Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000219-TA|BGIBMGA000219-PA|IPR003957|Histone-like
transcription factor/archaeal histone/DNA topoisomerase,
IPR003958|Transcription factor CBF/NF-Y/archaeal histone,
IPR009072|Histone-fold
(196 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g14540.1 68417.m02240 CCAAT-box binding transcription factor ... 158 2e-39
At2g38880.3 68415.m04778 histone-like transcription factor (CBF/... 154 3e-38
At2g38880.2 68415.m04777 histone-like transcription factor (CBF/... 154 3e-38
At2g38880.1 68415.m04779 histone-like transcription factor (CBF/... 154 4e-38
At2g37060.2 68415.m04548 CCAAT-box binding transcription factor,... 154 4e-38
At2g37060.1 68415.m04547 CCAAT-box binding transcription factor,... 154 4e-38
At5g47640.1 68418.m05882 CCAAT-box binding transcription factor ... 153 1e-37
At3g53340.1 68416.m05885 CCAAT-box binding transcription factor,... 152 2e-37
At2g13570.1 68415.m01496 CCAAT-box binding transcription factor,... 148 3e-36
At5g47670.1 68418.m05885 CCAAT-box binding transcription factor ... 137 4e-33
At1g21970.1 68414.m02749 CCAAT-box binding transcription factor ... 129 1e-30
At2g47810.1 68415.m05967 histone-like transcription factor (CBF/... 128 3e-30
At1g09030.1 68414.m01007 histone-like transcription factor (CBF/... 119 2e-27
At5g23090.2 68418.m02700 TATA-binding protein-associated phospho... 72 2e-13
At5g23090.1 68418.m02699 TATA-binding protein-associated phospho... 72 2e-13
At5g08190.1 68418.m00957 TATA-binding protein-associated phospho... 71 4e-13
At5g23090.3 68418.m02701 TATA-binding protein-associated phospho... 60 1e-09
At2g27470.1 68415.m03320 CCAAT-box binding transcription factor ... 48 3e-06
At5g58130.1 68418.m07273 RNA recognition motif (RRM)-containing ... 29 1.6
At5g50480.1 68418.m06252 CCAAT-box binding transcription factor ... 29 1.6
At1g61690.1 68414.m06958 tetratricopeptide repeat (TPR)-containi... 29 1.6
At1g53935.1 68414.m06141 hypothetical protein 29 1.6
At5g64810.1 68418.m08150 WRKY family transcription factor contai... 29 2.1
At3g15600.1 68416.m01976 hypothetical protein low similarity to ... 29 2.1
At2g33240.1 68415.m04072 myosin, putative similar to myosin (GI:... 29 2.1
At5g10370.1 68418.m01203 helicase domain-containing protein / IB... 29 2.8
At2g07770.1 68415.m01005 hypothetical protein low similarity to ... 29 2.8
At1g77840.1 68414.m09070 eukaryotic translation initiation facto... 28 3.6
At5g43250.1 68418.m05285 transcription factor, putative similar ... 28 4.8
At3g13870.2 68416.m01752 root hair defective 3 (RHD3) identical ... 27 8.4
At3g13870.1 68416.m01753 root hair defective 3 (RHD3) identical ... 27 8.4
At1g66730.1 68414.m07585 ATP dependent DNA ligase family protein... 27 8.4
At1g65790.1 68414.m07466 S-receptor protein kinase, putative sim... 27 8.4
At1g17440.2 68414.m02133 transcription initiation factor IID (TF... 27 8.4
At1g17440.1 68414.m02132 transcription initiation factor IID (TF... 27 8.4
>At4g14540.1 68417.m02240 CCAAT-box binding transcription factor
subunit B (NF-YB) (HAP3 ) (AHAP3) family contains Pfam
PF00808 : Histone-like transcription factor (CBF/NF-Y)
and archaeal histone; similar to LEC1-like protein
(GI:22536010) [Phaseolus coccineus]
Length = 161
Score = 158 bits (384), Expect = 2e-39
Identities = 70/111 (63%), Positives = 93/111 (83%), Gaps = 2/111 (1%)
Query: 32 LEDENNSDSGSKS--NAPLREQDRFLPIANIAKIMKRAIPENGKIAKDARECVQECISEF 89
+ D +N G K NA REQDRFLPIAN+++IMK+A+P N KI+KDA+E VQEC+SEF
Sbjct: 1 MADSDNDSGGHKDGGNASTREQDRFLPIANVSRIMKKALPANAKISKDAKETVQECVSEF 60
