Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000219-TA|BGIBMGA000219-PA|IPR003957|Histone-like
transcription factor/archaeal histone/DNA topoisomerase,
IPR003958|Transcription factor CBF/NF-Y/archaeal histone,
IPR009072|Histone-fold
(196 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_1252 - 35748000-35748173,35748243-35748375,35749771-357498... 161 3e-40
05_05_0135 - 22626163-22626198,22626391-22626441,22626516-226266... 156 1e-38
07_03_1205 - 24865991-24866077,24866255-24866259,24867746-24868343 154 5e-38
05_07_0196 + 28352320-28352522,28352679-28352808,28353774-283538... 153 7e-38
03_04_0055 + 16891212-16891848,16893166-16893206 149 1e-36
08_01_0498 - 4327502-4328395 146 1e-35
01_07_0092 - 41021743-41022276 138 3e-33
02_05_0591 - 30183105-30183869 131 4e-31
06_01_1181 + 10148653-10149405 124 4e-29
01_07_0091 - 41013837-41014271 113 7e-26
02_05_0592 - 30210219-30210757,30210898-30210919 81 8e-16
08_02_0516 + 18080706-18080760,18081796-18081885,18082479-180825... 67 8e-12
09_06_0334 - 22389087-22389223,22389578-22389696,22390192-22390439 56 3e-08
06_01_0877 + 6728883-6729651,6729989-6730224,6730423-6730704,673... 29 1.9
04_03_0923 + 20843477-20845044,20846081-20846996 29 1.9
03_06_0145 - 31973924-31975837 29 3.3
01_05_0681 - 24242485-24242560,24242721-24242785,24242874-242430... 29 3.3
05_01_0213 - 1606383-1606816,1607695-1608355 27 7.6
04_03_0550 + 17054155-17054182,17054438-17054503,17054504-17056959 27 7.6
02_05_1194 - 34881450-34881593,34882023-34882220,34882522-348826... 27 7.6
01_06_1332 - 36379736-36379909,36380395-36380459,36380534-363806... 27 7.6
>01_06_1252 -
35748000-35748173,35748243-35748375,35749771-35749847,
35750465-35750509,35750584-35750679,35751125-35751130,
35751259-35751388,35751510-35751706
Length = 285
Score = 161 bits (392), Expect = 3e-40
Identities = 74/110 (67%), Positives = 94/110 (85%), Gaps = 1/110 (0%)
Query: 32 LEDENNSDSGSKSNAP-LREQDRFLPIANIAKIMKRAIPENGKIAKDARECVQECISEFI 90
+ D + +SGS + +REQDRFLPIANI++IMK+A+P NGKIAKDA+E +QEC+SEFI
Sbjct: 1 MADAGHDESGSPPRSGGVREQDRFLPIANISRIMKKAVPANGKIAKDAKETLQECVSEFI 60
Query: 91 SFVTSEASDRCKVEKRKTINGEDVLFALNTLGFDNYVKPLRLYLTKYREI 140
SFVTSEASD+C+ EKRKTINGED+LFA+ TLGF+ YV PL++YL KYRE+
Sbjct: 61 SFVTSEASDKCQKEKRKTINGEDLLFAMGTLGFEEYVDPLKIYLHKYREM 110
>05_05_0135 -
22626163-22626198,22626391-22626441,22626516-22626608,
22627249-22627254,22628051-22628180,22628333-22628583
Length = 188
Score = 156 bits (379), Expect = 1e-38
Identities = 69/100 (69%), Positives = 89/100 (89%)
Query: 41 GSKSNAPLREQDRFLPIANIAKIMKRAIPENGKIAKDARECVQECISEFISFVTSEASDR 100
