Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000220-TA|BGIBMGA000220-PA|IPR003439|ABC transporter
related, IPR013525|ABC-2 type transporter
(823 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_24754| Best HMM Match : ABC_tran (HMM E-Value=1.3e-36) 112 9e-25
SB_17270| Best HMM Match : ABC_tran (HMM E-Value=5.1e-08) 94 4e-19
SB_26155| Best HMM Match : No HMM Matches (HMM E-Value=.) 92 1e-18
SB_12613| Best HMM Match : No HMM Matches (HMM E-Value=.) 87 7e-17
SB_40434| Best HMM Match : ABC2_membrane (HMM E-Value=0.0087) 59 2e-08
SB_59776| Best HMM Match : ABC_tran (HMM E-Value=0.00016) 57 7e-08
SB_53189| Best HMM Match : ABC_tran (HMM E-Value=0.021) 54 4e-07
SB_37511| Best HMM Match : ABC_tran (HMM E-Value=0) 52 2e-06
SB_58705| Best HMM Match : ABC_tran (HMM E-Value=5.7e-05) 50 8e-06
SB_15716| Best HMM Match : ABC_tran (HMM E-Value=0) 48 2e-05
SB_37973| Best HMM Match : ABC_tran (HMM E-Value=0) 45 3e-04
SB_16306| Best HMM Match : No HMM Matches (HMM E-Value=.) 45 3e-04
SB_26620| Best HMM Match : No HMM Matches (HMM E-Value=.) 44 7e-04
SB_25408| Best HMM Match : ABC_tran (HMM E-Value=0) 42 0.002
SB_27355| Best HMM Match : ABC_tran (HMM E-Value=1.1e-37) 41 0.005
SB_5904| Best HMM Match : No HMM Matches (HMM E-Value=.) 40 0.008
SB_44672| Best HMM Match : ABC_tran (HMM E-Value=4.2039e-44) 39 0.014
SB_36627| Best HMM Match : ABC_tran (HMM E-Value=5.4e-06) 36 0.100
SB_34083| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.93
SB_18968| Best HMM Match : HMG_box (HMM E-Value=1.2e-19) 33 0.93
SB_30636| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 1.6
SB_47925| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 2.8
SB_37300| Best HMM Match : MMR_HSR1 (HMM E-Value=0.061) 31 3.8
SB_7838| Best HMM Match : Filamin (HMM E-Value=1.1e-22) 31 3.8
SB_36048| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 5.0
SB_24362| Best HMM Match : NOGCT (HMM E-Value=3.2) 31 5.0
SB_13913| Best HMM Match : WH2 (HMM E-Value=8.8e-05) 31 5.0
SB_30501| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 5.0
SB_30413| Best HMM Match : WSC (HMM E-Value=2.4) 30 6.6
SB_538| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 6.6
SB_8818| Best HMM Match : I-set (HMM E-Value=0) 30 6.6
SB_31867| Best HMM Match : ABC_tran (HMM E-Value=1.3e-36) 30 8.7
SB_56263| Best HMM Match : G-alpha (HMM E-Value=3.6) 30 8.7
SB_20992| Best HMM Match : ABC_tran (HMM E-Value=1.3e-36) 30 8.7
>SB_24754| Best HMM Match : ABC_tran (HMM E-Value=1.3e-36)
Length = 781
Score = 112 bits (270), Expect = 9e-25
Identities = 74/257 (28%), Positives = 135/257 (52%), Gaps = 15/257 (5%)
Query: 206 SLEITSPENKSTLVVSGLSFEVKCGEILAVLATAQHEATGLLDVLAGVRK--KLSGDIVI 263
+L++ S K+ L+ G++ ++K GE+ AV+ + T L+ L+G G+I I
Sbjct: 201 NLKLNSGTKKTVLM--GVTGKIKSGEVTAVMGPSGAGKTTFLNTLSGKAYYGTRGGEIFI 258
Query: 264 NGQPVASSTL-RKVVAYVRNDTALCPTMSVEHTLRFHAALRKPRNTHSHVKMGDRDRINL 322
NG+ + R + +V + + ++V+ LR+ A LR +K +RI+
Sbjct: 259 NGKKEDDLDMYRTITGFVPQEDVMHRNLTVKEVLRYQAELRLSSIVKKAMK---EERIHQ 315
Query: 323 LIEELGLEQVRDTNVGRLTRSEI-----RRLNVACQLLLDMAILILDQPTKEMDIFDTFF 377