Query: 90 ISFVTSEASDRCKVEKRKTINGEDVLFALNTLGFDNYVKPLRLYLTKYREI 140
ISF+T EASD+C+ EKRKTING+D+L+A+ TLGF++YV+PL++YL KYRE+
Sbjct: 61 ISFITGEASDKCQREKRKTINGDDLLWAMTTLGFEDYVEPLKVYLQKYREV 111
>At2g38880.3 68415.m04778 histone-like transcription factor
(CBF/NF-Y) family protein similar to CAAT-box DNA
binding protein subunit B (NF-YB) (SP:P25209) (GI:22380)
[Zea mays] and CCAAT-binding transcription factor
subunit A (CBF-A) (NF-Y protein chain B) (NF-YB)
(CAAT-box DNA binding protein subunit B) (SP:P25210)
[Petromyzon marinus]; contains a CBF/NF-Y subunit
signature (PDOC00578) presernt in members of
histone-like transcription factor family; contains Pfam
PF00808 : Histone-like transcription factor (CBF/NF-Y)
and archaeal histone
Length = 112
Score = 154 bits (374), Expect = 3e-38
Identities = 64/100 (64%), Positives = 90/100 (90%)
Query: 41 GSKSNAPLREQDRFLPIANIAKIMKRAIPENGKIAKDARECVQECISEFISFVTSEASDR 100
G +S +REQDR+LPIANI++IMK+A+P NGKI KDA++ VQEC+SEFISF+TSEASD+
Sbjct: 12 GGESGGSVREQDRYLPIANISRIMKKALPPNGKIGKDAKDTVQECVSEFISFITSEASDK 71
Query: 101 CKVEKRKTINGEDVLFALNTLGFDNYVKPLRLYLTKYREI 140
C+ EKRKT+NG+D+L+A+ TLGF++Y++PL++YL +YRE+
Sbjct: 72 CQKEKRKTVNGDDLLWAMATLGFEDYLEPLKIYLARYREV 111
>At2g38880.2 68415.m04777 histone-like transcription factor
(CBF/NF-Y) family protein similar to CAAT-box DNA
binding protein subunit B (NF-YB) (SP:P25209) (GI:22380)
[Zea mays] and CCAAT-binding transcription factor
subunit A (CBF-A) (NF-Y protein chain B) (NF-YB)
(CAAT-box DNA binding protein subunit B) (SP:P25210)
[Petromyzon marinus]; contains a CBF/NF-Y subunit
signature (PDOC00578) presernt in members of
histone-like transcription factor family; contains Pfam
PF00808 : Histone-like transcription factor (CBF/NF-Y)
and archaeal histone
Length = 112
Score = 154 bits (374), Expect = 3e-38
Identities = 64/100 (64%), Positives = 90/100 (90%)
Query: 41 GSKSNAPLREQDRFLPIANIAKIMKRAIPENGKIAKDARECVQECISEFISFVTSEASDR 100
G +S +REQDR+LPIANI++IMK+A+P NGKI KDA++ VQEC+SEFISF+TSEASD+
Sbjct: 12 GGESGGSVREQDRYLPIANISRIMKKALPPNGKIGKDAKDTVQECVSEFISFITSEASDK 71
Query: 101 CKVEKRKTINGEDVLFALNTLGFDNYVKPLRLYLTKYREI 140
C+ EKRKT+NG+D+L+A+ TLGF++Y++PL++YL +YRE+
Sbjct: 72 CQKEKRKTVNGDDLLWAMATLGFEDYLEPLKIYLARYREV 111
>At2g38880.1 68415.m04779 histone-like transcription factor
(CBF/NF-Y) family protein similar to CAAT-box DNA
binding protein subunit B (NF-YB) (SP:P25209) (GI:22380)
[Zea mays] and CCAAT-binding transcription factor
subunit A (CBF-A) (NF-Y protein chain B) (NF-YB)
(CAAT-box DNA binding protein subunit B) (SP:P25210)
[Petromyzon marinus]; contains a CBF/NF-Y subunit
signature (PDOC00578) presernt in members of
histone-like transcription factor family; contains Pfam
PF00808 : Histone-like transcription factor (CBF/NF-Y)
and archaeal histone
Length = 141
Score = 154 bits (373), Expect = 4e-38
Identities = 64/100 (64%), Positives = 90/100 (90%)
Query: 41 GSKSNAPLREQDRFLPIANIAKIMKRAIPENGKIAKDARECVQECISEFISFVTSEASDR 100
G +S +REQDR+LPIANI++IMK+A+P NGKI KDA++ VQEC+SEFISF+TSEASD+
Sbjct: 12 GGESGGSVREQDRYLPIANISRIMKKALPPNGKIGKDAKDTVQECVSEFISFITSEASDK 71
Query: 101 CKVEKRKTINGEDVLFALNTLGFDNYVKPLRLYLTKYREI 140
C+ EKRKT+NG+D+L+A+ TLGF++Y++PL++YL +YRE+
Sbjct: 72 CQKEKRKTVNGDDLLWAMATLGFEDYLEPLKIYLARYREL 111
>At2g37060.2 68415.m04548 CCAAT-box binding transcription factor,
putative similar to CAAT-box DNA binding protein subunit
B (NF-YB) (SP:P25209) (GI:22380) [Zea mays]; contains
Pfam PF00808 : Histone-like transcription factor
(CBF/NF-Y) and archaeal histone
Length = 173
Score = 154 bits (373), Expect = 4e-38
Identities = 70/106 (66%), Positives = 92/106 (86%), Gaps = 1/106 (0%)
