Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000221-TA|BGIBMGA000221-PA|IPR006050|DNA photolyase,
N-terminal, IPR005101|DNA photolyase, FAD-binding, IPR006051|DNA
photolyase, FAD- binding N-terminal
(441 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g15620.1 68416.m01981 6-4 photolyase (UVR3) identical to 6-4 ... 402 e-112
At5g24850.1 68418.m02938 cryptochrome dash (CRYD) nearly identic... 151 7e-37
At1g04400.2 68414.m00431 cryptochrome 2 apoprotein (CRY2) / blue... 105 6e-23
At1g04400.1 68414.m00430 cryptochrome 2 apoprotein (CRY2) / blue... 105 6e-23
At4g08920.1 68417.m01469 cryptochrome 1 apoprotein (CRY1) / flav... 97 3e-20
At2g47590.1 68415.m05938 photolyase/blue light photoreceptor (PH... 67 3e-11
At3g60440.1 68416.m06760 expressed protein 33 0.38
At1g12370.2 68414.m01430 type II CPD photolyase PHR1 (PHR1) near... 33 0.50
At1g12370.1 68414.m01429 type II CPD photolyase PHR1 (PHR1) near... 33 0.50
At4g25290.1 68417.m03637 deoxyribodipyrimidine photolyase family... 32 0.66
At1g15700.1 68414.m01884 ATP synthase gamma chain 2, chloroplast... 30 3.5
>At3g15620.1 68416.m01981 6-4 photolyase (UVR3) identical to 6-4
photolyase (UVR3) GB:AB003687 [Arabidopsis thaliana]
(Nucleic Acids Res. 26 (2), 638-644 (1998))
Length = 556
Score = 402 bits (989), Expect = e-112
Identities = 196/448 (43%), Positives = 286/448 (63%), Gaps = 22/448 (4%)
Query: 10 WFRLDLRIHDNLALRNAINEAENRKHLLRPIYFLDPNIKD-----------KVGINRLRF 58
WFR LR+HDN AL A +E + P++ +DP+ + + G+NR+RF
Sbjct: 29 WFRKGLRVHDNPALEYASKGSE----FMYPVFVIDPHYMESDPSAFSPGSSRAGVNRIRF 84
Query: 59 LLQSLEXXXXXXXXXXTCLYVLRGKAVDLLPKLFDDWQVKYLTCQVDIDPEFVQQDEYIE 118
LL+SL+ + L V +G+ ++L + +W+VK L + D DP + D ++
Sbjct: 85 LLESLKDLDSSLKKLGSRLLVFKGEPGEVLVRCLQEWKVKRLCFEYDTDPYYQALDVKVK 144
Query: 119 DIAEKKGVFINKRVQHTVYDVHKVLRENNGAVPLTYQKFLSLVKSINVKEPIEISNVLSS 178
D A GV + V HT+++ ++ +N G PL+YQ FL + + + + + S
Sbjct: 145 DYASSTGVEVFSPVSHTLFNPAHIIEKNGGKPPLSYQSFLKVAGEPSCAKSELVMSY--S 202
Query: 179 HCKPI-DIQSENYS-IPNLKELQI-DEETLAPVKYHGGETEALKRLNLYMSKKEWVCKFE 235
PI DI + S +P+L+EL D+E + GGE+EALKRL +S K WV FE
Sbjct: 203 SLPPIGDIGNLGISEVPSLEELGYKDDEQADWTPFRGGESEALKRLTKSISDKAWVANFE 262
Query: 236 KPNSSPNS-IEPSTTVLSPYISHGCLSAKLFYYKLKEV-ENGRQHTLPPVSLMGQLMWRE 293
KP P++ ++P+TTV+SPY+ GCLS++ FY L+ + ++ ++HT PPVSL+GQL+WRE
Sbjct: 263 KPKGDPSAFLKPATTVMSPYLKFGCLSSRYFYQCLQNIYKDVKKHTSPPVSLLGQLLWRE 322
Query: 294 FYYTAGTGVANFDKMVGNAICIQIPWTKNDAFLKAWAEGKTGYPFVDAIMRQLKQEGWIH 353
F+YT G NFDKM GN IC QIPW ++ A L AW +GKTGYP++DAIM QL + GW+H