+IE L LE+++D+ +G T I +R+N+ +L++D +L LD+PT +D +
Sbjct: 316 IIELLELERIQDSQIGDETNRGISGGQRKRVNIGMELVVDPTLLFLDEPTSGLDSTSSLS 375
Query: 378 LVEYLRNWASTGRVVIMS-LHPPTYEIFAMLTKVVLIS-AGRTMFSGYRRDMLPYFSSID 435
++ LR A GR+ I+ +H P +EIF M ++ + GRT+F G YF +
Sbjct: 376 VLNALRAVAERGRLTIVCVIHQPRFEIFRMFHNLLFLGPGGRTVFQGSVDKAEEYFQRLG 435
Query: 436 YPCPAFKNPSDYYLDLV 452
+ P NP+D+Y+D++
Sbjct: 436 FEKPLNVNPADFYMDVI 452
>SB_17270| Best HMM Match : ABC_tran (HMM E-Value=5.1e-08)
Length = 771
Score = 94.3 bits (224), Expect = 4e-19
Identities = 52/170 (30%), Positives = 96/170 (56%), Gaps = 10/170 (5%)
Query: 290 MSVEHTLRFHAALRKPRNTHSHVKMGDRDRINLLIEELGLEQVRDTNVGR-----LTRSE 344
++V+ LR+ A LR +T S K +R+ +IE L LE+++D+ +G ++ +
Sbjct: 260 LTVKEVLRYQAELRLSSSTKSSKK---HERVQQIIELLQLERIQDSQIGDEENRGISGGQ 316
Query: 345 IRRLNVACQLLLDMAILILDQPTKEMDIFDTFFLVEYLRNWASTGRVVIMS-LHPPTYEI 403
+R+N+ +L++D +L LD+PT +D + ++ LR A GR+ I+ +H P +EI
Sbjct: 317 RKRVNIGMELVVDPTLLFLDEPTSGLDSTSSLSVLNALRAVAEKGRLTIVCVIHQPRFEI 376
Query: 404 FAMLTKVVLIS-AGRTMFSGYRRDMLPYFSSIDYPCPAFKNPSDYYLDLV 452
F M ++ + GRT+F G + YF + + P NP+D+Y+D++
Sbjct: 377 FRMFHNLLFLGPGGRTVFQGSVDEAEEYFQCLGFEKPLNVNPADFYMDVI 426
>SB_26155| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 815
Score = 92.3 bits (219), Expect = 1e-18
Identities = 53/193 (27%), Positives = 101/193 (52%), Gaps = 6/193 (3%)
Query: 219 VVSGLSFEVKCGEILAVLATAQHEATGLLDVLAGVRKKLS-GDIVINGQPVASSTLRKVV 277
++ +S + K GE++ VL + + L++VLAG R K + G I +NG RK+
Sbjct: 141 IIKDVSGKFKSGELVGVLGPSGAGKSTLINVLAGYRTKFADGSIKVNGVERNLRQFRKMS 200
Query: 278 AYVRNDTALCPTMSVEHTLRFHAALRKPRNTHSHVKMGDRDR-INLLIEELGLEQVRDTN 336
Y+ D L P ++V ++ A L N + + D++R I ++ LGL + DT
Sbjct: 201 CYIMQDDVLLPHLTVMESMMVSANLHLKEN----MPLDDKERLIKEILINLGLLETADTR 256
Query: 337 VGRLTRSEIRRLNVACQLLLDMAILILDQPTKEMDIFDTFFLVEYLRNWASTGRVVIMSL 396
+ ++ + +R+ +A +L+ + ++ LD+PT +D + + +R A GR V+ ++
Sbjct: 257 LSEVSGGQRKRVAIALELINNPPLIFLDEPTSGLDSSSAYQCISLMRTLAHGGRTVVCTI 316
Query: 397 HPPTYEIFAMLTK 409
H P+ ++F M K
Sbjct: 317 HQPSAKLFEMFDK 329
Score = 30.7 bits (66), Expect = 5.0
Identities = 35/150 (23%), Positives = 61/150 (40%), Gaps = 9/150 (6%)
Query: 561 VMCLSAWPVLLWLGAREASSMRKHVERDIAVGLYSRTVFILYDQFIEVLSAILTWLAYLV 620
+M S P +L + +R+H+ YS + L +V IL L Y
Sbjct: 596 LMFTSLMPTVLTFPMEKLVFIREHLNN-----WYSLKSYYLAKTMADVPFQILFPLIYCT 650
Query: 621 PSYAMSGLYAPTPGAFDAFYIYLGCMVLFFINIQMVCRATIFLVPMEKTASVIAGVCLLL 680
Y M+ P G + ++ +L + Q + + P TA +A V +
Sbjct: 651 IVYFMTE--QPHEGL--RYTQFVAITILTCLVAQSIGLLIGTVAPSLPTAVYVAPVTGIP 706
Query: 681 GTLVNGVMIQQADLPYYVKWLQYVSPSRWT 710
L +G + +P Y++WL YVS +R++
Sbjct: 707 VLLFSGFFVNFDTIPNYMQWLTYVSYARYS 736
Score = 30.3 bits (65), Expect = 6.6
Identities = 10/36 (27%), Positives = 20/36 (55%)
Query: 416 GRTMFSGYRRDMLPYFSSIDYPCPAFKNPSDYYLDL 451
G +F G ++P+ S CP + NP+D+ +++
Sbjct: 421 GNCLFQGPVAQLVPHMSREGLECPKYHNPADFIIEV 456
>SB_12613| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 651
Score = 86.6 bits (205), Expect = 7e-17
Identities = 65/247 (26%), Positives = 120/247 (48%), Gaps = 15/247 (6%)