Query: 35 ENNSDSGSKSNAPLREQDRFLPIANIAKIMKRAIPENGKIAKDARECVQECISEFISFVT 94
E+ D +S +REQDRFLPIANI++IMKR +P NGKIAKDA+E VQEC+SEFISFVT
Sbjct: 16 ESGGDQSPRS-LHVREQDRFLPIANISRIMKRGLPANGKIAKDAKEIVQECVSEFISFVT 74
Query: 95 SEASDRCKVEKRKTINGEDVLFALNTLGFDNYVKPLRLYLTKYREI 140
SEASD+C+ EKRKTING+D+L+A+ TLGF++Y++PL++YL +YRE+
Sbjct: 75 SEASDKCQREKRKTINGDDLLWAMATLGFEDYMEPLKVYLMRYREM 120
>At2g37060.1 68415.m04547 CCAAT-box binding transcription factor,
putative similar to CAAT-box DNA binding protein subunit
B (NF-YB) (SP:P25209) (GI:22380) [Zea mays]; contains
Pfam PF00808 : Histone-like transcription factor
(CBF/NF-Y) and archaeal histone
Length = 173
Score = 154 bits (373), Expect = 4e-38
Identities = 70/106 (66%), Positives = 92/106 (86%), Gaps = 1/106 (0%)
Query: 35 ENNSDSGSKSNAPLREQDRFLPIANIAKIMKRAIPENGKIAKDARECVQECISEFISFVT 94
E+ D +S +REQDRFLPIANI++IMKR +P NGKIAKDA+E VQEC+SEFISFVT
Sbjct: 16 ESGGDQSPRS-LHVREQDRFLPIANISRIMKRGLPANGKIAKDAKEIVQECVSEFISFVT 74
Query: 95 SEASDRCKVEKRKTINGEDVLFALNTLGFDNYVKPLRLYLTKYREI 140
SEASD+C+ EKRKTING+D+L+A+ TLGF++Y++PL++YL +YRE+
Sbjct: 75 SEASDKCQREKRKTINGDDLLWAMATLGFEDYMEPLKVYLMRYREM 120
>At5g47640.1 68418.m05882 CCAAT-box binding transcription factor
subunit B (NF-YB) (HAP3 ) (AHAP3) family (Hap3b) similar
to CAAT-box DNA binding protein subunit B (NF-YB)
(SP:P25209) (GI:22380) [Zea mays]; contains Pfam PF00808
: Histone-like transcription factor (CBF/NF-Y) and
archaeal histone; identical to cDNA transcription factor
Hap3b (Hap3b) mRNA, partial cds GI:9965734
Length = 190
Score = 153 bits (370), Expect = 1e-37
Identities = 67/104 (64%), Positives = 92/104 (88%), Gaps = 1/104 (0%)
Query: 37 NSDSGSKSNAPLREQDRFLPIANIAKIMKRAIPENGKIAKDARECVQECISEFISFVTSE 96
N+ +G S +P REQDRFLPIAN+++IMK+A+P N KI+KDA+E +QEC+SEFISFVT E
Sbjct: 15 NNQNGQSSLSP-REQDRFLPIANVSRIMKKALPANAKISKDAKETMQECVSEFISFVTGE 73
Query: 97 ASDRCKVEKRKTINGEDVLFALNTLGFDNYVKPLRLYLTKYREI 140
ASD+C+ EKRKTING+D+L+A+ TLGF++YV+PL++YL ++REI
Sbjct: 74 ASDKCQKEKRKTINGDDLLWAMTTLGFEDYVEPLKVYLQRFREI 117
>At3g53340.1 68416.m05885 CCAAT-box binding transcription factor,
putative similar to CAAT-box DNA binding protein subunit
B (NF-YB) (SP:P25209) (GI:22380) [Zea mays]; contains
Pfam PF00808 : Histone-like transcription factor
(CBF/NF-Y) and archaeal histone
Length = 228
Score = 152 bits (368), Expect = 2e-37
Identities = 69/106 (65%), Positives = 91/106 (85%), Gaps = 1/106 (0%)
Query: 35 ENNSDSGSKSNAPLREQDRFLPIANIAKIMKRAIPENGKIAKDARECVQECISEFISFVT 94
E+ D +S +REQDRFLPIANI++IMKR +P NGKIAKDA+E +QEC+SEFISFVT
Sbjct: 15 ESGGDQSPRS-LNVREQDRFLPIANISRIMKRGLPLNGKIAKDAKETMQECVSEFISFVT 73
Query: 95 SEASDRCKVEKRKTINGEDVLFALNTLGFDNYVKPLRLYLTKYREI 140
SEASD+C+ EKRKTING+D+L+A+ TLGF++Y+ PL++YL +YRE+
Sbjct: 74 SEASDKCQREKRKTINGDDLLWAMATLGFEDYIDPLKVYLMRYREM 119
>At2g13570.1 68415.m01496 CCAAT-box binding transcription factor,
putative similar to CAAT-box DNA binding protein subunit
B (NF-YB) (SP:P25209) (GI:22380) [Zea mays]; contains
Pfam PF00808 : Histone-like transcription factor
(CBF/NF-Y) and archaeal histone
Length = 215
Score = 148 bits (358), Expect = 3e-36
Identities = 64/102 (62%), Positives = 86/102 (84%)
Query: 38 SDSGSKSNAPLREQDRFLPIANIAKIMKRAIPENGKIAKDARECVQECISEFISFVTSEA 97
S + +N +EQDRFLPIAN+ +IMK+ +P NGKI+KDA+E VQEC+SEFISFVT EA
Sbjct: 24 SSKTNNNNNNNKEQDRFLPIANVGRIMKKVLPGNGKISKDAKETVQECVSEFISFVTGEA 83
Query: 98 SDRCKVEKRKTINGEDVLFALNTLGFDNYVKPLRLYLTKYRE 139
SD+C+ EKRKTING+D+++A+ TLGF++YV PL++YL KYR+
Sbjct: 84 SDKCQREKRKTINGDDIIWAITTLGFEDYVAPLKVYLCKYRD 125
>At5g47670.1 68418.m05885 CCAAT-box binding transcription factor