G +REQDRFLPIANI++IMK+AIP NGKIAKDA+E VQEC+SEFISF+TSEASD+
Sbjct: 29 GGGGGGGVREQDRFLPIANISRIMKKAIPANGKIAKDAKETVQECVSEFISFITSEASDK 88
Query: 101 CKVEKRKTINGEDVLFALNTLGFDNYVKPLRLYLTKYREI 140
C+ EKRKTING+D+L+A+ TLGF++Y++PL++YL KYRE+
Sbjct: 89 CQREKRKTINGDDLLWAMATLGFEDYIEPLKVYLQKYREM 128
>07_03_1205 - 24865991-24866077,24866255-24866259,24867746-24868343
Length = 229
Score = 154 bits (373), Expect = 5e-38
Identities = 69/110 (62%), Positives = 94/110 (85%), Gaps = 4/110 (3%)
Query: 35 ENNSDSGSKSNA----PLREQDRFLPIANIAKIMKRAIPENGKIAKDARECVQECISEFI 90
+++++SG SNA REQDRFLPIAN+++IMKRA+P N KI+KDA+E VQEC+SEFI
Sbjct: 3 DSDNESGGPSNAGEYASAREQDRFLPIANVSRIMKRALPANAKISKDAKETVQECVSEFI 62
Query: 91 SFVTSEASDRCKVEKRKTINGEDVLFALNTLGFDNYVKPLRLYLTKYREI 140
SF+T EASD+C+ EKRKTING+D+L+A+ TLGF++Y+ PL+LYL K+RE+
Sbjct: 63 SFITGEASDKCQREKRKTINGDDLLWAMTTLGFEDYIDPLKLYLHKFREL 112
>05_07_0196 +
28352320-28352522,28352679-28352808,28353774-28353851,
28355562-28355664,28356109-28356302,28356501-28356518
Length = 241
Score = 153 bits (372), Expect = 7e-38
Identities = 73/135 (54%), Positives = 100/135 (74%), Gaps = 2/135 (1%)
Query: 34 DENNSDSGSKSNAPLREQDRFLPIANIAKIMKRAIPENGKIAKDARECVQECISEFISFV 93
D + G +EQDRFLPIANI +IM+RA+PENGKIAKD++E VQEC+SEFISF+
Sbjct: 6 DGTENGGGGGGGGVGKEQDRFLPIANIGRIMRRAVPENGKIAKDSKESVQECVSEFISFI 65
Query: 94 TSEASDRCKVEKRKTINGEDVLFALNTLGFDNYVKPLRLYLTKYREIVMSPVTINKL--N 151
TSEASD+C EKRKTING+D+++++ TLGF++YV+PL+LYL YRE ++L
Sbjct: 66 TSEASDKCLKEKRKTINGDDLIWSMGTLGFEDYVEPLKLYLRLYREGDTKGSRASELPVK 125
Query: 152 KTIVLYSEDGTACVS 166
K +VL + G++ V+
Sbjct: 126 KDVVLNGDPGSSLVN 140
>03_04_0055 + 16891212-16891848,16893166-16893206
Length = 225
Score = 149 bits (361), Expect = 1e-36
Identities = 69/112 (61%), Positives = 93/112 (83%), Gaps = 6/112 (5%)
Query: 35 ENNSDSGSKSN------APLREQDRFLPIANIAKIMKRAIPENGKIAKDARECVQECISE 88
++++DSG SN + REQDRFLPIAN+++IMK+A+P N KI+KDA+E VQEC+SE
Sbjct: 3 DSDNDSGGPSNYAGGELSSPREQDRFLPIANVSRIMKKALPANAKISKDAKETVQECVSE 62
Query: 89 FISFVTSEASDRCKVEKRKTINGEDVLFALNTLGFDNYVKPLRLYLTKYREI 140
FISF+T EASD+C+ EKRKTING+D+L+A+ TLGF++YV PL+ YL K+REI
Sbjct: 63 FISFITGEASDKCQREKRKTINGDDLLWAMTTLGFEDYVDPLKHYLHKFREI 114
>08_01_0498 - 4327502-4328395
Length = 297
Score = 146 bits (354), Expect = 1e-35
Identities = 63/99 (63%), Positives = 85/99 (85%)
Query: 41 GSKSNAPLREQDRFLPIANIAKIMKRAIPENGKIAKDARECVQECISEFISFVTSEASDR 100
G ++P +EQDRFLPIAN+++IMKR++P N KI+K+++E VQEC+SEFISFVT EASD+
Sbjct: 49 GGGGDSPAKEQDRFLPIANVSRIMKRSLPANAKISKESKETVQECVSEFISFVTGEASDK 108
Query: 101 CKVEKRKTINGEDVLFALNTLGFDNYVKPLRLYLTKYRE 139
C+ EKRKTING+D+L+A+ TLGF+ YV PL+ YL +YRE