Query: 211 SPENKSTLVVSGLSFEVKCGEILAVLATAQHEATGLLDVLAG---VRKKLSGDIVINGQP 267
+P +++ ++ VK G +LA++ + + L++VLA ++SG +++N +
Sbjct: 201 APNGNIKHILNDVNGTVKPGSLLAIMGASGAGKSTLMNVLAHRNIADMQVSGTVMVNERK 260
Query: 268 VASSTLRKVVAYVRNDTALCPTMSVEHTLRFHAALRKPRNTHSHVKMGDRDRINLLIEEL 327
V + + AYV+ + ++V L F A LR ++ ++ R++ +I E+
Sbjct: 261 VGLD-INTISAYVQQEDLFIGKLTVREHLVFQALLRLDKDLSLQERLY---RVDQIIGEV 316
Query: 328 GLEQVRDTNVG------RLTRSEIRRLNVACQLLLDMAILILDQPTKEMDIFDTFFLVEY 381
GL + DT +G ++ E +RL+ A ++L D AIL D+PT +D F ++
Sbjct: 317 GLRRCADTMIGIPGRMRGISGGEKKRLSFASEVLTDPAILFADEPTSGLDAFMAQTVITT 376
Query: 382 LRNWASTGRVVIMSLHPPTYEIFAMLTKVVLISAGRTMFSGYRRDMLPYFS-SIDYPCPA 440
L+ A+ GR V+ ++H P+ E+FAM + + DM PY + S D P
Sbjct: 377 LQKMAAQGRTVVCTIHQPSSEVFAMFDRWDSFREDPDVIRSSPNDM-PYITVSNDMPYIT 435
Query: 441 FKNPSDY 447
N Y
Sbjct: 436 VSNDMPY 442
>SB_40434| Best HMM Match : ABC2_membrane (HMM E-Value=0.0087)
Length = 405
Score = 58.8 bits (136), Expect = 2e-08
Identities = 29/85 (34%), Positives = 52/85 (61%), Gaps = 2/85 (2%)
Query: 370 MDIFDTFFLVEYLRNWASTGRV-VIMSLHPPTYEIFAMLTKVVLIS-AGRTMFSGYRRDM 427
+D + +++ LR A G++ VI +H P +EIF + KV+ + GRT+F G +
Sbjct: 3 LDSTSSLLVLDALRAVAEKGKLTVICVIHQPRFEIFDRMHKVLFLGPGGRTVFQGTVDES 62
Query: 428 LPYFSSIDYPCPAFKNPSDYYLDLV 452
+ YFSS++ PA NP+D+++D++
Sbjct: 63 MAYFSSLNLRMPANVNPADFFMDVI 87
>SB_59776| Best HMM Match : ABC_tran (HMM E-Value=0.00016)
Length = 113
Score = 56.8 bits (131), Expect = 7e-08
Identities = 36/116 (31%), Positives = 63/116 (54%), Gaps = 9/116 (7%)
Query: 300 AALRKPRNTHSHVKMGDRDRINLLIEELGLEQVRDTNVGR------LTRSEIRRLNVACQ 353
A LRK R+ +M ++ +I ELGL + DT +G ++ E +RL+ A +
Sbjct: 1 ALLRKDRHVPDKERML---KVEEVITELGLLKCADTVIGTPGRVRGISGGEQKRLSFASE 57
Query: 354 LLLDMAILILDQPTKEMDIFDTFFLVEYLRNWASTGRVVIMSLHPPTYEIFAMLTK 409
+L +IL D+PT +D F +V L+ A+ GR +I ++H P+ E++ M ++
Sbjct: 58 ILTGPSILFADEPTSGLDSFMAQSVVATLQKLAAQGRTIICTIHQPSSEVYNMFSR 113
>SB_53189| Best HMM Match : ABC_tran (HMM E-Value=0.021)
Length = 127
Score = 54.4 bits (125), Expect = 4e-07
Identities = 35/123 (28%), Positives = 64/123 (52%), Gaps = 6/123 (4%)
Query: 219 VVSGLSFEVKCGEILAVLATAQHEATGLLDVLAG--VRKKLSGDIVINGQPVAS-STLRK 275
V++G++ ++ GE+ AV+ + T L+ L+G GDI ING + R
Sbjct: 6 VLAGVTGKINSGEVTAVMGPSGAGKTTFLNTLSGKAYYGNRGGDIFINGVKESDFDKYRT 65
Query: 276 VVAYVRNDTALCPTMSVEHTLRFHAALRKPRNTHSHVKMGDRDRINLLIEELGLEQVRDT 335
+ +V + + ++V+ LR+ A LR +T S K +R+ +IE L LE+++D+
Sbjct: 66 ITGFVPQEDVMHRNLTVKEVLRYQAELRLSSSTKSSKK---HERVQQIIELLQLERIQDS 122
Query: 336 NVG 338
+G
Sbjct: 123 QIG 125
>SB_37511| Best HMM Match : ABC_tran (HMM E-Value=0)
Length = 884
Score = 52.0 bits (119), Expect = 2e-06
Identities = 36/154 (23%), Positives = 77/154 (50%), Gaps = 10/154 (6%)
Query: 222 GLSFEVKCGEILAVLATAQHEATGLLDVLAGVRKKLSGDIVINGQPVAS----STLRKVV 277
G+S ++ G+I A+L + L+ L G+ + SG +I G+ ++ + LR+ +
Sbjct: 514 GISMDIYEGQITALLGHNGAGKSTLIGALTGMIQPSSGTALIYGKDISRFGDLAELRRNI 573
Query: 278 AYVRNDTALCPTMSVEHTLRFHAALRKPRNTHSHVKMGDRDRINLLIEELGLEQVRDTNV 337
+ ++V+ L F+ L+ ++ + + + +++E+GL++ +D