Sbjct: 323 FFYTTAFGTPNFDKMKGNRICKQIPWNEDHAMLAAWRDGKTGYPWIDAIMVQLLKWGWMH 382
Query: 354 HLARHMVACFLTRGDLWISWEEGAKIFEDYLLDYDWSLNAGNWMWLSASAFFYKYFRVYS 413
HLARH VACFLTRGDL+I WE+G +FE L+D DW++N GNWMWLS S+FFY++ R+YS
Sbjct: 383 HLARHCVACFLTRGDLFIHWEQGRDVFERLLIDSDWAINNGNWMWLSCSSFFYQFNRIYS 442
Query: 414 PVAFGQKTDKEGVYIKKYVPELKKYPRE 441
P++FG+K D +G YI+ ++P LK P++
Sbjct: 443 PISFGKKYDPDGKYIRHFLPVLKDMPKQ 470
>At5g24850.1 68418.m02938 cryptochrome dash (CRYD) nearly identical
to cryptochrome dash [Arabidopsis thaliana] GI:28971609;
similar to Deoxyribodipyrimidine photolyase (DNA
photolyase) (Photoreactivating
enzyme)(SP:Q55081){Synechocystis sp.}
Length = 526
Score = 151 bits (367), Expect = 7e-37
Identities = 114/444 (25%), Positives = 204/444 (45%), Gaps = 19/444 (4%)
Query: 8 IHWFRLDLRIHDNLALRNAINEAENRKHLLRPIYFLDPNIKD--------KVGINRLRFL 59
I WFR DLR+ DN AL A + ++ + P+Y LDP + K G R FL
Sbjct: 44 ILWFRNDLRVLDNDALYKAWSSSDT----ILPVYCLDPRLFHTTHFFNFPKTGALRGGFL 99
Query: 60 LQSLEXXXXXXXXXXTCLYVLRGKAVDLLPKLFDDWQVKYLTCQVDIDPEFVQQDEYIED 119
++ L L + GK ++LP L D+ + + + E V + +
Sbjct: 100 MECLVDLRKNLMKRGLNLLIRSGKPEEILPSLAKDFGARTVFAHKETCSEEVDVERLVNQ 159
Query: 120 IAEKKGVFINKRVQHTVYDVHKV-LRENNGAVPLTYQKFLSLVKSINVKEPIEISNVLSS 178
++ G + HK L + +P Y +F KS+ K I S +
Sbjct: 160 GLKRVGNSTKLELIWGSTMYHKDDLPFDVFDLPDVYTQFR---KSVEAKCSIRSSTRIPL 216
Query: 179 HCKPIDIQSENYSIPNLKELQID-EETLAPVKYHGGETEALKRLNLYMSKKEWVCKFEKP 237
P + +P L++L ++ +E +++ GGE+ + R+ Y KK+ + +++
Sbjct: 217 SLGPTPSVDDWGDVPTLEKLGVEPQEVTRGMRFVGGESAGVGRVFEYFWKKDLLKVYKET 276
Query: 238 NSSPNSIEPSTTVLSPYISHGCLSAKLFYYKLKEVENGRQHTLPPVSLMGQLMWREFYYT 297
+ + ST SP+++ GC+S + Y +++ E R ++ +L+WR+++
Sbjct: 277 RNGMLGPDYSTK-FSPWLAFGCISPRFIYEEVQRYEKERVANNSTYWVLFELIWRDYFRF 335
Query: 298 AGTGVANFDKMVGNAICIQIPWTKNDAFLKAWAEGKTGYPFVDAIMRQLKQEGWIHHLAR 357
N +G +Q W+++ ++W + KTGYP +DA M++L G++ + R
Sbjct: 336 LSIKCGNSLFHLGGPRNVQGKWSQDQKLFESWRDAKTGYPLIDANMKELSTTGFMSNRGR 395
Query: 358 HMVACFLTRGDLWISWEEGAKIFEDYLLDYDWSLNAGNWMWLSASAFFYKYFRVYSPVAF 417
+V FL R D+ + W GA+ FE LLDYD N GNW + + + R +S
Sbjct: 396 QIVCSFLVR-DMGLDWRMGAEWFETCLLDYDPCSNYGNWTYGAGVGNDPREDRYFSIPKQ 454
Query: 418 GQKTDKEGVYIKKYVPELKKYPRE 441
Q D EG Y+ ++ +L++ P+E
Sbjct: 455 AQNYDPEGEYVAFWLQQLRRLPKE 478
>At1g04400.2 68414.m00431 cryptochrome 2 apoprotein (CRY2) / blue
light photoreceptor (PHH1) 97% identical to photolysase
(PHH1) (SP:Q96524) and cryptochrome 2 apoprotein (CRY2)
(SP:U43397). ESTs gb|W43661 and gb|Z25638 come from this
gene; contains Pfam profiles PF03441: FAD binding domain
