Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000219-TA|BGIBMGA000219-PA|IPR003957|Histone-like
transcription factor/archaeal histone/DNA topoisomerase,
IPR003958|Transcription factor CBF/NF-Y/archaeal histone,
IPR009072|Histone-fold
(196 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC23C11.08 |php3||CCAAT-binding factor complex subunit Php3 |S... 136 3e-33
SPBC30D10.02 |||transcription corepressor |Schizosaccharomyces p... 59 4e-10
SPBC3D6.09 |dpb4||DNA polymerase epsilon subunit Dpb4 |Schizosac... 50 3e-07
SPBC660.11 |tcg1|mug187|single-stranded telomeric binding protei... 27 2.4
SPAC27E2.09 |mak2|phk1|histidine kinase Mak2 |Schizosaccharomyce... 26 4.3
SPAC9G1.02 |wis4|wak1, wik1|MAP kinase kinase kinase Wis4|Schizo... 26 4.3
SPBP8B7.11 |nxt3||ubiquitin protease cofactor |Schizosaccharomyc... 25 5.6
SPBC1347.09 |||hexaprenyldihydroxybenzoate methyltransferase|Sch... 25 5.6
SPBC1539.02 |||sequence orphan|Schizosaccharomyces pombe|chr 2||... 25 7.4
SPCC16C4.07 |scw1||RNA-binding protein Scw1|Schizosaccharomyces ... 25 7.4
SPBC19C2.07 |fba1||fructose-bisphosphate aldolase Fba1|Schizosac... 25 7.4
SPAC1805.15c |pub2||ubiquitin-protein ligase Pub2|Schizosaccharo... 25 7.4
SPBC29A10.03c |rlf2|SPBC365.19c|chromatin remodeling complex sub... 25 7.4
SPBC1A4.03c |top2|ptr11|DNA topoisomerase II|Schizosaccharomyces... 25 9.8
SPBC11G11.07 ||SPBC18H10.01|karyopherin|Schizosaccharomyces pomb... 25 9.8
>SPAC23C11.08 |php3||CCAAT-binding factor complex subunit Php3
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 116
Score = 136 bits (328), Expect = 3e-33
Identities = 60/85 (70%), Positives = 75/85 (88%)
Query: 55 LPIANIAKIMKRAIPENGKIAKDARECVQECISEFISFVTSEASDRCKVEKRKTINGEDV 114
LPIAN+A+IMK A+PEN KI+K+A++CVQ+C+SEFISFVT EAS++C EKRKTI GEDV
Sbjct: 12 LPIANVARIMKSALPENAKISKEAKDCVQDCVSEFISFVTGEASEQCTQEKRKTITGEDV 71
Query: 115 LFALNTLGFDNYVKPLRLYLTKYRE 139
L ALNTLGF+NY + L++ LTKYRE
Sbjct: 72 LLALNTLGFENYAEVLKISLTKYRE 96
>SPBC30D10.02 |||transcription corepressor |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 161
Score = 59.3 bits (137), Expect = 4e-10
Identities = 29/83 (34%), Positives = 47/83 (56%)
Query: 45 NAPLREQDRFLPIANIAKIMKRAIPENGKIAKDARECVQECISEFISFVTSEASDRCKVE 104
N + + LP A + K++ +P + K+AR+ + EC EFI V+SEA++ C+ E
Sbjct: 2 NDGFADDELSLPKATVQKMVSDILPVDLTFTKEARDLLIECCVEFIHLVSSEANEICEKE 61
Query: 105 KRKTINGEDVLFALNTLGFDNYV 127
+KTI E ++ AL L F Y+
Sbjct: 62 AKKTIAAEHIIKALENLEFKEYI 84
>SPBC3D6.09 |dpb4||DNA polymerase epsilon subunit Dpb4
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 210
Score = 49.6 bits (113), Expect = 3e-07
Identities = 27/95 (28%), Positives = 49/95 (51%)