Sbjct: 574 GVCPQQDVIFEFLTVKEHLEFYFKLKTGGDSQQN------NGADAILKEIGLQEKKDDIA 627
Query: 338 GRLTRSEIRRLNVACQLLLDMAILILDQPTKEMD 371
L+ + R+L+V L+ D +L LD+PT MD
Sbjct: 628 KNLSGGQKRKLSVGISLVGDPKVLFLDEPTSGMD 661
>SB_58705| Best HMM Match : ABC_tran (HMM E-Value=5.7e-05)
Length = 284
Score = 50.0 bits (114), Expect = 8e-06
Identities = 40/154 (25%), Positives = 76/154 (49%), Gaps = 13/154 (8%)
Query: 211 SPENKSTLVVSGLSFEVKCGEILAVLATAQHEATGLLDVLAGVRK---KLSGDIVINGQP 267
+P + V+ +S + G +LAV+ + + L++VLA +++G++ +N
Sbjct: 124 APAPQIRQVLFDVSGRAEPGTLLAVMGASGAGKSTLMNVLAYRNLGSIQVTGEVKVNNNN 183
Query: 268 VASSTLRKVVAYVRNDTALCPTMSVEHTLRFHAALRKPRNTHSHVKMGDRDRINLLIEEL 327
+ + + + AY++ + T++V L FHA LR + H K DR+ I EL
Sbjct: 184 LGLA-INSISAYIQQEDLFIGTLTVREHLTFHALLRMDK---KHSKQERLDRVEEAINEL 239
Query: 328 GLEQVRDTNVGR------LTRSEIRRLNVACQLL 355
GL + DT +G ++ E +RL+ A ++L
Sbjct: 240 GLLKCADTVIGTPGRVRGISAGEKKRLSFASEVL 273
>SB_15716| Best HMM Match : ABC_tran (HMM E-Value=0)
Length = 1702
Score = 48.4 bits (110), Expect = 2e-05
Identities = 46/177 (25%), Positives = 78/177 (44%), Gaps = 11/177 (6%)
Query: 244 TGLLDVLAGVRKKLSGDIVINGQPVASST--LRKVVAYVRNDTALCPTMSVEHTLRFHAA 301
T +L G SG+ ++G + S + + Y AL ++ + LR +A
Sbjct: 1400 TTTFKMLTGDIPVTSGEGFVDGHSILSDINGAHQSMGYCPQFDALDDLLTAKDHLRLYAR 1459
Query: 302 LRK-PRNTHSHVKMGDRDRINLLIEELGLEQVRDTNVGRLTRSEIRRLNVACQLLLDMAI 360
LR P V +N LI+ + L Q +D G+ + R+L+ A L+ + AI
Sbjct: 1460 LRGVPERYIPKV-------VNSLIQRMNLVQYQDVCAGKYSGGNKRKLSTAIALVGNPAI 1512
Query: 361 LILDQPTKEMDIFDTFFLVEYLRNWASTGRVVIMSLHPPTYEIFAMLTKVVLISAGR 417
+ +D+PT MD FL + GR VI++ H E A+ +V ++ G+
Sbjct: 1513 VFMDEPTTGMDPKARRFLWNIITGIMKEGRTVILTSH-SMEECEALCNRVAIMVNGQ 1568
Score = 36.7 bits (81), Expect = 0.076
Identities = 28/123 (22%), Positives = 56/123 (45%), Gaps = 2/123 (1%)
Query: 324 IEELGLEQVRDTNVGRLTRSEIRRLNVACQLLLDMAILILDQPTKEMDIFDTFFLVEYLR 383
++++GL R L+ R+L+VA + + ++ILD+PT +D + + + L
Sbjct: 427 LKDVGLTNKRHELSANLSGGMKRKLSVAMAFVAESRVVILDEPTAGVDPYARRSIWDLLL 486
Query: 384 NWASTGRVVIMSLHPPTYEIFAMLTKVVLISAGRTMFSGYRRDMLPYFSSIDYPCPAFKN 443
+ R V++S H E + ++ +IS G+ G + ++ + Y K
Sbjct: 487 KY-KKDRTVLLSTHHMD-EADVLGDRIAIISQGKLQCCGTSLFLKSHYGNGYYLTLTKKT 544
Query: 444 PSD 446
P D
Sbjct: 545 PGD 547
>SB_37973| Best HMM Match : ABC_tran (HMM E-Value=0)
Length = 3369
Score = 44.8 bits (101), Expect = 3e-04
Identities = 43/184 (23%), Positives = 75/184 (40%), Gaps = 9/184 (4%)
Query: 216 STLVVSGLSFEVKCGEILAVLATAQHEATGLLDVLAGVRKKLSGDIVINGQPVASST--L 273
S + V LS + G+I A+L T + +L G+ SG +I+ + + + +
Sbjct: 213 SKVAVDNLSLNMYKGQITALLGHNGAGKTTTMSILTGLFTPTSGSAMIDNKSILTDIDGI 272
Query: 274 RKVVAYVRNDTALCPTMSVEHTLRFHAALRKPRNTHSHVKMGDRDRINLLIEELGLEQVR 333
R+ + L ++VE L F L+ +D + +I +L L R
Sbjct: 273 RESLGLCPQHNVLFDRLTVEEHLEFFINLK------GKYGQAAKDEVLQMITDLQLLDKR 326
Query: 334 DTNVGRLTRSEIRRLNVACQLLLDMAILILDQPTKEMDIFDTFFLVEYLRNWASTGRVVI 393
L+ R+LN A L+ + LD+PT MD + + L G+ VI
Sbjct: 327 KAKSSELSGGMKRKLNCAIALVGGSETVFLDEPTSGMDPYARRATWDLLLK-HKAGKTVI 385
Query: 394 MSLH 397
++ H
Sbjct: 386 LTTH 389
>SB_16306| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 958
