Silkworm BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000219-TA|BGIBMGA000219-PA|IPR003957|Histone-like
transcription factor/archaeal histone/DNA topoisomerase,
IPR003958|Transcription factor CBF/NF-Y/archaeal histone,
IPR009072|Histone-fold
         (196 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY055846-1|AAL26542.2|  312|Tribolium castaneum cephalothorax pr...    21   6.5  
AY055845-1|AAL23670.2|  230|Tribolium castaneum cephalothorax pr...    21   6.5  
AF426396-1|AAL27023.2|  312|Tribolium castaneum cephalothorax pr...    21   6.5  
AF426395-1|AAL27022.2|  297|Tribolium castaneum cephalothorax pr...    21   6.5  
AF416773-1|AAL09697.1|  268|Tribolium castaneum cephalothorax pr...    21   6.5  
AF321227-2|AAK16422.1|  312|Tribolium castaneum Scr protein.           21   6.5  
AF227628-1|AAF42868.1|  312|Tribolium castaneum sex combs reduce...    21   6.5  
AM292339-1|CAL23151.2|  387|Tribolium castaneum gustatory recept...    21   8.6  
AM292338-1|CAL23150.2|  372|Tribolium castaneum gustatory recept...    21   8.6  

>AY055846-1|AAL26542.2|  312|Tribolium castaneum cephalothorax
           protein.
          Length = 312

 Score = 21.0 bits (42), Expect = 6.5
 Identities = 8/14 (57%), Positives = 9/14 (64%)

Query: 34  DENNSDSGSKSNAP 47
           + NNS SG  SN P
Sbjct: 185 NNNNSKSGQSSNPP 198


>AY055845-1|AAL23670.2|  230|Tribolium castaneum cephalothorax
           protein.
          Length = 230

 Score = 21.0 bits (42), Expect = 6.5
 Identities = 8/14 (57%), Positives = 9/14 (64%)

Query: 34  DENNSDSGSKSNAP 47
           + NNS SG  SN P
Sbjct: 185 NNNNSKSGQSSNPP 198


>AF426396-1|AAL27023.2|  312|Tribolium castaneum cephalothorax
           protein.
          Length = 312

 Score = 21.0 bits (42), Expect = 6.5
 Identities = 8/14 (57%), Positives = 9/14 (64%)

Query: 34  DENNSDSGSKSNAP 47
           + NNS SG  SN P
Sbjct: 185 NNNNSKSGQSSNPP 198


>AF426395-1|AAL27022.2|  297|Tribolium castaneum cephalothorax
           protein.
          Length = 297

 Score = 21.0 bits (42), Expect = 6.5
 Identities = 8/14 (57%), Positives = 9/14 (64%)

Query: 34  DENNSDSGSKSNAP 47
           + NNS SG  SN P
Sbjct: 185 NNNNSKSGQSSNPP 198


>AF416773-1|AAL09697.1|  268|Tribolium castaneum cephalothorax
           protein.
          Length = 268

 Score = 21.0 bits (42), Expect = 6.5
 Identities = 8/14 (57%), Positives = 9/14 (64%)

Query: 34  DENNSDSGSKSNAP 47
           + NNS SG  SN P
Sbjct: 141 NNNNSKSGQSSNPP 154


>AF321227-2|AAK16422.1|  312|Tribolium castaneum Scr protein.
          Length = 312

 Score = 21.0 bits (42), Expect = 6.5
 Identities = 8/14 (57%), Positives = 9/14 (64%)

Query: 34  DENNSDSGSKSNAP 47
           + NNS SG  SN P
Sbjct: 185 NNNNSKSGQSSNPP 198


>AF227628-1|AAF42868.1|  312|Tribolium castaneum sex combs reduced
           Scr protein.
          Length = 312

 Score = 21.0 bits (42), Expect = 6.5
 Identities = 8/14 (57%), Positives = 9/14 (64%)

Query: 34  DENNSDSGSKSNAP 47
           + NNS SG  SN P
Sbjct: 185 NNNNSKSGQSSNPP 198


>AM292339-1|CAL23151.2|  387|Tribolium castaneum gustatory receptor
           candidate 18 protein.
          Length = 387

 Score = 20.6 bits (41), Expect = 8.6
 Identities = 9/23 (39%), Positives = 13/23 (56%)

Query: 113 DVLFALNTLGFDNYVKPLRLYLT 135
           D    LN++ F N  KPL + L+
Sbjct: 256 DAYAVLNSVLFQNVYKPLPIVLS 278


>AM292338-1|CAL23150.2|  372|Tribolium castaneum gustatory receptor
           candidate 17 protein.
          Length = 372

 Score = 20.6 bits (41), Expect = 8.6
 Identities = 9/23 (39%), Positives = 13/23 (56%)

Query: 113 DVLFALNTLGFDNYVKPLRLYLT 135
           D    LN++ F N  KPL + L+
Sbjct: 256 DAYAVLNSVLFQNVYKPLPIVLS 278


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.315    0.133    0.368 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 44,225
Number of Sequences: 317
Number of extensions: 1721
Number of successful extensions: 9
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of query: 196
length of database: 114,650
effective HSP length: 54
effective length of query: 142
effective length of database: 97,532
effective search space: 13849544
effective search space used: 13849544
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.5 bits)
S2: 41 (20.6 bits)