Query: 43 KSNAPLREQDRFLPIANIAKIMKRAIPENGKIAKDARECVQECISEFISFVTSEASDRCK 102
KS D LP + I +++K +PE + K+A + + + F+SF+TS + +
Sbjct: 5 KSKETSELDDLALPRSIIMRLVKGVLPEKSLVQKEALKAMINSATLFVSFLTSASGEIAT 64
Query: 103 VEKRKTINGEDVLFALNTLGFDNYVKPLRLYLTKY 137
RK + +DVL AL+ + + + K L+ +L Y
Sbjct: 65 NNNRKILMPQDVLNALDEIEYPEFSKTLKKHLEAY 99
>SPBC660.11 |tcg1|mug187|single-stranded telomeric binding protein
Tgc1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 348
Score = 26.6 bits (56), Expect = 2.4
Identities = 13/38 (34%), Positives = 18/38 (47%)
Query: 15 NGFLVADDTFVVNSDDVLEDENNSDSGSKSNAPLREQD 52
NG V D T VV S ED+ N ++ N P+ +
Sbjct: 279 NGKQVGDLTLVVKSAVFREDKQNDENEKNENEPIEASE 316
>SPAC27E2.09 |mak2|phk1|histidine kinase Mak2 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 2310
Score = 25.8 bits (54), Expect = 4.3
Identities = 13/39 (33%), Positives = 24/39 (61%), Gaps = 1/39 (2%)
Query: 112 EDVL-FALNTLGFDNYVKPLRLYLTKYREIVMSPVTINK 149
E++L F LN L FDN + + T +RE ++S +++ +
Sbjct: 717 EEILDFPLNVLQFDNDNESCQFSETFFREGILSKISLRR 755
>SPAC9G1.02 |wis4|wak1, wik1|MAP kinase kinase kinase
Wis4|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1401
Score = 25.8 bits (54), Expect = 4.3
Identities = 13/42 (30%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
Query: 45 NAPLREQDRFLPIA-NIAKIMKRAIPENGKIAKDARECVQEC 85
+ P E D I ++A + +IP+N KI+ AR+ +++C
Sbjct: 1245 STPWSEMDNEWAIMYHVAAMHTPSIPQNEKISSLARDFIEQC 1286
>SPBP8B7.11 |nxt3||ubiquitin protease cofactor |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 434
Score = 25.4 bits (53), Expect = 5.6
Identities = 12/34 (35%), Positives = 18/34 (52%)
Query: 10 LVRLDNGFLVADDTFVVNSDDVLEDENNSDSGSK 43
L NG+ V +D F +DV E+E + D+ K
Sbjct: 118 LAEQPNGYFVLNDIFRFLREDVEEEEESPDAVEK 151
>SPBC1347.09 |||hexaprenyldihydroxybenzoate
methyltransferase|Schizosaccharomyces pombe|chr
2|||Manual
Length = 284
Score = 25.4 bits (53), Expect = 5.6
Identities = 11/30 (36%), Positives = 19/30 (63%)
Query: 26 VNSDDVLEDENNSDSGSKSNAPLREQDRFL 55
V S +L+ E+NS++ + + P +QDR L
Sbjct: 31 VISSKILQFEDNSETSLRHDLPKYDQDRLL 60
>SPBC1539.02 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 386
Score = 25.0 bits (52), Expect = 7.4
Identities = 18/69 (26%), Positives = 32/69 (46%), Gaps = 1/69 (1%)
Query: 8 NDLVRLDNGFLVADDTFVVNSDDVLEDENNSDSGSKSNAPLREQDRFLPIANIAKIMKRA 67
N+L LD+ L + + V D L ++ +S + + E+ + +P+ + R
Sbjct: 137 NELA-LDDSLLSSSEKEVDEEADKLLEKVAEESSHPESVSILEEKKKIPLYPNGQPKYRK 195
Query: 68 IPENGKIAK 76
I ENGK K
Sbjct: 196 ILENGKKVK 204
>SPCC16C4.07 |scw1||RNA-binding protein Scw1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 561
Score = 25.0 bits (52), Expect = 7.4
Identities = 15/47 (31%), Positives = 24/47 (51%)
