T   ++  G  +         T   +F+ M+ N + IQ     
Sbjct: 423 TILDYYH-KYKENLPKYTTEELNFPGVSIESVTVDKLITYFDHFESMLNNGVSIQSHAKA 481

Query: 322 NDAFLKA 328
            +  +KA
Sbjct: 482 KNTMIKA 488


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.321    0.138    0.431 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 134,679
Number of Sequences: 429
Number of extensions: 5999
Number of successful extensions: 13
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 9
Number of HSP's gapped (non-prelim): 2
length of query: 441
length of database: 140,377
effective HSP length: 60
effective length of query: 381
effective length of database: 114,637
effective search space: 43676697
effective search space used: 43676697
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 45 (22.2 bits)