family protein / leafy cotyledon 1-related (L1L)
supporting cDNA gi|27372446|gb|AY138461.1|; contains
Pfam PF00808 : Histone-like transcription factor
(CBF/NF-Y) and archaeal histone; contains similarity to
CCAAT-binding transcription factor subunit A (CBF-A)
(NF-Y protein chain B) (NF-YB) (CAAT-box DNA binding
protein subunit B) (Swiss-Prot:P25209) [Zea mays]
Length = 234
Score = 137 bits (332), Expect = 4e-33
Identities = 56/105 (53%), Positives = 85/105 (80%)
Query: 36 NNSDSGSKSNAPLREQDRFLPIANIAKIMKRAIPENGKIAKDARECVQECISEFISFVTS 95
N + +G + +REQDRF+PIAN+ +IM+R +P + KI+ D++E +QEC+SE+ISF+T
Sbjct: 44 NKTSNGGEEECTVREQDRFMPIANVIRIMRRILPAHAKISDDSKETIQECVSEYISFITG 103
Query: 96 EASDRCKVEKRKTINGEDVLFALNTLGFDNYVKPLRLYLTKYREI 140
EA++RC+ E+RKTI EDVL+A++ LGFD+Y++PL LYL +YRE+
Sbjct: 104 EANERCQREQRKTITAEDVLWAMSKLGFDDYIEPLTLYLHRYREL 148
>At1g21970.1 68414.m02749 CCAAT-box binding transcription factor
(LEC1) similar to CAAT-box DNA binding protein subunit B
(NF-YB) (SP:P25209) (GI:22380) [Zea mays]; identical to
GB:AAC39488 GI:3282674 from [Arabidopsis thaliana] (Cell
93 (7), 1195-1205 (1998)); identified in Plant Cell 2003
Jan;15(1):5-18; contains Pfam PF00808 : Histone-like
transcription factor (CBF/NF-Y) and archaeal histone
Length = 238
Score = 129 bits (311), Expect = 1e-30
Identities = 52/92 (56%), Positives = 78/92 (84%)
Query: 49 REQDRFLPIANIAKIMKRAIPENGKIAKDARECVQECISEFISFVTSEASDRCKVEKRKT 108
REQD+++PIAN+ +IM++ +P + KI+ DA+E +QEC+SE+ISFVT EA++RC+ E+RKT
Sbjct: 58 REQDQYMPIANVIRIMRKTLPSHAKISDDAKETIQECVSEYISFVTGEANERCQREQRKT 117
Query: 109 INGEDVLFALNTLGFDNYVKPLRLYLTKYREI 140
I ED+L+A++ LGFDNYV PL +++ +YREI
Sbjct: 118 ITAEDILWAMSKLGFDNYVDPLTVFINRYREI 149
>At2g47810.1 68415.m05967 histone-like transcription factor
(CBF/NF-Y) family protein contains Pfam PF00808 :
Histone-like transcription factor (CBF/NF-Y) and
archaeal histone; similar to LEC1-like protein
(GI:22536010) [Phaseolus coccineus]
Length = 160
Score = 128 bits (308), Expect = 3e-30
Identities = 54/100 (54%), Positives = 76/100 (76%)
Query: 39 DSGSKSNAPLREQDRFLPIANIAKIMKRAIPENGKIAKDARECVQECISEFISFVTSEAS 98
D + + ++EQDR LPIAN+ +IMK +P N K++K+A+E +QEC+SEFISFVT EAS
Sbjct: 40 DQQQEESMMVKEQDRLLPIANVGRIMKNILPANAKVSKEAKETMQECVSEFISFVTGEAS 99
Query: 99 DRCKVEKRKTINGEDVLFALNTLGFDNYVKPLRLYLTKYR 138
D+C EKRKT+NG+D+ +A+ LGFD+Y L+ YL +YR
Sbjct: 100 DKCHKEKRKTVNGDDICWAMANLGFDDYAAQLKKYLHRYR 139
>At1g09030.1 68414.m01007 histone-like transcription factor
(CBF/NF-Y) family protein contains Pfam PF00808 :
Histone-like transcription factor (CBF/NF-Y) and
archaeal histone; similar to CAAT-box DNA binding
protein subunit B (NF-YB) (GI:22380) [Zea mays]
Length = 139
Score = 119 bits (286), Expect = 2e-27
Identities = 63/145 (43%), Positives = 91/145 (62%), Gaps = 13/145 (8%)
Query: 48 LREQDRFLPIANIAKIMKRAIPENGKIAKDARECVQECISEFISFVTSEASDRCKVEKRK 107
+ ++DR LPIAN+ ++MK+ +P N KI+K+A++ VQEC +EFISFVT EAS++C E RK
Sbjct: 1 MTDEDRLLPIANVGRLMKQILPSNAKISKEAKQTVQECATEFISFVTCEASEKCHRENRK 60
Query: 108 TINGEDVLFALNTLGFDNYVKPLRLYLTKYREIVMSPVTINKLNKTIVLYSEDGTACVSN 167
T+NG+D+ +AL+TLG DNY + +L KYRE NK S D +
Sbjct: 61 TVNGDDIWWALSTLGLDNYADAVGRHLHKYREAERERTEHNK-------GSND------S 107
Query: 168 ENEIDTQTESTILYVPTTYPKVVEE 192
NE +T T S + T + +VVE+
Sbjct: 108 GNEKETNTRSDVQNQSTKFIRVVEK 132
>At5g23090.2 68418.m02700 TATA-binding protein-associated
phosphoprotein Dr1 protein, putative (DR1) identical to
Dr1 protein homolog (SP:P49592) [Arabidopsis thaliana];
similar to TATA-binding protein-associated
phosphoprotein (Down-regulator of transcription 1) (DR1
protein (SP:Q01658) [Homo sapiens]; contains Pfam
