GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000220-TA|BGIBMGA000220-PA|IPR003439|ABC transporter
related, IPR013525|ABC-2 type transporter
         (823 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF127805-1|ABL67942.1|  461|Apis mellifera nicotinic acetylcholi...    24   4.4  
EF127804-1|ABL67941.1|  461|Apis mellifera nicotinic acetylcholi...    24   4.4  
EF127803-1|ABL67940.1|  461|Apis mellifera nicotinic acetylcholi...    24   4.4  
AY569697-1|AAS86650.1|  413|Apis mellifera complementary sex det...    24   4.4  
DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholi...    24   5.8  
AY569705-1|AAS86658.1|  419|Apis mellifera complementary sex det...    23   7.6  

>EF127805-1|ABL67942.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 6 protein.
          Length = 461

 Score = 24.2 bits (50), Expect = 4.4
 Identities = 15/69 (21%), Positives = 32/69 (46%), Gaps = 3/69 (4%)

Query: 651 INIQMVCRATIFLVPMEKTASVIAGVCLLLGTLVNGVMIQQAD---LPYYVKWLQYVSPS 707
           + + ++   T+FL  + +T   ++    LLG+  N +M   A    L   V    + +P 
Sbjct: 228 LGVTILLSLTVFLNLVAETLPQVSDAIPLLGSYFNCIMFMVASSVVLTVLVLIFHHRTPD 287

Query: 708 RWTIPEILR 716
           R+ +P  ++
Sbjct: 288 RYVMPSWIK 296


>EF127804-1|ABL67941.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 5 protein.
          Length = 461

 Score = 24.2 bits (50), Expect = 4.4
 Identities = 15/69 (21%), Positives = 32/69 (46%), Gaps = 3/69 (4%)

Query: 651 INIQMVCRATIFLVPMEKTASVIAGVCLLLGTLVNGVMIQQAD---LPYYVKWLQYVSPS 707
           + + ++   T+FL  + +T   ++    LLG+  N +M   A    L   V    + +P 
Sbjct: 228 LGVTILLSLTVFLNLVAETLPQVSDAIPLLGSYFNCIMFMVASSVVLTVLVLIFHHRTPD 287

Query: 708 RWTIPEILR 716
           R+ +P  ++
Sbjct: 288 RYVMPSWIK 296


>EF127803-1|ABL67940.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 4 protein.
          Length = 461

 Score = 24.2 bits (50), Expect = 4.4
 Identities = 15/69 (21%), Positives = 32/69 (46%), Gaps = 3/69 (4%)

Query: 651 INIQMVCRATIFLVPMEKTASVIAGVCLLLGTLVNGVMIQQAD---LPYYVKWLQYVSPS 707
           + + ++   T+FL  + +T   ++    LLG+  N +M   A    L   V    + +P 
Sbjct: 228 LGVTILLSLTVFLNLVAETLPQVSDAIPLLGSYFNCIMFMVASSVVLTVLVLIFHHRTPD 287

Query: 708 RWTIPEILR 716
           R+ +P  ++
Sbjct: 288 RYVMPSWIK 296


>AY569697-1|AAS86650.1|  413|Apis mellifera complementary sex
           determiner protein.
          Length = 413

 Score = 24.2 bits (50), Expect = 4.4
 Identities = 8/30 (26%), Positives = 18/30 (60%)

Query: 44  RQSRGVRETSSGYDSSDNETTANYNKYSRK 73
           ++ + +   S+ Y+ ++N    NYN Y++K
Sbjct: 310 KERKIISSLSNNYNYNNNNYKYNYNNYNKK 339


>DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 23.8 bits (49), Expect = 5.8
 Identities = 15/69 (21%), Positives = 32/69 (46%), Gaps = 3/69 (4%)

Query: 651 INIQMVCRATIFLVPMEKTASVIAGVCLLLGTLVNGVMIQQAD---LPYYVKWLQYVSPS 707
           + + ++   T+FL  + +T   ++    LLG+  N +M   A    L   V    + +P 
Sbjct: 296 LGVTILLSLTVFLNLVAETLPQVSDAIPLLGSYFNCIMFMVASSVVLTVLVLNFHHRTPD 355

Query: 708 RWTIPEILR 716
           R+ +P  ++
Sbjct: 356 RYVMPSWIK 364


>AY569705-1|AAS86658.1|  419|Apis mellifera complementary sex
           determiner protein.
          Length = 419

 Score = 23.4 bits (48), Expect = 7.6
 Identities = 8/20 (40%), Positives = 13/20 (65%)

Query: 54  SGYDSSDNETTANYNKYSRK 73
           S Y++ +N    NYN Y++K
Sbjct: 325 SNYNNYNNYNNNNYNNYNKK 344


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.322    0.136    0.408 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 228,796
Number of Sequences: 429
Number of extensions: 10286
Number of successful extensions: 33
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 31
Number of HSP's gapped (non-prelim): 6
length of query: 823
length of database: 140,377
effective HSP length: 63
effective length of query: 760
effective length of database: 113,350
effective search space: 86146000
effective search space used: 86146000
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 48 (23.4 bits)