of DNA photolyase and PF00875: deoxyribodipyrimidine
photolyase; identical to cDNA Cvi cryptochrome 2 (CRY2)
GI:18026275
Length = 612
Score = 105 bits (252), Expect = 6e-23
Identities = 112/460 (24%), Positives = 202/460 (43%), Gaps = 36/460 (7%)
Query: 1 MSKTPTVIHWFRLDLRIHDNLALRNAINEAENRKHLLRPIYFLDPNIKDKVGINRLR--F 58
M I WFR DLRI DN AL A +E + P++ P + + R +
Sbjct: 1 MKMDKKTIVWFRRDLRIEDNPALAAAAHEGS-----VFPVFIWCPEEEGQFYPGRASRWW 55
Query: 59 LLQSLEXXXXXXXXXXTCLYVLRGKAVDLLPKLFDDWQVKYLTCQVD---IDPEFVQQDE 115
+ QSL + L ++ K + + + D +V T V DP + +D
Sbjct: 56 MKQSLAHLSQSLKALGSDLTLI--KTHNTISAILDCIRVTGATKVVFNHLYDPVSLVRDH 113
Query: 116 YIEDIAEKKGVFINKRVQHTVYDVHKVLRENNGAVPLT-----YQKFLSL-VKSINVKEP 169
+++ ++G+ + +Y+ ++ E P T ++K L + ++S+ + P
Sbjct: 114 TVKEKLVERGISVQSYNGDLLYEPWEIYCEKGK--PFTSFNSYWKKCLDMSIESVMLPPP 171
Query: 170 IEISNVLSSHCKPIDIQSENYSIPNLKELQIDEETLAPVKYHGGETEALKRLNLYMSKKE 229
+ + ++ E + N E + L + G + A K LN ++ K+
Sbjct: 172 WRLMPITAAAEAIWACSIEELGLEN--EAEKPSNALLTRAWSPGWSNADKLLNEFIEKQ- 228
Query: 230 WVCKFEKPNSSPNSIEPSTTVLSPYISHGCLSAKLFYY--KLKEV-----ENGRQHTLPP 282
+ +S + ST++LSPY+ G +S + + ++K++ +N
Sbjct: 229 ---LIDYAKNSKKVVGNSTSLLSPYLHFGEISVRHVFQCARMKQIIWARDKNSEGEESAD 285
Query: 283 VSLMGQLMWREFYYTAGTGVANFDKMVGNAICIQIPWTKNDAFLKAWAEGKTGYPFVDAI 342
+ L G + Y ++ + + + PW + KAW +G+TGYP VDA
Sbjct: 286 LFLRGIGLREYSRYICFNFPFTHEQSLLSHLRF-FPWDADVDKFKAWRQGRTGYPLVDAG 344
Query: 343 MRQLKQEGWIHHLARHMVACFLTRGDLWISWEEGAKIFEDYLLDYDWSLNAGNWMWLSAS 402
MR+L GW+H+ R +V+ F + L + W+ G K F D LLD D + W ++S S
Sbjct: 345 MRELWATGWMHNRIRVIVSSFAVK-FLLLPWKWGMKYFWDTLLDADLECDILGWQYISGS 403
Query: 403 -AFFYKYFRVYSPVAFGQKTDKEGVYIKKYVPELKKYPRE 441
++ R+ +P G K D EG YI++++PEL + P E
Sbjct: 404 IPDGHELDRLDNPALQGAKYDPEGEYIRQWLPELARLPTE 443
>At1g04400.1 68414.m00430 cryptochrome 2 apoprotein (CRY2) / blue
light photoreceptor (PHH1) 97% identical to photolysase
(PHH1) (SP:Q96524) and cryptochrome 2 apoprotein (CRY2)
(SP:U43397). ESTs gb|W43661 and gb|Z25638 come from this
gene; contains Pfam profiles PF03441: FAD binding domain
of DNA photolyase and PF00875: deoxyribodipyrimidine
photolyase; identical to cDNA Cvi cryptochrome 2 (CRY2)
GI:18026275
Length = 612
Score = 105 bits (252), Expect = 6e-23
Identities = 112/460 (24%), Positives = 202/460 (43%), Gaps = 36/460 (7%)
Query: 1 MSKTPTVIHWFRLDLRIHDNLALRNAINEAENRKHLLRPIYFLDPNIKDKVGINRLR--F 58
M I WFR DLRI DN AL A +E + P++ P + + R +
Sbjct: 1 MKMDKKTIVWFRRDLRIEDNPALAAAAHEGS-----VFPVFIWCPEEEGQFYPGRASRWW 55
Query: 59 LLQSLEXXXXXXXXXXTCLYVLRGKAVDLLPKLFDDWQVKYLTCQVD---IDPEFVQQDE 115