PF00808 : Histone-like transcription factor (CBF/NF-Y)
and archaeal histone
Length = 159
Score = 72.1 bits (169), Expect = 2e-13
Identities = 33/79 (41%), Positives = 53/79 (67%)
Query: 50 EQDRFLPIANIAKIMKRAIPENGKIAKDARECVQECISEFISFVTSEASDRCKVEKRKTI 109
++D LP A + KI+K +P + ++A+DA++ + EC EFI+ V+SE++D C E ++TI
Sbjct: 11 KEDASLPKATMTKIIKEMLPPDVRVARDAQDLLIECCVEFINLVSSESNDVCNKEDKRTI 70
Query: 110 NGEDVLFALNTLGFDNYVK 128
E VL AL LGF Y++
Sbjct: 71 APEHVLKALQVLGFGEYIE 89
>At5g23090.1 68418.m02699 TATA-binding protein-associated
phosphoprotein Dr1 protein, putative (DR1) identical to
Dr1 protein homolog (SP:P49592) [Arabidopsis thaliana];
similar to TATA-binding protein-associated
phosphoprotein (Down-regulator of transcription 1) (DR1
protein (SP:Q01658) [Homo sapiens]; contains Pfam
PF00808 : Histone-like transcription factor (CBF/NF-Y)
and archaeal histone
Length = 159
Score = 72.1 bits (169), Expect = 2e-13
Identities = 33/79 (41%), Positives = 53/79 (67%)
Query: 50 EQDRFLPIANIAKIMKRAIPENGKIAKDARECVQECISEFISFVTSEASDRCKVEKRKTI 109
++D LP A + KI+K +P + ++A+DA++ + EC EFI+ V+SE++D C E ++TI
Sbjct: 11 KEDASLPKATMTKIIKEMLPPDVRVARDAQDLLIECCVEFINLVSSESNDVCNKEDKRTI 70
Query: 110 NGEDVLFALNTLGFDNYVK 128
E VL AL LGF Y++
Sbjct: 71 APEHVLKALQVLGFGEYIE 89
>At5g08190.1 68418.m00957 TATA-binding protein-associated
phosphoprotein Dr1 protein, putative similar to Dr1
protein homolog (SP:P49592) [Arabidopsis thaliana];
similar to TATA-binding protein-associated
phosphoprotein (Down-regulator of transcription 1) (DR1
protein) (SP:Q01658) [Homo sapiens]; contains Pfam
PF00808 : Histone-like transcription factor (CBF/NF-Y)
and archaeal histone
Length = 163
Score = 71.3 bits (167), Expect = 4e-13
Identities = 37/115 (32%), Positives = 66/115 (57%), Gaps = 1/115 (0%)
Query: 50 EQDRFLPIANIAKIMKRAIPENGKIAKDARECVQECISEFISFVTSEASDRCKVEKRKTI 109
++D LP A + KI+K +P + ++A+DA++ + EC EFI+ ++SE+++ C E ++TI
Sbjct: 11 KEDASLPKATMTKIIKEMLPADVRVARDAQDLLIECCVEFINLISSESNEVCNKEDKRTI 70
Query: 110 NGEDVLFALNTLGFDNYVKPLRLYLTKYR-EIVMSPVTINKLNKTIVLYSEDGTA 163
E VL AL LGF YV+ + +++ E + K+N + E+ A
Sbjct: 71 APEHVLKALQVLGFGEYVEEVYAAYEQHKYETMQDSQRSVKMNSGAEMTEEEAAA 125
>At5g23090.3 68418.m02701 TATA-binding protein-associated
phosphoprotein Dr1 protein, putative (DR1) identical to
Dr1 protein homolog (SP:P49592) [Arabidopsis thaliana];
similar to TATA-binding protein-associated
phosphoprotein (Down-regulator of transcription 1) (DR1
protein (SP:Q01658) [Homo sapiens]; contains Pfam
PF00808 : Histone-like transcription factor (CBF/NF-Y)
and archaeal histone
Length = 146
Score = 60.1 bits (139), Expect = 1e-09
Identities = 26/62 (41%), Positives = 44/62 (70%)
Query: 67 AIPENGKIAKDARECVQECISEFISFVTSEASDRCKVEKRKTINGEDVLFALNTLGFDNY 126
++P++ ++A+DA++ + EC EFI+ V+SE++D C E ++TI E VL AL LGF Y
Sbjct: 15 SLPKDVRVARDAQDLLIECCVEFINLVSSESNDVCNKEDKRTIAPEHVLKALQVLGFGEY 74
Query: 127 VK 128
++
Sbjct: 75 IE 76
>At2g27470.1 68415.m03320 CCAAT-box binding transcription factor
subunit HAP3-related contains Pfam PF00808 :
Histone-like transcription factor (CBF/NF-Y) and
archaeal histone; similar to polymerase epsilon p17
subunit (DNA polymerase epsilon subunit 3) (YB-like
protein 1) (YBL1) (NF-YB-like protein) (SP:Q9JKP7) [Mus
musculus];
Length = 275
Score = 48.4 bits (110), Expect = 3e-06
Identities = 25/90 (27%), Positives = 51/90 (56%), Gaps = 5/90 (5%)
Query: 55 LPIANIAKIMKRAIPE-----NGKIAKDARECVQECISEFISFVTSEASDRCKVEKRKTI 109
LP+A + +++K+ + E + I K+A E FI ++++ A+D CK +R+T+
Sbjct: 11 LPLAIVRRVVKKKLSECSPDYDVSIHKEALLAFSESARIFIHYLSATANDFCKDARRQTM 70
Query: 110 NGEDVLFALNTLGFDNYVKPLRLYLTKYRE 139