Sbjct: 109 CQREKRKTINGDDLLWAMTTLGFEAYVGPLKSYLNRYRE 147
>01_07_0092 - 41021743-41022276
Length = 177
Score = 138 bits (334), Expect = 3e-33
Identities = 59/93 (63%), Positives = 77/93 (82%)
Query: 48 LREQDRFLPIANIAKIMKRAIPENGKIAKDARECVQECISEFISFVTSEASDRCKVEKRK 107
++EQDR LPIAN+ +IMK+ +P N KI+K+A+E +QEC+SEFISFVT EASD+C EKRK
Sbjct: 32 IKEQDRLLPIANVGRIMKQILPPNAKISKEAKETMQECVSEFISFVTGEASDKCHKEKRK 91
Query: 108 TINGEDVLFALNTLGFDNYVKPLRLYLTKYREI 140
T+NG+DV +A LGFD+YV P+R YL KYRE+
Sbjct: 92 TVNGDDVCWAFGALGFDDYVDPMRRYLNKYREL 124
>02_05_0591 - 30183105-30183869
Length = 254
Score = 131 bits (316), Expect = 4e-31
Identities = 57/106 (53%), Positives = 84/106 (79%), Gaps = 1/106 (0%)
Query: 35 ENNSDSGSKSNAP-LREQDRFLPIANIAKIMKRAIPENGKIAKDARECVQECISEFISFV 93
+ N + + AP +REQDR +PIAN+ +IM+R +P + KI+ DA+E +QEC+SE+ISF+
Sbjct: 16 DGNGGAQQAAAAPAIREQDRLMPIANVIRIMRRVLPAHAKISDDAKETIQECVSEYISFI 75
Query: 94 TSEASDRCKVEKRKTINGEDVLFALNTLGFDNYVKPLRLYLTKYRE 139
T EA++RC+ E+RKTI EDVL+A++ LGFD+YV+PL +YL +YRE
Sbjct: 76 TGEANERCQREQRKTITAEDVLWAMSRLGFDDYVEPLGVYLHRYRE 121
>06_01_1181 + 10148653-10149405
Length = 250
Score = 124 bits (300), Expect = 4e-29
Identities = 54/94 (57%), Positives = 74/94 (78%)
Query: 46 APLREQDRFLPIANIAKIMKRAIPENGKIAKDARECVQECISEFISFVTSEASDRCKVEK 105
A +REQDR +PIAN+ +IM+R +P + KI+ DA+E +QEC+SEFISFVT EA+DRC E
Sbjct: 27 AVVREQDRLMPIANVIRIMRRVLPPHAKISDDAKEVIQECVSEFISFVTGEANDRCHREH 86
Query: 106 RKTINGEDVLFALNTLGFDNYVKPLRLYLTKYRE 139
RKT+ ED+++A++ LGFD+YV PL YL + RE
Sbjct: 87 RKTVTAEDLVWAMDRLGFDDYVPPLTAYLRRMRE 120
>01_07_0091 - 41013837-41014271
Length = 144
Score = 113 bits (273), Expect = 7e-26
Identities = 49/89 (55%), Positives = 66/89 (74%)
Query: 51 QDRFLPIANIAKIMKRAIPENGKIAKDARECVQECISEFISFVTSEASDRCKVEKRKTIN 110
QD LPIAN+ +IMK +P KI+K A+E +QEC +EFISFVT EAS+RC+ E+RKT+N
Sbjct: 5 QDNLLPIANVGRIMKDGLPPQAKISKRAKETIQECATEFISFVTGEASERCRRERRKTVN 64
Query: 111 GEDVLFALNTLGFDNYVKPLRLYLTKYRE 139
G+DV A+ +LG D+Y + YL +YRE
Sbjct: 65 GDDVCHAMRSLGLDHYADAMHRYLQRYRE 93
>02_05_0592 - 30210219-30210757,30210898-30210919
Length = 186
Score = 80.6 bits (190), Expect = 8e-16
Identities = 44/115 (38%), Positives = 63/115 (54%), Gaps = 9/115 (7%)
Query: 27 NSDDVLEDENNSDS--GSKSNAPLREQDRFLPIANIAKIMKRAIPENGKIAKDARECVQE 84
N D V + SD GS +NA L P+AN+ +++K+ +P KI A+ +
Sbjct: 11 NMDQVKKAAVRSDGVGGSATNAEL-------PMANLVRLIKKVLPGKAKIGGAAKGLTHD 63
Query: 85 CISEFISFVTSEASDRCKVEKRKTINGEDVLFALNTLGFDNYVKPLRLYLTKYRE 139
C EF+ FV EAS++ K E R+T+ ED L + LGFD YV P+ Y+ YRE
Sbjct: 64 CAVEFVGFVGDEASEKAKAEHRRTVAPEDYLGSFGDLGFDRYVDPMDAYIHGYRE 118
>08_02_0516 +
18080706-18080760,18081796-18081885,18082479-18082573,