+ QSL + L ++ K + + + D +V T V DP + +D
Sbjct: 56 MKQSLAHLSQSLKALGSDLTLI--KTHNTISAILDCIRVTGATKVVFNHLYDPVSLVRDH 113
Query: 116 YIEDIAEKKGVFINKRVQHTVYDVHKVLRENNGAVPLT-----YQKFLSL-VKSINVKEP 169
+++ ++G+ + +Y+ ++ E P T ++K L + ++S+ + P
Sbjct: 114 TVKEKLVERGISVQSYNGDLLYEPWEIYCEKGK--PFTSFNSYWKKCLDMSIESVMLPPP 171
Query: 170 IEISNVLSSHCKPIDIQSENYSIPNLKELQIDEETLAPVKYHGGETEALKRLNLYMSKKE 229
+ + ++ E + N E + L + G + A K LN ++ K+
Sbjct: 172 WRLMPITAAAEAIWACSIEELGLEN--EAEKPSNALLTRAWSPGWSNADKLLNEFIEKQ- 228
Query: 230 WVCKFEKPNSSPNSIEPSTTVLSPYISHGCLSAKLFYY--KLKEV-----ENGRQHTLPP 282
+ +S + ST++LSPY+ G +S + + ++K++ +N
Sbjct: 229 ---LIDYAKNSKKVVGNSTSLLSPYLHFGEISVRHVFQCARMKQIIWARDKNSEGEESAD 285
Query: 283 VSLMGQLMWREFYYTAGTGVANFDKMVGNAICIQIPWTKNDAFLKAWAEGKTGYPFVDAI 342
+ L G + Y ++ + + + PW + KAW +G+TGYP VDA
Sbjct: 286 LFLRGIGLREYSRYICFNFPFTHEQSLLSHLRF-FPWDADVDKFKAWRQGRTGYPLVDAG 344
Query: 343 MRQLKQEGWIHHLARHMVACFLTRGDLWISWEEGAKIFEDYLLDYDWSLNAGNWMWLSAS 402
MR+L GW+H+ R +V+ F + L + W+ G K F D LLD D + W ++S S
Sbjct: 345 MRELWATGWMHNRIRVIVSSFAVK-FLLLPWKWGMKYFWDTLLDADLECDILGWQYISGS 403
Query: 403 -AFFYKYFRVYSPVAFGQKTDKEGVYIKKYVPELKKYPRE 441
++ R+ +P G K D EG YI++++PEL + P E
Sbjct: 404 IPDGHELDRLDNPALQGAKYDPEGEYIRQWLPELARLPTE 443
>At4g08920.1 68417.m01469 cryptochrome 1 apoprotein (CRY1) /
flavin-type blue-light photoreceptor (HY4) contains Pfam
PF03441: FAD binding domain of DNA photolyase; member of
Pfam PF00875: deoxyribodipyrimidine photolyase
superfamily; 99% identical to Cryptochrome 1 apoprotein
(Blue light photoreceptor) (flavin-type blue-light
photoreceptor) (SP:Q43125) [Arabidopsis thaliana]
Length = 681
Score = 96.7 bits (230), Expect = 3e-20
Identities = 61/204 (29%), Positives = 109/204 (53%), Gaps = 12/204 (5%)
Query: 247 STTVLSPYISHGCLSAKLFYY--KLKEV---ENGRQHTLPPVSL-MGQLMWREF--YYTA 298
+T+ LSP++ G +S + ++ ++K+V G + V+L + + RE+ Y +
Sbjct: 246 TTSFLSPHLHFGEVSVRKVFHLVRIKQVAWANEGNEAGEESVNLFLKSIGLREYSRYISF 305
Query: 299 GTGVANFDKMVGNAICIQIPWTKNDAFLKAWAEGKTGYPFVDAIMRQLKQEGWIHHLARH 358
++ ++G+ PW ++ + KAW +G+TGYP VDA MR+L GW+H R
Sbjct: 306 NHPYSHERPLLGHLKFF--PWAVDENYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRV 363
Query: 359 MVACFLTRGDLWISWEEGAKIFEDYLLDYDWSLNAGNWMWLSASAFFYKYF-RVYSPVAF 417
+V+ F + L + W G K F D LLD D +A W +++ + + F R+ +P
Sbjct: 364 VVSSFFVK-VLQLPWRWGMKYFWDTLLDADLESDALGWQYITGTLPDSREFDRIDNPQFE 422
Query: 418 GQKTDKEGVYIKKYVPELKKYPRE 441
G K D G Y+++++PEL + P +
Sbjct: 423 GYKFDPNGEYVRRWLPELSRLPTD 446
>At2g47590.1 68415.m05938 photolyase/blue light photoreceptor (PHR2)