Score = 44.8 bits (101), Expect = 3e-04
Identities = 24/78 (30%), Positives = 48/78 (61%), Gaps = 1/78 (1%)
Query: 219 VVSGLSFEVKCGEILAVLATAQHEATGLLDVLAGVRKKLSGDIVINGQPVASSTLRKVVA 278
++ ++ +V+ GE+LA++ + T LL+VLAG K +GD++ING+ + + L+K +
Sbjct: 24 ILKTINGKVRPGEMLALMGPSGSGKTTLLNVLAGRMAKDAGDVLINGKHM-NKKLKKRIG 82
Query: 279 YVRNDTALCPTMSVEHTL 296
YV + ++++ TL
Sbjct: 83 YVMQEDIFFSHLTLKETL 100
>SB_26620| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 433
Score = 43.6 bits (98), Expect = 7e-04
Identities = 31/111 (27%), Positives = 55/111 (49%), Gaps = 5/111 (4%)
Query: 206 SLEITSPENKSTLVVSGLSFEVKCGEILAVLATAQHEATGLLDVLAG--VRKKLSGDIVI 263
+L++ S K+ L+ G++ ++K GE+ AV+ + T L+ L+G GDI I
Sbjct: 319 NLKLNSGTKKTVLM--GVTGKIKSGEVTAVMGPSGAGKTTFLNTLSGKAYYGNRGGDIFI 376
Query: 264 NGQPVAS-STLRKVVAYVRNDTALCPTMSVEHTLRFHAALRKPRNTHSHVK 313
NG + R + +V + + ++V+ LR+ A LR +T S K
Sbjct: 377 NGVKESDFDKYRTITGFVPQEDVMHRNLTVKEVLRYQAELRLSSSTKSSKK 427
>SB_25408| Best HMM Match : ABC_tran (HMM E-Value=0)
Length = 1636
Score = 41.9 bits (94), Expect = 0.002
Identities = 27/95 (28%), Positives = 45/95 (47%), Gaps = 5/95 (5%)
Query: 198 IYPNYYVNSLEITSPENKSTLVVSGLSFEVKCGEILAVLATAQHEATGLLDVLAGVRKKL 257
++ +NSL+ EN + V G+S + G+I A+L T L+ +L G+
Sbjct: 303 LHAGVVINSLKKVFSENGKKVAVDGVSLNMYEGQITALLGHNGAGKTTLMSMLTGLFPPT 362
Query: 258 SGDIVINGQPVASSTLRKVVAYVRNDTALCPTMSV 292
SG+ V+NG + ++ VR+ LCP V
Sbjct: 363 SGNAVVNGCSITDD-----ISGVRSSLDLCPQHDV 392
Score = 35.5 bits (78), Expect = 0.17
Identities = 22/72 (30%), Positives = 38/72 (52%), Gaps = 1/72 (1%)
Query: 346 RRLNVACQLLLDMAILILDQPTKEMDIFDTFFLVEYLRNWASTGRVVIMSLHPPTYEIFA 405
R+L+ A L+ D ++ LD+PT MD L + L + GR +I++ H E A
Sbjct: 1458 RKLSTAIALVGDPPVVFLDEPTTGMDPVARRLLWDALSRVRAEGRCIIITSH-SMEECDA 1516
Query: 406 MLTKVVLISAGR 417
+ T++ ++ GR
Sbjct: 1517 LCTRLAIMVNGR 1528
>SB_27355| Best HMM Match : ABC_tran (HMM E-Value=1.1e-37)
Length = 226
Score = 40.7 bits (91), Expect = 0.005
Identities = 28/99 (28%), Positives = 48/99 (48%), Gaps = 2/99 (2%)
Query: 320 INLLIEELGLEQVRDTNVGRLTRSEIRRLNVACQLLLDMAILILDQPTKEMDIFDTFFLV 379
I+L+I LGL + R+ N L+ R +A LL IL++D+P +DI ++
Sbjct: 84 IDLIITRLGLRKFRNHNWSGLSSGYKMRFELARMLLRKPKILLIDEPLANLDILAQQTVL 143
Query: 380 EYLRNWAST--GRVVIMSLHPPTYEIFAMLTKVVLISAG 416
+ RN A++ + I+ YE+ +VV + G
Sbjct: 144 DDFRNIANSPFRPIAIVLSSQQLYEVEKTSNQVVFLKQG 182
>SB_5904| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 367
Score = 39.9 bits (89), Expect = 0.008
Identities = 17/45 (37%), Positives = 30/45 (66%), Gaps = 1/45 (2%)
Query: 409 KVVLIS-AGRTMFSGYRRDMLPYFSSIDYPCPAFKNPSDYYLDLV 452
KV+ + GRT+F G + + YFSS++ PA NP+D+++D++
Sbjct: 5 KVLFLGPGGRTVFQGTVDESMAYFSSLNLRMPANVNPADFFMDVI 49
>SB_44672| Best HMM Match : ABC_tran (HMM E-Value=4.2039e-44)
Length = 945
Score = 39.1 bits (87), Expect = 0.014
Identities = 26/95 (27%), Positives = 50/95 (52%), Gaps = 2/95 (2%)
Query: 323 LIEELGLEQVRDTNVGRLTRSEIRRLNVACQLLLDMAILILDQPTKEMDIFDTFFLVEYL 382
L+E++GL R+ V L+ R+L+VA + +ILD+PT +D + + + L