18083658-18083726,18083812-18084393
Length = 296
Score = 67.3 bits (157), Expect = 8e-12
Identities = 31/82 (37%), Positives = 55/82 (67%)
Query: 50 EQDRFLPIANIAKIMKRAIPENGKIAKDARECVQECISEFISFVTSEASDRCKVEKRKTI 109
++D LP + + KI+K +P + ++A+DA++ + EC EFI+ ++SE+++ C E +KTI
Sbjct: 11 KEDVSLPKSTMFKIIKEMLPPDVRVARDAQDLLVECCVEFINLLSSESNEVCSREDKKTI 70
Query: 110 NGEDVLFALNTLGFDNYVKPLR 131
E VL AL LGF Y++ ++
Sbjct: 71 APEHVLRALQDLGFREYIEEVQ 92
>09_06_0334 - 22389087-22389223,22389578-22389696,22390192-22390439
Length = 167
Score = 55.6 bits (128), Expect = 3e-08
Identities = 26/65 (40%), Positives = 40/65 (61%)
Query: 74 IAKDARECVQECISEFISFVTSEASDRCKVEKRKTINGEDVLFALNTLGFDNYVKPLRLY 133
+ KDA E FI ++++ A+D CK KR+TIN +DVL AL+ + F +V+PL
Sbjct: 61 VNKDAMSAFAESARIFIHYLSATANDMCKESKRQTINADDVLKALDEMEFPEFVEPLNTS 120
Query: 134 LTKYR 138
L ++R
Sbjct: 121 LQEFR 125
>06_01_0877 +
6728883-6729651,6729989-6730224,6730423-6730704,
6731297-6731335,6731719-6731826,6731873-6732220
Length = 593
Score = 29.5 bits (63), Expect = 1.9
Identities = 21/70 (30%), Positives = 32/70 (45%), Gaps = 3/70 (4%)
Query: 103 VEKRKTINGEDVLFALNTLGFDNYVKPLRLYLTKYREIVMSPVTINKLNK--TIVLYSED 160
+E K + L+AL L FD+Y + L + K ++ M + IN++ K V Y D
Sbjct: 494 MEYSKLTSAGFCLYALGILKFDSYYPDVVLQMFKLEDVAMG-IWINEMKKDGLDVKYEND 552
Query: 161 GTACVSNENE 170
G V E
Sbjct: 553 GRILVEGCEE 562
>04_03_0923 + 20843477-20845044,20846081-20846996
Length = 827
Score = 29.5 bits (63), Expect = 1.9
Identities = 18/52 (34%), Positives = 25/52 (48%), Gaps = 3/52 (5%)
Query: 52 DRFLPIANIAKIMKRAIPENGKIAKDARECVQECISEFISFVTSEASDRCKV 103
D+F P+ +I ++ A EN K+A A EC Q C+S S C V
Sbjct: 356 DKFYPVQSI-RLPHSA--ENVKVATSADECSQACLSNCSCTAYSYGKSGCSV 404
>03_06_0145 - 31973924-31975837
Length = 637
Score = 28.7 bits (61), Expect = 3.3
Identities = 14/36 (38%), Positives = 18/36 (50%)
Query: 9 DLVRLDNGFLVADDTFVVNSDDVLEDENNSDSGSKS 44
D+ +D+G DD VV DV E + D GS S
Sbjct: 262 DMAHVDDGGAATDDNSVVEVTDVAEHTADVDDGSAS 297
>01_05_0681 -
24242485-24242560,24242721-24242785,24242874-24243029,
24243073-24243121,24243291-24243366,24243456-24243666,
24244038-24244160,24244245-24244363,24244439-24244532,
24245123-24245233,24245336-24245392
Length = 378
Score = 28.7 bits (61), Expect = 3.3
Identities = 22/81 (27%), Positives = 36/81 (44%), Gaps = 1/81 (1%)
Query: 76 KDARECVQECISEFISFVTSEASDRCKVEKRKTINGEDVLFALNTLGFDNYVKPLRLYLT 135
+D E V + IS+F+ ++ +D+ ING D + D YV PL L
Sbjct: 206 EDELELVCKPISDFLETISLNVADQDSSGTISDINGSDGCTPSGIISQD-YVVPLNLIER 264
Query: 136 KYREIVMSPVTINKLNKTIVL 156
YR + + + N ++VL
Sbjct: 265 YYRYVKGTGSLLATSNASLVL 285
