Silkworm BLAST Result against nematostella

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000219-TA|BGIBMGA000219-PA|IPR003957|Histone-like
transcription factor/archaeal histone/DNA topoisomerase,
IPR003958|Transcription factor CBF/NF-Y/archaeal histone,
IPR009072|Histone-fold
         (196 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_25394| Best HMM Match : CBFD_NFYB_HMF (HMM E-Value=1.7e-11)         58   4e-09
SB_54377| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.5  
SB_42202| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   1.9  
SB_55830| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.6  
SB_36312| Best HMM Match : Ion_trans (HMM E-Value=0)                   29   2.6  
SB_27289| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.6  
SB_56523| Best HMM Match : Pox_A_type_inc (HMM E-Value=0)              29   2.6  
SB_7282| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   3.4  
SB_55025| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.5  
SB_23611| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.5  
SB_20654| Best HMM Match : Helicase_C (HMM E-Value=2.3e-21)            28   4.5  
SB_37031| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.9  
SB_10204| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.9  
SB_6876| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   5.9  
SB_58159| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.8  

>SB_25394| Best HMM Match : CBFD_NFYB_HMF (HMM E-Value=1.7e-11)
          Length = 149

 Score = 58.4 bits (135), Expect = 4e-09
 Identities = 27/91 (29%), Positives = 53/91 (58%)

Query: 49  REQDRFLPIANIAKIMKRAIPENGKIAKDARECVQECISEFISFVTSEASDRCKVEKRKT 108
           + +D  LP A + +++K A+P+   I+K+AR  + +  S F+ + TS A++     KRKT
Sbjct: 4   KPEDLNLPNAVVVRLVKEALPDGVSISKEARSAIGKAASVFVLYATSCANNFALSHKRKT 63

Query: 109 INGEDVLFALNTLGFDNYVKPLRLYLTKYRE 139
           +   DV+ AL  + F+ ++  L+  L  +++
Sbjct: 64  LQATDVISALEDMEFEQFIPQLKQDLNAFQK 94


>SB_54377| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 171

 Score = 29.9 bits (64), Expect = 1.5
 Identities = 19/70 (27%), Positives = 29/70 (41%)

Query: 14  DNGFLVADDTFVVNSDDVLEDENNSDSGSKSNAPLREQDRFLPIANIAKIMKRAIPENGK 73
           D  F V  D     S      E +++ G  SN     QD  + + N     KR + EN +
Sbjct: 54  DQEFEVEGDIPEPGSPGPAPVEPSNEPGLPSNGDTASQDELMVVENATPSRKRKLDENSR 113

Query: 74  IAKDARECVQ 83
           IA +  + V+
Sbjct: 114 IAPEQTKRVR 123


>SB_42202| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 783

 Score = 29.5 bits (63), Expect = 1.9
 Identities = 23/102 (22%), Positives = 45/102 (44%), Gaps = 3/102 (2%)

Query: 28  SDDVLEDENNSDSGSKSNAPLREQDRFLPIANIAK--IMKRAIPENGKIAKDARECVQEC 85
           S+D   + NN   G  S+   R++     I  + K  + K+    +G+    AR  +   
Sbjct: 444 SEDSDTNNNNKSEGHLSSHEKRQKKLKQKIQELEKENLSKKPWQMSGETGSKARP-INSL 502

Query: 86  ISEFISFVTSEASDRCKVEKRKTINGEDVLFALNTLGFDNYV 127
           + E ++F  +  + + K +  KT+   +  F  +T+  D YV
Sbjct: 503 LEEDLNFDHTAVAAQKKADGHKTLTAINPTFRASTVPSDKYV 544


>SB_55830| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 431

 Score = 29.1 bits (62), Expect = 2.6
 Identities = 15/77 (19%), Positives = 33/77 (42%), Gaps = 1/77 (1%)

Query: 8   NDLVRLDNGFLVADDTFVVNSDDVLEDENNSDSGSKSNAPLREQ-DRFLPIANIAKIMKR 66
           N ++  DN  ++ D+T ++  + ++  +N       S+  +    D F        + K 
Sbjct: 193 NTIIITDNTIIITDNTIIITDNTIIITDNTIIMTRSSDGRINHPFDHFQDTYGSLDLDKE 252

Query: 67  AIPENGKIAKDARECVQ 83
            +  +G  ++DA E  Q
Sbjct: 253 GVVGSGWFSEDANEITQ 269


>SB_36312| Best HMM Match : Ion_trans (HMM E-Value=0)
          Length = 1283

 Score = 29.1 bits (62), Expect = 2.6
 Identities = 25/103 (24%), Positives = 47/103 (45%), Gaps = 8/103 (7%)

Query: 21   DDTFVVNSDDVLEDENNSDSGSKSNAPLREQDRFLPIANIAKIMKRAIPENGKIAKDARE 80
            DD    + DD  EDE   D    + A   ++ + L      +I+K    E  K+ ++ R+
Sbjct: 1121 DDDIKESWDDDDEDEKKEDEAKNTEAAAPKKKKTLK-----QILKEK--EEQKLLEEKRK 1173

Query: 81   CVQ-ECISEFISFVTSEASDRCKVEKRKTINGEDVLFALNTLG 122
              + + + E    +T E     K+ ++K +   D+L A++T G
Sbjct: 1174 AEEKQKLEEEDKELTPEEQMAEKLRRQKIVEESDLLVAMDTFG 1216


>SB_27289| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 605

 Score = 29.1 bits (62), Expect = 2.6
 Identities = 15/50 (30%), Positives = 25/50 (50%)