Sbjct: 590 LVEDIGLPNKRNCAVETLSGGMKRKLSVAMAFVAGSRTVILDEPTAGVDPYARRAIWDLL 649
Query: 383 RNWASTGRVVIMSLHPPTYEIFAMLTKVVLISAGR 417
+ GR +++S H E + ++ +IS+G+
Sbjct: 650 IKY-KKGRTILLSTH-FMEEADILGDRIAIISSGK 682
>SB_36627| Best HMM Match : ABC_tran (HMM E-Value=5.4e-06)
Length = 240
Score = 36.3 bits (80), Expect = 0.100
Identities = 24/82 (29%), Positives = 37/82 (45%), Gaps = 4/82 (4%)
Query: 219 VVSGLSFEVKCGEILAVLATAQHEATGLLDVLAGVRKKLSGDIVINGQPVAS----STLR 274
++ GLSF+VK GE+ +L T LL L G+ G + GQP+ +
Sbjct: 98 ILRGLSFDVKVGEVTCLLGRNGVGKTTLLKCLMGLIPAKEGAVQWEGQPITGFKPHQRVH 157
Query: 275 KVVAYVRNDTALCPTMSVEHTL 296
+AYV + ++VE L
Sbjct: 158 AGIAYVPQGREIFGRLTVEENL 179
>SB_34083| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 580
Score = 33.1 bits (72), Expect = 0.93
Identities = 18/63 (28%), Positives = 33/63 (52%), Gaps = 1/63 (1%)
Query: 204 VNSLEITSPENKSTL-VVSGLSFEVKCGEILAVLATAQHEATGLLDVLAGVRKKLSGDIV 262
V +L E KST+ ++SGL+ ++ G+++ V+ + LL L KL+G +
Sbjct: 63 VENLPEIETEVKSTVGLLSGLNLSIRKGQLIGVIGGVGSGKSSLLSALTAEMDKLTGQVF 122
Query: 263 ING 265
+ G
Sbjct: 123 VAG 125
>SB_18968| Best HMM Match : HMG_box (HMM E-Value=1.2e-19)
Length = 1204
Score = 33.1 bits (72), Expect = 0.93
Identities = 38/135 (28%), Positives = 59/135 (43%), Gaps = 8/135 (5%)
Query: 151 HHSYLLPSSHL---GGR-MSKAGSHMSVAHSRKHSTLRPGDQLDGYAHSAYIYPNYYVNS 206
+HS L SS + GG+ M K S M + +S K Q ++++ N S
Sbjct: 538 YHSVPLQSSVMPVSGGKPMQKLKSTMQIKNSNKKPAQTKTSQSKA-SNASQKNNNVQSTS 596
Query: 207 LEITSPENKSTLVVSGLSFEVKCGEILAVLATAQHEATGLLDVLAGVRKKLSGDIVINGQ 266
+ T+ +N ++ V + S G A TA +L L V +G V GQ
Sbjct: 597 CQSTTAQNNTSTVQATPSSSTLKGSTQAHQTTANVLTQAML--LKAVSSTAAGQAVSTGQ 654
Query: 267 PVASSTLR-KVVAYV 280
PV+ +T + KV+ YV
Sbjct: 655 PVSVATSQGKVIYYV 669
>SB_30636| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 285
Score = 32.3 bits (70), Expect = 1.6
Identities = 33/161 (20%), Positives = 65/161 (40%), Gaps = 10/161 (6%)
Query: 216 STLVVSGLSFEVKCGEILAVLATAQHEATGLLDVLAGVRKKLSGDIVING-----QPVAS 270
S V+ G+S +V GE++ ++ + + LL + + + G I + G V
Sbjct: 33 SNEVLKGISLDVAPGEVVCLIGPSGSGKSTLLRCVNLLEQPNEGTIHVGGFEATDPDVDI 92
Query: 271 STLRKVVAYVRNDTALCPTMSVEHTLRFHAALRKPRNTHSHVKMGDRDRINLLIEELGLE 330
+R+ V V L P ++V L P K +E + +
Sbjct: 93 DKMRRKVGMVFQQFNLFPHLTVLENLTI-----GPIRVRKMGKAAAEALARNYLERVHIP 147
Query: 331 QVRDTNVGRLTRSEIRRLNVACQLLLDMAILILDQPTKEMD 371
+ D +L+ + +R+ +A L +D ++ D+PT +D
Sbjct: 148 EQADKYPSQLSGGQQQRVAIARALCMDPIAMLFDEPTSALD 188
>SB_47925| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 304
Score = 31.5 bits (68), Expect = 2.8
Identities = 14/34 (41%), Positives = 19/34 (55%), Gaps = 6/34 (17%)
Query: 728 ISKDLRCTNKQRPYPDIIVQSPCPPPNGTQVLSN 761
+ K CTN+ SPCPPPN T+V+S+
Sbjct: 269 VRKTFLCTNRTNQ------SSPCPPPNATEVMSS 296
>SB_37300| Best HMM Match : MMR_HSR1 (HMM E-Value=0.061)
Length = 152
Score = 31.1 bits (67), Expect = 3.8
Identities = 22/84 (26%), Positives = 42/84 (50%), Gaps = 4/84 (4%)
Query: 224 SFEVKCGEILAVLATAQHEATGLLDVLAGVR---KKLSGDIVINGQPVASSTLRKVVAYV 280
S +V GE++AV+ + T L++VLA +SG + N + + + + + AY+
Sbjct: 42 SGKVNPGELVAVMGASGSGKTTLINVLAHRNIGSMHVSGVVKANNKTLGLA-INSISAYI 100