>05_01_0213 - 1606383-1606816,1607695-1608355
Length = 364
Score = 27.5 bits (58), Expect = 7.6
Identities = 15/78 (19%), Positives = 39/78 (50%), Gaps = 5/78 (6%)
Query: 38 SDSGSKSNAPLREQDRFLP-IANIAKIMKRAIPENGK----IAKDARECVQECISEFISF 92
S+SG ++ + + + + F+P ++ + + R + E+ + D+ + +SE +
Sbjct: 261 SESGMRNRSVMNKSEVFIPGVSGTLQFICRLVEEDLNSVIWLTSDSENIAADMVSEILDQ 320
Query: 93 VTSEASDRCKVEKRKTIN 110
+TSE +D +T++
Sbjct: 321 LTSETADELMQTGSETVH 338
>04_03_0550 + 17054155-17054182,17054438-17054503,17054504-17056959
Length = 849
Score = 27.5 bits (58), Expect = 7.6
Identities = 23/78 (29%), Positives = 38/78 (48%), Gaps = 10/78 (12%)
Query: 68 IPENGKIAKDAR---ECVQECISEFISFVTSEASDRCKV--EKRKTINGEDVLFALNTLG 122
+P + +I +DA EC Q C+S+ S + RC V K +N D ++ +
Sbjct: 414 LPYDPQIMQDATTQGECAQACLSDCSCTAYSYQNSRCSVWHGKLLNVNKNDGIY----IN 469
Query: 123 FDNYVKPLRLYLTKYREI 140
DN V LRL T ++++
Sbjct: 470 ADN-VLHLRLAATDFQDL 486
>02_05_1194 -
34881450-34881593,34882023-34882220,34882522-34882638,
34882753-34882908,34883192-34883341,34883418-34883527,
34883589-34883730,34883836-34884054,34887004-34887099,
34887187-34887489,34887575-34887624,34888003-34888114,
34888204-34888279,34888389-34888684,34888763-34888872,
34889071-34889120,34890439-34890488,34890636-34890816,
34890901-34890932
Length = 863
Score = 27.5 bits (58), Expect = 7.6
Identities = 10/29 (34%), Positives = 17/29 (58%)
Query: 144 PVTINKLNKTIVLYSEDGTACVSNENEID 172
P + + K +V+Y DGT S+ N++D
Sbjct: 498 PGNMRHVPKNLVMYGADGTGLASSSNQMD 526
>01_06_1332 -
36379736-36379909,36380395-36380459,36380534-36380612,
36380794-36380868,36381106-36381609,36382046-36382246,
36383033-36383566
Length = 543
Score = 27.5 bits (58), Expect = 7.6
Identities = 14/47 (29%), Positives = 22/47 (46%)
Query: 72 GKIAKDARECVQECISEFISFVTSEASDRCKVEKRKTINGEDVLFAL 118
GK+ + + + E +FI VT+ A K K + +DVL L
Sbjct: 418 GKVDPEVEDLLLEIADDFIDSVTAFACTLAKHRKSSVLEAKDVLLHL 464
Database: rice
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.315 0.133 0.368
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,408,752
Number of Sequences: 37544
Number of extensions: 216830
Number of successful extensions: 474
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 453
Number of HSP's gapped (non-prelim): 26
length of query: 196
length of database: 14,793,348
effective HSP length: 78
effective length of query: 118
effective length of database: 11,864,916
effective search space: 1400060088
effective search space used: 1400060088
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (22.0 bits)
S2: 58 (27.5 bits)
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