Query: 106 RKTINGEDVLFALNTLGFDNYVKPLRLYLTKYREIVMSPVTINKLNK 152
R T+ DV A + + DNY K + L+ E S V+ N+L++
Sbjct: 167 RDTLLSSDVYSACSMIILDNYRKGSQTNLSDETEGSESSVSFNRLSR 213
>SPBC19C2.07 |fba1||fructose-bisphosphate aldolase
Fba1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 358
Score = 25.0 bits (52), Expect = 7.4
Identities = 9/20 (45%), Positives = 16/20 (80%)
Query: 126 YVKPLRLYLTKYREIVMSPV 145
YV+ +R Y+ KY++ +M+PV
Sbjct: 295 YVEGVRDYVLKYKDYLMTPV 314
>SPAC1805.15c |pub2||ubiquitin-protein ligase
Pub2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 671
Score = 25.0 bits (52), Expect = 7.4
Identities = 18/64 (28%), Positives = 30/64 (46%), Gaps = 6/64 (9%)
Query: 110 NGEDVLFALNTLGFDNYVKPLRLYLTKYREIVMSPVTINKLNKTIVLYSEDGTACVSNEN 169
NG ++ A+N NY+K L T+++ + + N L + D + NEN
Sbjct: 491 NGRNI--AVNNQNKMNYLKAL----TEHKLVTSTEEQFNALKGGLNELIPDSVLQIFNEN 544
Query: 170 EIDT 173
E+DT
Sbjct: 545 ELDT 548
>SPBC29A10.03c |rlf2|SPBC365.19c|chromatin remodeling complex
subunit Rlf2 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 544
Score = 25.0 bits (52), Expect = 7.4
Identities = 11/25 (44%), Positives = 17/25 (68%)
Query: 14 DNGFLVADDTFVVNSDDVLEDENNS 38
D L ++D V NSDD++ED +N+
Sbjct: 355 DGEDLESEDEEVDNSDDIVEDGDNA 379
>SPBC1A4.03c |top2|ptr11|DNA topoisomerase II|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1485
Score = 24.6 bits (51), Expect = 9.8
Identities = 8/19 (42%), Positives = 16/19 (84%)
Query: 21 DDTFVVNSDDVLEDENNSD 39
DD+F+V++D+ ++D + SD
Sbjct: 1467 DDSFIVDNDEDVDDYDESD 1485
>SPBC11G11.07 ||SPBC18H10.01|karyopherin|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 955
Score = 24.6 bits (51), Expect = 9.8
Identities = 19/74 (25%), Positives = 39/74 (52%), Gaps = 5/74 (6%)
Query: 85 CISEFISFVTSEASDRCKVEKRKTINGEDVLFALNTLGFDNYVKPLRLYLTKYREIVMSP 144
C+ +F+S + EASD ++ +++ E++ ++ L DN L L L +Y + V +
Sbjct: 136 CVLQFLSVLPEEASD----PRKTSLSWEELCIRVDELLRDNGPAVLEL-LVQYVDAVRAS 190
Query: 145 VTINKLNKTIVLYS 158
+ + + +VL S
Sbjct: 191 GSPSSADLGLVLTS 204
Database: spombe
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.315 0.133 0.368
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 953,611
Number of Sequences: 5004
Number of extensions: 41462
Number of successful extensions: 133
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 120
Number of HSP's gapped (non-prelim): 15
length of query: 196
length of database: 2,362,478
effective HSP length: 69
effective length of query: 127
effective length of database: 2,017,202
effective search space: 256184654
effective search space used: 256184654
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (22.0 bits)
S2: 51 (24.6 bits)
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