Query: 281 RNDTALCPTMSVEHTLRFHAALRK 304
+ + T++V L+F L K
Sbjct: 101 QQEDLFIGTLTVREHLKFQLGLVK 124
>SB_7838| Best HMM Match : Filamin (HMM E-Value=1.1e-22)
Length = 820
Score = 31.1 bits (67), Expect = 3.8
Identities = 29/114 (25%), Positives = 42/114 (36%), Gaps = 4/114 (3%)
Query: 15 PNHNGSQRSGTPKPKTSIGSGMKPVQRIHRQSRGVRETSSGYDSSDNETTANYNKYSRKY 74
P H + RS P S +R T++G S N+ + +
Sbjct: 119 PTHGSTLRSPNAGPMRSPNDAPNDAPNGPTHGSTLRSTNAGPMRSPNDAPNDAPTHGSTL 178
Query: 75 RSDPDFRMQNLQSTYQASTGVPLVAMHQAGIREPQWANSRHKSVSEANLLGIDG 128
RS D N + + G PL +H A +R +W+ RH V N L DG
Sbjct: 179 RSPND--APN-DAPNGPTHGSPLWRLHAASMRSLRWSGKRH-VVHVVNRLLYDG 228
>SB_36048| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 312
Score = 30.7 bits (66), Expect = 5.0
Identities = 20/56 (35%), Positives = 25/56 (44%), Gaps = 6/56 (10%)
Query: 14 PPNHNGSQRSGTPKPKTSIGSGMKPVQRIHRQSRG------VRETSSGYDSSDNET 63
P H+ S + G+PK KTS P + R R V E S YDS NE+
Sbjct: 193 PRYHDHSHQRGSPKTKTSCAPPAPPRRIGRRPGRSRMLEPLVEECESDYDSDSNES 248
>SB_24362| Best HMM Match : NOGCT (HMM E-Value=3.2)
Length = 273
Score = 30.7 bits (66), Expect = 5.0
Identities = 16/38 (42%), Positives = 23/38 (60%), Gaps = 1/38 (2%)
Query: 775 DDRF-LIALTVFYAVFSLIAIIAFVADCPSYRRSKERN 811
D+R LI LTV + VF LI I+A + C +RS ++
Sbjct: 216 DERIALICLTVIFGVFLLICIVALILMCCVRKRSGSKS 253
>SB_13913| Best HMM Match : WH2 (HMM E-Value=8.8e-05)
Length = 493
Score = 30.7 bits (66), Expect = 5.0
Identities = 22/88 (25%), Positives = 40/88 (45%), Gaps = 2/88 (2%)
Query: 205 NSLEITSPENKSTLVVSGLSFEVKCGEILAVLATAQHEATGLLDVLAGVRKKLSGDI--V 262
+S +++P+N+ + S + K E+ LAT EA L +KKL+ + V
Sbjct: 263 SSRRLSAPQNEEKVETPKSSKKEKLSELKRRLATPMREAIEAGIALKQTKKKLATPLREV 322
Query: 263 INGQPVASSTLRKVVAYVRNDTALCPTM 290
I +P T +K+ +R + P +
Sbjct: 323 IKSKPKLKETKKKLATPLRKEIQSKPAL 350
>SB_30501| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 373
Score = 30.7 bits (66), Expect = 5.0
Identities = 15/53 (28%), Positives = 26/53 (49%)
Query: 261 IVINGQPVASSTLRKVVAYVRNDTALCPTMSVEHTLRFHAALRKPRNTHSHVK 313
+V+ + + SS KV V++ T P V H +H + + NT+ +VK
Sbjct: 39 VVLGNEVIDSSFPDKVSMNVQDGTVRAPPEHVPHKYYYHRLINQTSNTNGYVK 91
>SB_30413| Best HMM Match : WSC (HMM E-Value=2.4)
Length = 259
Score = 30.3 bits (65), Expect = 6.6
Identities = 24/93 (25%), Positives = 41/93 (44%), Gaps = 5/93 (5%)
Query: 35 GMKPVQRIHRQSRGVRETSSGYDSSDNETTANYNKYSRKYRSD---PDFRMQNLQSTYQA 91
GM ++R + +E + D +A Y +S+ D D+ +S Q
Sbjct: 117 GMDNANMVYRLTGKEKECEEYRNIDDPTRSALYTGFSQPCDVDIFGGDWVRFTGESGAQM 176
Query: 92 STGVPLVAMHQAGIREPQWANSRHKSVSEANLL 124
T P++ H GI EP W N H +V++ N++
Sbjct: 177 PTD-PVLEKH-CGITEPGWLNGNHPAVTDGNVV 207
>SB_538| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 132
Score = 30.3 bits (65), Expect = 6.6
Identities = 19/57 (33%), Positives = 31/57 (54%), Gaps = 5/57 (8%)
Query: 277 VAYVRNDTALCPTMSVEHTLRFHAALRKPRNTHSHVKMGDRDRINLLIEELGLEQVR 333
VAY+ L S ++T +++ R TH +++GD ++NLLI GLE +R
Sbjct: 64 VAYLCGSIRLA-YFSGDNTFKYNTTYAASRATHDSIRLGD-SKLNLLI---GLEPIR 115
>SB_8818| Best HMM Match : I-set (HMM E-Value=0)