+DV AL + F +++PL+ L +++
Sbjct: 71 KADDVFKALEEMDFSEFLEPLKSSLEDFKK 100
>At5g58130.1 68418.m07273 RNA recognition motif (RRM)-containing
protein
Length = 748
Score = 29.5 bits (63), Expect = 1.6
Identities = 16/50 (32%), Positives = 24/50 (48%), Gaps = 3/50 (6%)
Query: 1 MDSDELGNDLVRLDNGFLVADDTFVVNSDDVLEDENNSDSGSKSNAPLRE 50
M D + N + D+G V DDT + D + +D N D GS + L +
Sbjct: 480 MADDTVSNSMAESDDGDNVEDDTAI---DSMCDDTANDDVGSDDSGSLAD 526
>At5g50480.1 68418.m06252 CCAAT-box binding transcription factor
Hap5a, putative GI:14577940 CCAAT-binding protein
subunit HAP5 {Hypocrea jecorina} similar to
Transcription factor GB:CAA74053 GI:2398533 from
[Arabidopsis thaliana] similarity to transcription
factor Hap5a similar to transcription factor Hap5a
[Arabidopsis thaliana](GI:6523090)
Length = 202
Score = 29.5 bits (63), Expect = 1.6
Identities = 19/64 (29%), Positives = 33/64 (51%), Gaps = 1/64 (1%)
Query: 51 QDRFLPIANIAKIMKRAIPENGKIAKDARECVQECISEFISFVTSEASDRCKVEKRKTIN 110
++R LP+A I KIMK A P+ ++ +A + FI +T + + + KR T+
Sbjct: 51 KNRQLPLARIKKIMK-ADPDVHMVSAEAPIIFAKACEMFIVDLTMRSWLKAEENKRHTLQ 109
Query: 111 GEDV 114
D+
Sbjct: 110 KSDI 113
>At1g61690.1 68414.m06958 tetratricopeptide repeat (TPR)-containing
protein contains Pfam profile PF00515: TPR Domain
Length = 1155
Score = 29.5 bits (63), Expect = 1.6
Identities = 32/134 (23%), Positives = 55/134 (41%), Gaps = 10/134 (7%)
Query: 29 DDVLEDENNSDSGSKSNAPLREQDRFLPIANIAKIMKRAIPENGKIAKDAREC-VQECIS 87
DD++ + + K N+P + + + K+ + ++ + K RE +QE +
Sbjct: 969 DDMVSTTEDPPAREKENSPSSSAPKAMSGRDRFKLQQESLSHKRQAMKLRREGKMQEAEA 1028
Query: 88 EFISFVTSEA----SDRCKVEKRKTINGED-----VLFALNTLGFDNYVKPLRLYLTKYR 138
EF T EA S K E + ED +L AL +G DN V P + T
Sbjct: 1029 EFEIAKTLEAQLEDSTSSKPEPVDDVAVEDFLDPQLLSALKAIGLDNPVNPPPVSKTDTT 1088
Query: 139 EIVMSPVTINKLNK 152
+ P + + N+
Sbjct: 1089 QAAAKPNPVKESNR 1102
>At1g53935.1 68414.m06141 hypothetical protein
Length = 144
Score = 29.5 bits (63), Expect = 1.6
Identities = 20/77 (25%), Positives = 34/77 (44%), Gaps = 1/77 (1%)
Query: 34 DENNSDSGSKSNAPLREQDRFLPIANIAKIMKRAIPENGKIA-KDARECVQECISEFISF 92
+ +SD S+ + PL E + AK + P K K + E + EF+SF
Sbjct: 26 ESGSSDEESEESKPLEESKKEEHFKKPAKTSVVSKPSGSKTTTKPSHESTKPFCQEFVSF 85
Query: 93 VTSEASDRCKVEKRKTI 109
V +E + +++ K I
Sbjct: 86 VKAENPNCFGIDEAKWI 102
>At5g64810.1 68418.m08150 WRKY family transcription factor contains
Pfam profile: PF03106 WRKY DNA -binding domain
Length = 194
Score = 29.1 bits (62), Expect = 2.1
Identities = 28/117 (23%), Positives = 54/117 (46%), Gaps = 8/117 (6%)
Query: 28 SDDVLEDENNSDSGSKSNAPLREQDRFLPIANIAKIMKRAIPENGKIAKDARECVQECIS 87
S L + +++ GSK + +E + +KI + + K K ++ V+ I+
Sbjct: 71 SATTLSKKESTNRGSKESDQTKETGHRVAFRTRSKI--DVMDDGFKWRKYGKKSVKNNIN 128
Query: 88 EFISFVTSEASDRCKVEKRKTINGEDVLFALNTL-GFDNYVKPLRLYLTKYREIVMS 143
+ + S S+ C V+KR +G+D + + T G N+ +Y Y E+V+S
Sbjct: 129 KRNYYKCS--SEGCSVKKRVERDGDDAAYVITTYEGVHNHESLSNVY---YNEMVLS 180
>At3g15600.1 68416.m01976 hypothetical protein low similarity to KED
[Nicotiana tabacum] GI:8096269; contains Pfam profile
PF03384: Drosophila protein of unknown function, DUF287
Length = 591
Score = 29.1 bits (62), Expect = 2.1
Identities = 15/77 (19%), Positives = 38/77 (49%), Gaps = 2/77 (2%)
Query: 4 DELGNDLVRLDNGFLVADDTFVVNSDDVLEDENNSDSGSKSNAPLREQDRFLPIANIAKI 63
DE+ V +G + + V DD ++ E + S + E ++ + +A+ K
Sbjct: 464 DEMDGGKVAESDGEMDGEKDKEVPEDDEMDGEKEKEVAEPSEIGMPESEKDIEVADSEK- 522
Query: 64 MKRAIPENGKIAKDARE 80
++ +P++ K+A+ +++
Sbjct: 523 -EKEVPQDAKVAEPSKK 538
>At2g33240.1 68415.m04072 myosin, putative similar to myosin
(GI:433663) [Arabidopsis thaliana]; myosin my5A
