Silkworm BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000218-TA|BGIBMGA000218-PA|IPR003958|Transcription
factor CBF/NF-Y/archaeal histone, IPR009072|Histone-fold
         (145 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X91509-1|CAA62809.1|  103|Apis mellifera histone H4 protein.           27   0.079
AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    26   0.18 
AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.      23   1.3  
AF388659-3|AAK71993.1|  548|Apis mellifera 1D-myo-inositol-trisp...    23   1.3  
AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    22   3.0  
DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor pr...    21   3.9  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    21   3.9  
DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase ...    20   9.1  
DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase ...    20   9.1  

>X91509-1|CAA62809.1|  103|Apis mellifera histone H4 protein.
          Length = 103

 Score = 27.1 bits (57), Expect = 0.079
 Identities = 8/28 (28%), Positives = 18/28 (64%)

Query: 99  EMFLETIVKETYAFTSSNKRKVISKKDL 126
           ++FLE ++++   +T   KRK ++  D+
Sbjct: 60  KVFLENVIRDAVTYTEHTKRKTVTAMDV 87


>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
           methyltransferase protein.
          Length = 683

 Score = 25.8 bits (54), Expect = 0.18
 Identities = 13/77 (16%), Positives = 38/77 (49%), Gaps = 2/77 (2%)

Query: 7   HEDVDISDITEHSESYLENEHLKFALTEATEADNNKLEFELNSEEQVHEKKQKTEVIRST 66
           H+ +D   I     +Y  N++  ++ +  + + N+ + F+ N EE+    ++ ++ + + 
Sbjct: 123 HQKLDQKFIFPQENNY--NDNYFYSKSNGSNSSNSDVLFKQNKEEEQTINRKNSDYLDNQ 180

Query: 67  KLPIARIKNIMKMDPDV 83
           ++ +   +N    D D+
Sbjct: 181 EVSMENTENKSCTDSDI 197


>AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.
          Length = 366

 Score = 23.0 bits (47), Expect = 1.3
 Identities = 19/73 (26%), Positives = 37/73 (50%), Gaps = 3/73 (4%)

Query: 3   EEECHEDVDISDITEHSESYLENEHLKFALTEATEADNNKLEFELNSEEQVHEKKQKTEV 62
           EE+ ++ V+IS +TE S S  ++  L+       +  ++ +E E  SE + +    KT++
Sbjct: 184 EEQRYKQVEISQMTEPSSS-TKSYVLEGPRNGKRKRKSSTIENE--SETESNASSTKTKM 240

Query: 63  IRSTKLPIARIKN 75
            R +      I+N
Sbjct: 241 RRKSGATFEEIQN 253


>AF388659-3|AAK71993.1|  548|Apis mellifera
          1D-myo-inositol-trisphosphate 3-kinaseisoform C
          protein.
          Length = 548

 Score = 23.0 bits (47), Expect = 1.3
 Identities = 7/23 (30%), Positives = 18/23 (78%)

Query: 41 NKLEFELNSEEQVHEKKQKTEVI 63
          N+LE E ++ ++V++KK++  ++
Sbjct: 76 NQLEIESDNSKEVNDKKEENFIV 98


>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 21.8 bits (44), Expect = 3.0
 Identities = 11/29 (37%), Positives = 15/29 (51%)

Query: 80  DPDVNIVSSDAVFLVTKATEMFLETIVKE 108
           D D   +    V    K+TE FL T+V+E
Sbjct: 437 DEDETPLDPVVVISNDKSTEFFLATVVEE 465


>DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor
           protein.
          Length = 459

 Score = 21.4 bits (43), Expect = 3.9
 Identities = 11/28 (39%), Positives = 15/28 (53%)

Query: 28  LKFALTEATEADNNKLEFELNSEEQVHE 55
           L FA+  AT  D N +E+  NS+    E
Sbjct: 162 LIFAMPFATYVDINYVEYPQNSKRNSEE 189


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 21.4 bits (43), Expect = 3.9
 Identities = 12/49 (24%), Positives = 24/49 (48%)

Query: 36  TEADNNKLEFELNSEEQVHEKKQKTEVIRSTKLPIARIKNIMKMDPDVN 84
           TE+  N+   ++     +  ++ ++ +  S KL  +RIK   K+  D N
Sbjct: 640 TESLLNRHNEDMEKLMMLKHREFRSSIKASDKLKDSRIKTTEKLSTDPN 688


>DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase
           isoform B protein.
          Length = 931

 Score = 20.2 bits (40), Expect = 9.1
 Identities = 11/36 (30%), Positives = 18/36 (50%)

Query: 21  SYLENEHLKFALTEATEADNNKLEFELNSEEQVHEK 56
           S LEN  L     E TE++ ++L+  L + +    K
Sbjct: 186 SSLENISLNGIDPELTESEQHRLQNRLYTNDSTSSK 221


>DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase
           isoform A protein.
          Length = 969

 Score = 20.2 bits (40), Expect = 9.1
 Identities = 11/36 (30%), Positives = 18/36 (50%)

Query: 21  SYLENEHLKFALTEATEADNNKLEFELNSEEQVHEK 56
           S LEN  L     E TE++ ++L+  L + +    K
Sbjct: 224 SSLENISLNGIDPELTESEQHRLQNRLYTNDSTSSK 259


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.313    0.128    0.342 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 35,707
Number of Sequences: 429
Number of extensions: 1412
Number of successful extensions: 9
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of query: 145
length of database: 140,377
effective HSP length: 52
effective length of query: 93
effective length of database: 118,069
effective search space: 10980417
effective search space used: 10980417
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.0 bits)
S2: 40 (20.2 bits)