Length = 2787
Score = 30.3 bits (65), Expect = 6.6
Identities = 19/59 (32%), Positives = 29/59 (49%), Gaps = 4/59 (6%)
Query: 683 LVNGVMIQQADLPYYVKWLQYVSPSRWTIPEILRRELSETVLRNS-ISKDLRCTNKQRP 740
++NG ++++A Y+ W SP + TIPE ++ TV IS D R K P
Sbjct: 1 MINGELVKKAS---YLFWGFEASPDKGTIPEFTKKLQPVTVREGERISLDARVKGKPTP 56
>SB_31867| Best HMM Match : ABC_tran (HMM E-Value=1.3e-36)
Length = 674
Score = 29.9 bits (64), Expect = 8.7
Identities = 37/152 (24%), Positives = 64/152 (42%), Gaps = 13/152 (8%)
Query: 220 VSGLSFEVKCGEILAVLATAQHEATGLLDVLAGVRKKLSGDIVINGQPVASSTLRKVVAY 279
+ GLSF+V G +L V+ + LL+ + G G I + G+ +S A+
Sbjct: 368 LDGLSFDVPSGCLLGVIGAVGSGKSSLLNAILGELPLSEGSIRVQGRVAYASQ----QAW 423
Query: 280 VRNDTALCPTMSVEHTLRFHAALRKPRNTHSHVKMGDRDRINLLIEELGLEQVRDTNVGR 339
V N T + H + F + R + +K D+ L+ E V + V
Sbjct: 424 VYNST-------LRHNILFGKEYDEHR-YNDVIKACALDKDFELLSEGDETLVGERGVS- 474
Query: 340 LTRSEIRRLNVACQLLLDMAILILDQPTKEMD 371
L+ + R+++A + D I +LD P +D
Sbjct: 475 LSGGQRARISLARAVYADGDIYLLDDPLSAVD 506
>SB_56263| Best HMM Match : G-alpha (HMM E-Value=3.6)
Length = 700
Score = 29.9 bits (64), Expect = 8.7
Identities = 34/111 (30%), Positives = 44/111 (39%), Gaps = 11/111 (9%)
Query: 104 GIREPQWANSRHKSVSEANLLGIDGRPQRTQYTNRRNSVADFVPDGDHHSYLLPS----- 158
GI + +SR S+S N G QRT+ T RR S D LPS
Sbjct: 393 GIHKNIDQHSRSSSMSSFNGSGSFSNGQRTENT-RRTSTMDSAKTASSAGGSLPSESWKY 451
Query: 159 --SHLGG---RMSKAGSHMSVAHSRKHSTLRPGDQLDGYAHSAYIYPNYYV 204
S+ G + SKA MSV S L D+L G + P Y++
Sbjct: 452 VTSYFSGDSRKDSKATDDMSVTTEDSFSDLGIFDELLGIQEDHFSSPEYFM 502
>SB_20992| Best HMM Match : ABC_tran (HMM E-Value=1.3e-36)
Length = 641
Score = 29.9 bits (64), Expect = 8.7
Identities = 37/152 (24%), Positives = 64/152 (42%), Gaps = 13/152 (8%)
Query: 220 VSGLSFEVKCGEILAVLATAQHEATGLLDVLAGVRKKLSGDIVINGQPVASSTLRKVVAY 279
+ GLSF+V G +L V+ + LL+ + G G I + G+ +S A+
Sbjct: 37 LDGLSFDVPSGCLLGVIGAVGSGKSSLLNAILGELPLSEGSIRVQGRVAYASQ----QAW 92
Query: 280 VRNDTALCPTMSVEHTLRFHAALRKPRNTHSHVKMGDRDRINLLIEELGLEQVRDTNVGR 339
V N T + H + F + R + +K D+ L+ E V + V
Sbjct: 93 VYNST-------LRHNILFGKEYDEHR-YNDVIKACALDKDFELLSEGDETLVGERGVS- 143
Query: 340 LTRSEIRRLNVACQLLLDMAILILDQPTKEMD 371
L+ + R+++A + D I +LD P +D
Sbjct: 144 LSGGQRARISLARAVYADGDIYLLDDPLSAVD 175
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.322 0.136 0.408
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 26,039,425
Number of Sequences: 59808
Number of extensions: 1071718
Number of successful extensions: 2257
Number of sequences better than 10.0: 34
Number of HSP's better than 10.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 16
Number of HSP's that attempted gapping in prelim test: 2217
Number of HSP's gapped (non-prelim): 43
length of query: 823
length of database: 16,821,457
effective HSP length: 88
effective length of query: 735
effective length of database: 11,558,353
effective search space: 8495389455
effective search space used: 8495389455
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 64 (29.9 bits)
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