(SP:Q02440) {Gallus gallus}
Length = 1770
Score = 29.1 bits (62), Expect = 2.1
Identities = 18/58 (31%), Positives = 32/58 (55%), Gaps = 1/58 (1%)
Query: 64 MKRAIPENGKIAKDARECVQECISEFISFVTSEASDRCKVEKRKTINGEDVLFALNTL 121
+K A E G + +DA+ +++ + E S + E R ++E+ KT ED+ ALN +
Sbjct: 893 LKMAAKETGAL-QDAKTKLEKEVEELTSCLELEKQMRMELEQVKTQEVEDLRSALNDM 949
>At5g10370.1 68418.m01203 helicase domain-containing protein / IBR
domain-containing protein / zinc finger protein-related
similar to RNA-dependent ATPase/helicase Cdc28p
[Schizosaccharomyces pombe] GI:1439562; contains Pfam
profiles PF04408: Helicase associated domain (HA2),
PF00271: Helicase conserved C-terminal domain, weak hit
to PF00097: Zinc finger, C3HC4 type (RING finger),
PF01485: IBR domain
Length = 1775
Score = 28.7 bits (61), Expect = 2.8
Identities = 19/68 (27%), Positives = 31/68 (45%)
Query: 67 AIPENGKIAKDARECVQECISEFISFVTSEASDRCKVEKRKTINGEDVLFALNTLGFDNY 126
++ ENG+ K R ++E + +SF + EK+K I E L F+N
Sbjct: 192 SLMENGEGVKKVRLEIEEKSRQVVSFSSKRGLKFEVFEKKKAIEAERDLVVNRLEEFNNA 251
Query: 127 VKPLRLYL 134
+K + YL
Sbjct: 252 MKSILRYL 259
>At2g07770.1 68415.m01005 hypothetical protein low similarity to KED
[Nicotiana tabacum] GI:8096269; contains Pfam profile
PF03384: Drosophila protein of unknown function, DUF287
Length = 518
Score = 28.7 bits (61), Expect = 2.8
Identities = 15/77 (19%), Positives = 38/77 (49%), Gaps = 2/77 (2%)
Query: 4 DELGNDLVRLDNGFLVADDTFVVNSDDVLEDENNSDSGSKSNAPLREQDRFLPIANIAKI 63
DE+ V +G + + V DD ++ E + S + E ++ + +A+ K
Sbjct: 391 DEMDGGKVAESDGEMDGEKDKEVPQDDEMDGEKEKEVAEPSEIGVPESEKDIEVADSEK- 449
Query: 64 MKRAIPENGKIAKDARE 80
++ +P++ K+A+ +++
Sbjct: 450 -EKEVPQDAKVAEPSKK 465
>At1g77840.1 68414.m09070 eukaryotic translation initiation factor
5, putative / eIF-5, putative similar to SP|P55876
Eukaryotic translation initiation factor 5 (eIF-5) {Zea
mays}; contains Pfam profiles PF02020:
eIF4-gamma/eIF5/eIF2-epsilon, PF01873: Domain found in
IF2B/IF5
Length = 437
Score = 28.3 bits (60), Expect = 3.6
Identities = 20/84 (23%), Positives = 36/84 (42%)
Query: 112 EDVLFALNTLGFDNYVKPLRLYLTKYREIVMSPVTINKLNKTIVLYSEDGTACVSNENEI 171
+D++ AL FD K +TK + + + T+ + + L + GT C N NE
Sbjct: 316 QDIMDALFNALFDGVGKGFAKEVTKKKNYLAAAATMQEDGSQMHLLNSIGTFCGKNGNEE 375
Query: 172 DTQTESTILYVPTTYPKVVEEFIL 195
+ + +L + EE +L
Sbjct: 376 ALKEVALVLKALYDQDIIEEEVVL 399
>At5g43250.1 68418.m05285 transcription factor, putative similar to
heme activated protein GI:6289057 from (Arabidopsis
thaliana) GI:14577940 CCAAT-binding protein subunit HAP5
{Hypocrea jecorina} similar to Transcription factor
GB:CAA74053 GI:2398533 from [Arabidopsis thaliana]
similarity to transcription factor Hap5a similar to
transcription factor Hap5a [Arabidopsis
thaliana](GI:6523090)
Length = 130
Score = 27.9 bits (59), Expect = 4.8
Identities = 18/63 (28%), Positives = 31/63 (49%), Gaps = 1/63 (1%)
Query: 56 PIANIAKIMKRAIPENGKIAKDARECVQECISEFISFVTSEASDRCKVEKRKTINGEDVL 115
PI + KIMK N KI +A + F+ F+ +++ +KRKT+N + +
Sbjct: 13 PIGRVKKIMKLDKDIN-KINSEALHVITYSTELFLHFLAEKSAVVTAEKKRKTVNLDHLR 71
Query: 116 FAL 118
A+
Sbjct: 72 IAV 74
>At3g13870.2 68416.m01752 root hair defective 3 (RHD3) identical to
root hair defective 3 (RHD3) GI:1839188 from
[Arabidopsis thaliana] (Genes Dev (1997) 11(6), 799-811)
Length = 738
Score = 27.1 bits (57), Expect = 8.4
Identities = 12/52 (23%), Positives = 22/52 (42%)
Query: 57 IANIAKIMKRAIPENGKIAKDARECVQECISEFISFVTSEASDRCKVEKRKT 108
+ N ++A+ + A+ C Q CIS+F ++ K + KT
Sbjct: 315 LENFKNAFEKALDAGEGFSSSAKSCAQSCISKFDKGCEEAVIEQAKWDTSKT 366
>At3g13870.1 68416.m01753 root hair defective 3 (RHD3) identical to