Query: 46  APLREQDRFLPIANIAKIMKRAIPENGKIAKDARECVQECISEFISFVTS 95
           APL  + + LP+ N AKI+   I  + K      EC+++     + F+ S
Sbjct: 426 APLTIEGKELPVVNSAKILGLTISNDLKWNDHVLECIKKANKRRLYFIVS 475


>SB_56523| Best HMM Match : Pox_A_type_inc (HMM E-Value=0)
          Length = 2858

 Score = 29.1 bits (62), Expect = 2.6
 Identities = 15/49 (30%), Positives = 27/49 (55%)

Query: 3   SDELGNDLVRLDNGFLVADDTFVVNSDDVLEDENNSDSGSKSNAPLREQ 51
           ++EL ND+V  ++  + A+D        + + EN  D+  K NA L++Q
Sbjct: 892 ANELENDIVAANSDKVQAEDDLYAMQGKIGKLENQIDTLRKQNAQLKDQ 940


>SB_7282| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1702

 Score = 28.7 bits (61), Expect = 3.4
 Identities = 14/46 (30%), Positives = 25/46 (54%)

Query: 140  IVMSPVTINKLNKTIVLYSEDGTACVSNENEIDTQTESTILYVPTT 185
            I+ + + IN +  TI++Y+   T  ++  N I   T +TI+   TT
Sbjct: 1387 IINTIIIINIIINTIIIYTTINTIIINTINTIIINTMNTIIVTTTT 1432


>SB_55025| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2468

 Score = 28.3 bits (60), Expect = 4.5
 Identities = 14/41 (34%), Positives = 20/41 (48%)

Query: 2   DSDELGNDLVRLDNGFLVADDTFVVNSDDVLEDENNSDSGS 42
           D DE G  L+  +   ++ DD F V  DD +  +   D GS
Sbjct: 468 DDDEDGGSLMEEETADMMQDDAFAVYEDDNVFLQIRDDGGS 508


>SB_23611| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 126

 Score = 28.3 bits (60), Expect = 4.5
 Identities = 17/54 (31%), Positives = 25/54 (46%), Gaps = 1/54 (1%)

Query: 3  SDELGNDLVRLDNGFLVA-DDTFVVNSDDVLEDENNSDSGSKSNAPLREQDRFL 55
          SDE G D+ R D+      DD      +D  +DE + D GS +    R +  F+
Sbjct: 10 SDEEGEDITREDDDDEEEEDDDEDFEDEDDYDDEYDEDEGSSARRKRRRESGFI 63


>SB_20654| Best HMM Match : Helicase_C (HMM E-Value=2.3e-21)
          Length = 1728

 Score = 28.3 bits (60), Expect = 4.5
 Identities = 15/37 (40%), Positives = 22/37 (59%), Gaps = 1/37 (2%)

Query: 27   NSDDVLEDENNSDSGSKSNAPLREQDRFLPIANIAKI 63
            NSDD+L DEN S S   S+A   E   ++ + N+ K+
Sbjct: 1169 NSDDLLGDENMSSSSLPSDAEFNEFHPWI-VDNVRKL 1204


>SB_37031| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 100

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 14/36 (38%), Positives = 22/36 (61%), Gaps = 1/36 (2%)

Query: 4  DELGNDLVRLDNGFLVADDTFVVNSDDVLEDENNSD 39
          D++G D+   DN F+V DD    + DD  +D++N D
Sbjct: 39 DDVG-DIADDDNAFVVLDDDDDDDDDDDDDDDDNDD 73


>SB_10204| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 415

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 21/65 (32%), Positives = 30/65 (46%), Gaps = 1/65 (1%)

Query: 119 NTLGFDNYVKPLRL-YLTKYREIVMSPVTINKLNKTIVLYSEDGTACVSNENEIDTQTES 177
           +T   +NY+   R  Y TK  E   +  T N  NK I  YS   T   SN+   +  T++
Sbjct: 321 STKATENYITKARENYSTKAIENYSTKATENYSNKAIENYSTKATENYSNKAIENYSTKA 380

Query: 178 TILYV 182
           T  Y+
Sbjct: 381 TENYI 385


>SB_6876| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 362

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 16/51 (31%), Positives = 26/51 (50%), Gaps = 1/51 (1%)

Query: 6   LGNDLVRLD-NGFLVADDTFVVNSDDVLEDENNSDSGSKSNAPLREQDRFL 55
           +G+D V  D + F+V DD  V   D+V +D +N   G   N  + + D  +
Sbjct: 280 VGDDNVADDYDNFIVGDDDNVDGDDNVADDYDNFIVGDDDNVIVGDDDNVI 330


>SB_58159| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 443

 Score = 27.5 bits (58), Expect = 7.8
 Identities = 11/37 (29%), Positives = 20/37 (54%)

Query: 74  IAKDARECVQECISEFISFVTSEASDRCKVEKRKTIN 110
           ++++ +EC + C+    S   SE  D    E+R+ IN
Sbjct: 1   MSEETKECKRRCVKRSKSETESEDEDSYPTERRQQIN 37


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.315    0.133    0.368 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,661,871
Number of Sequences: 59808
Number of extensions: 291340
Number of successful extensions: 964
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 950
Number of HSP's gapped (non-prelim): 28
length of query: 196
length of database: 16,821,457
effective HSP length: 78
effective length of query: 118
effective length of database: 12,156,433
effective search space: 1434459094
effective search space used: 1434459094
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (22.0 bits)
S2: 58 (27.5 bits)