identical to photolyase/blue light photoreceptor PHR2
[Arabidopsis thaliana] GI:3319288; contains Pfam domain,
PF00875: deoxyribodipyrimidine photolyase
Length = 447
Score = 66.9 bits (156), Expect = 3e-11
Identities = 75/308 (24%), Positives = 134/308 (43%), Gaps = 29/308 (9%)
Query: 10 WFRLDLRIHDNLALRNAINEAENRKHLLRPIYFLDPNIK-------DKVGINRLRFLLQS 62
WFR DLR+HDN L +A +E + + P+Y DP DK G R +FL++S
Sbjct: 120 WFRNDLRVHDNECLNSANDECVS----VLPVYCFDPRDYGKSSSGFDKTGPFRAQFLIES 175
Query: 63 LEXXXXXXXXXXTCLYVLRGKAVDLLPKLFDDWQVKYLTCQVDIDPEFVQQDEYIEDIAE 122
+ + L V GK +L +L + + ++ + V+ + IE +
Sbjct: 176 VSELRKNLQARGSNLVVRVGKPEAVLVELAKEIGADAVYAHREVSHDEVKAEGKIETAMK 235
Query: 123 KKGVFINKRVQHTVYDVHKVLRENNGAVPLTYQKFLSLVKSINVKEPIEISNVLSSHCKP 182
++GV + T+Y + L +P Y F V+ + +++ I + L S
Sbjct: 236 EEGVEVKYFWGSTLYHLDD-LPFKIEDLPSNYGAFKDKVQKLEIRKTIAALDQLKSLPSR 294
Query: 183 IDIQSENYSIPNLKELQIDEETLAPVK----YHGGETEALKRLNLYMSKKEWVCKFEKPN 238
D+ E IP+L +L I + GGETEAL RL + + +
Sbjct: 295 GDV--ELGDIPSLLDLGISPTPRTSQEGKPTMVGGETEALTRLKSFAADCQARLSKGNQK 352
Query: 239 SSPNSIEPS--TTVLSPYISHGCLSAKLFYYKLKEVENGRQHTLPPVS---------LMG 287
NS+ + + +SP+++ G +S + + +LK+ + + P + LM
Sbjct: 353 GGNNSVFGANFSCKISPWLAMGSISPRSMFDELKKTISASTTSTTPRNGPGDTGLNWLMY 412
Query: 288 QLMWREFY 295
+L+WR+F+
Sbjct: 413 ELLWRDFF 420
>At3g60440.1 68416.m06760 expressed protein
Length = 268
Score = 33.1 bits (72), Expect = 0.38
Identities = 21/69 (30%), Positives = 36/69 (52%), Gaps = 1/69 (1%)
Query: 104 VDIDPEFVQQDEYIED-IAEKKGVFINKRVQHTVYDVHKVLRENNGAVPLTYQKFLSLVK 162
+ I PE +D + I+E + +F + V H+V V+K + + V +FLSL+K
Sbjct: 126 IAIKPEIAPKDGKFDFMISELEAIFPDGMVDHSVDPVYKEMPQWEETVEGCTDRFLSLIK 185
Query: 163 SINVKEPIE 171
++ K P E
Sbjct: 186 TLADKYPSE 194
>At1g12370.2 68414.m01430 type II CPD photolyase PHR1 (PHR1) nearly
identical to type II CPD photolyase PHR1 [Arabidopsis
thaliana] GI:2984707; similar to class II DNA photolyase
(GI:5081541) [Chlamydomonas reinhardtii]; supporting
cDNA gi|2984706|gb|AF053365.1|AF053365
Length = 496
Score = 32.7 bits (71), Expect = 0.50
Identities = 21/94 (22%), Positives = 40/94 (42%), Gaps = 1/94 (1%)
Query: 7 VIHWFRLDLRIHDNLALRNAINEAENRKHLLRPIYFLDPNIKDKVGINRLRFLLQSLEXX 66
V++W D R+ DN AL +A++ A + ++ L D +L F+L+ L
Sbjct: 30 VVYWMFRDQRLKDNWALIHAVDLANRTNAPVAVVFNLFDQFLD-AKARQLGFMLKGLRQL 88
Query: 67 XXXXXXXXTCLYVLRGKAVDLLPKLFDDWQVKYL 100
++L+G A + +P + +L
Sbjct: 89 HHQIDSLQIPFFLLQGDAKETIPNFLTECGASHL 122
>At1g12370.1 68414.m01429 type II CPD photolyase PHR1 (PHR1) nearly
identical to type II CPD photolyase PHR1 [Arabidopsis