root hair defective 3 (RHD3) GI:1839188 from
[Arabidopsis thaliana] (Genes Dev (1997) 11(6), 799-811)
Length = 802
Score = 27.1 bits (57), Expect = 8.4
Identities = 12/52 (23%), Positives = 22/52 (42%)
Query: 57 IANIAKIMKRAIPENGKIAKDARECVQECISEFISFVTSEASDRCKVEKRKT 108
+ N ++A+ + A+ C Q CIS+F ++ K + KT
Sbjct: 379 LENFKNAFEKALDAGEGFSSSAKSCAQSCISKFDKGCEEAVIEQAKWDTSKT 430
>At1g66730.1 68414.m07585 ATP dependent DNA ligase family protein
contains Pfam profile: PF01068 ATP dependent DNA ligase
domain
Length = 1417
Score = 27.1 bits (57), Expect = 8.4
Identities = 30/146 (20%), Positives = 59/146 (40%), Gaps = 11/146 (7%)
Query: 35 ENNSDSGSKSNAPLREQDRFLPIA----NIAKIMKRAIPENGKIAKDARECVQECISE-- 88
+ SGSKSN ++ + P+ + K + + + G + +EC ++
Sbjct: 573 KRGKSSGSKSNKKAKKDPKSKPVGPGQPTLFKFFNKVL-DGGSNSVSVGSETEECNTDKK 631
Query: 89 FISFVTSEASDRCKVEKRKTINGEDVL--FALNTL--GFDNYVKPLRLYLTKYREIVMSP 144
+ SEA + +NG + L +A + + + + L +Y +K REI
Sbjct: 632 MVHIDASEAYKEVTDQFIDIVNGSESLRDYAASIIDEAKGDISRALNIYYSKPREIPGDH 691
Query: 145 VTINKLNKTIVLYSEDGTACVSNENE 170
L+ + Y + AC S E++
Sbjct: 692 AGERGLSSKTIQYPKCSEACSSQEDK 717
>At1g65790.1 68414.m07466 S-receptor protein kinase, putative
similar to similar to PIR|T05180|T05180 S-receptor
kinase ARK3 precursor - [Arabidopsis thaliana]
Length = 843
Score = 27.1 bits (57), Expect = 8.4
Identities = 21/76 (27%), Positives = 32/76 (42%), Gaps = 3/76 (3%)
Query: 94 TSEASDRCKVEKRKTINGEDVLFALNTLGFDNYVKPLRLYLTKYREIVMSPVTINKLNKT 153
T A++ + KTI +F L GF N R YL + +I+ + N+
Sbjct: 29 TLSATESLTISSNKTIISPSQIFEL---GFFNPASSSRWYLGIWYKIIPIRTYVWVANRD 85
Query: 154 IVLYSEDGTACVSNEN 169
L S +GT +S N
Sbjct: 86 NPLSSSNGTLKISGNN 101
>At1g17440.2 68414.m02133 transcription initiation factor IID
(TFIID) subunit A family protein similar to SP|Q16514
Transcription initiation factor TFIID 20/15 kDa subunits
(TAFII-20/TAFII-15) {Homo sapiens}; contains Pfam
profile PF03847: Transcription initiation factor TFIID
subunit A
Length = 683
Score = 27.1 bits (57), Expect = 8.4
Identities = 14/48 (29%), Positives = 22/48 (45%)
Query: 71 NGKIAKDARECVQECISEFISFVTSEASDRCKVEKRKTINGEDVLFAL 118
+ K+ D + + E +FI VTS A K K + +D+L L
Sbjct: 543 HAKLDPDVEDLLLEVADDFIDSVTSFACSLAKHRKSSVLEPKDILLHL 590
>At1g17440.1 68414.m02132 transcription initiation factor IID
(TFIID) subunit A family protein similar to SP|Q16514
Transcription initiation factor TFIID 20/15 kDa subunits
(TAFII-20/TAFII-15) {Homo sapiens}; contains Pfam
profile PF03847: Transcription initiation factor TFIID
subunit A
Length = 683
Score = 27.1 bits (57), Expect = 8.4
Identities = 14/48 (29%), Positives = 22/48 (45%)
Query: 71 NGKIAKDARECVQECISEFISFVTSEASDRCKVEKRKTINGEDVLFAL 118
+ K+ D + + E +FI VTS A K K + +D+L L
Sbjct: 543 HAKLDPDVEDLLLEVADDFIDSVTSFACSLAKHRKSSVLEPKDILLHL 590
Database: arabidopsis
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.315 0.133 0.368
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,743,213
Number of Sequences: 28952
Number of extensions: 201098
Number of successful extensions: 526
Number of sequences better than 10.0: 35
Number of HSP's better than 10.0 without gapping: 24
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 500
Number of HSP's gapped (non-prelim): 37
length of query: 196
length of database: 12,070,560
effective HSP length: 77
effective length of query: 119
effective length of database: 9,841,256
effective search space: 1171109464
effective search space used: 1171109464
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (22.0 bits)
S2: 57 (27.1 bits)
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