GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000219-TA|BGIBMGA000219-PA|IPR003957|Histone-like
transcription factor/archaeal histone/DNA topoisomerase,
IPR003958|Transcription factor CBF/NF-Y/archaeal histone,
IPR009072|Histone-fold
         (196 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X91509-1|CAA62809.1|  103|Apis mellifera histone H4 protein.           24   0.83 
Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein RJP...    21   7.8  
DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channe...    21   7.8  
DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.          21   7.8  

>X91509-1|CAA62809.1|  103|Apis mellifera histone H4 protein.
          Length = 103

 Score = 24.2 bits (50), Expect = 0.83
 Identities = 12/34 (35%), Positives = 18/34 (52%)

Query: 89  FISFVTSEASDRCKVEKRKTINGEDVLFALNTLG 122
           F+  V  +A    +  KRKT+   DV++AL   G
Sbjct: 62  FLENVIRDAVTYTEHTKRKTVTAMDVVYALKIQG 95


>Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein
           RJP57-2 protein.
          Length = 464

 Score = 21.0 bits (42), Expect = 7.8
 Identities = 11/33 (33%), Positives = 16/33 (48%)

Query: 20  ADDTFVVNSDDVLEDENNSDSGSKSNAPLREQD 52
           ADD+F   S   L   ++  S  + N  L+E D
Sbjct: 217 ADDSFHRLSSHTLNHNSDKMSDQQENLTLKEVD 249


>DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channel
           protein.
          Length = 463

 Score = 21.0 bits (42), Expect = 7.8
 Identities = 8/24 (33%), Positives = 13/24 (54%)

Query: 28  SDDVLEDENNSDSGSKSNAPLREQ 51
           S D+ E E +SD       PL+++
Sbjct: 311 SSDLSESETSSDEEEADTRPLKKE 334


>DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.
          Length = 495

 Score = 21.0 bits (42), Expect = 7.8
 Identities = 9/48 (18%), Positives = 22/48 (45%)

Query: 129 PLRLYLTKYREIVMSPVTINKLNKTIVLYSEDGTACVSNENEIDTQTE 176
           P      +Y   + +  T + + ++I    +DGT  ++   ++  +TE
Sbjct: 162 PKNTSAVRYTHYIGTLATNDNILESISYVKDDGTEGIAKSGDVLVETE 209


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.315    0.133    0.368 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 57,446
Number of Sequences: 429
Number of extensions: 2518
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of query: 196
length of database: 140,377
effective HSP length: 55
effective length of query: 141
effective length of database: 116,782
effective search space: 16466262
effective search space used: 16466262
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (22.0 bits)
S2: 42 (21.0 bits)