thaliana] GI:2984707; similar to class II DNA photolyase
(GI:5081541) [Chlamydomonas reinhardtii]; supporting
cDNA gi|2984706|gb|AF053365.1|AF053365
Length = 490
Score = 32.7 bits (71), Expect = 0.50
Identities = 21/94 (22%), Positives = 40/94 (42%), Gaps = 1/94 (1%)
Query: 7 VIHWFRLDLRIHDNLALRNAINEAENRKHLLRPIYFLDPNIKDKVGINRLRFLLQSLEXX 66
V++W D R+ DN AL +A++ A + ++ L D +L F+L+ L
Sbjct: 30 VVYWMFRDQRLKDNWALIHAVDLANRTNAPVAVVFNLFDQFLD-AKARQLGFMLKGLRQL 88
Query: 67 XXXXXXXXTCLYVLRGKAVDLLPKLFDDWQVKYL 100
++L+G A + +P + +L
Sbjct: 89 HHQIDSLQIPFFLLQGDAKETIPNFLTECGASHL 122
>At4g25290.1 68417.m03637 deoxyribodipyrimidine photolyase family
protein / DNA photolyase family protein contains Pfam
domain, PF00875: deoxyribodipyrimidine photolyase
Length = 581
Score = 32.3 bits (70), Expect = 0.66
Identities = 21/102 (20%), Positives = 46/102 (45%), Gaps = 5/102 (4%)
Query: 6 TVIHWFRLDLRIHDNLALRNAINEAENRKHLLRPIYFLDPNIKDKVGINRLRFLLQSLEX 65
T + WF+ DLR+ D+ L A ++ + P+Y LD I + + L + +LE
Sbjct: 36 TAVVWFKHDLRVDDHPGLL-----AASKHRAVIPLYVLDRRILSRYTTDTLELAIIALED 90
Query: 66 XXXXXXXXXTCLYVLRGKAVDLLPKLFDDWQVKYLTCQVDID 107
+ L + G A +++ L + + ++ + +++
Sbjct: 91 LRKTLKKQGSNLMLRYGNAENVIEDLVKEVRAPFVFVEEEVE 132
>At1g15700.1 68414.m01884 ATP synthase gamma chain 2, chloroplast
(ATPC2) identical to SP|Q01909 ATP synthase gamma chain
2, chloroplast precursor (EC 3.6.3.14) {Arabidopsis
thaliana}; contains Pfam profile: PF00231 ATP synthase;
similar to ATP synthase gamma-subunit GI:21241 from
[Spinacia oleracea]
Length = 386
Score = 29.9 bits (64), Expect = 3.5
Identities = 22/57 (38%), Positives = 30/57 (52%), Gaps = 3/57 (5%)
Query: 110 FVQQDEY-IEDIAEKKGVF-INKRVQHTVYDVHKV-LRENNGAVPLTYQKFLSLVKS 163
F ++DE+ ++ E GVF K Q DV + + E V L Y KF+SLVKS
Sbjct: 187 FSRRDEFDVDKCIEGGGVFPTTKEAQVIADDVFSLFVSEEVDKVELVYTKFVSLVKS 243
Database: arabidopsis
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.321 0.138 0.431
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,230,850
Number of Sequences: 28952
Number of extensions: 494616
Number of successful extensions: 1070
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 1043
Number of HSP's gapped (non-prelim): 14
length of query: 441
length of database: 12,070,560
effective HSP length: 83
effective length of query: 358
effective length of database: 9,667,544
effective search space: 3460980752
effective search space used: 3460980752
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 61 (28.7 bits)
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