Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000218-TA|BGIBMGA000218-PA|IPR003958|Transcription
factor CBF/NF-Y/archaeal histone, IPR009072|Histone-fold
(145 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC3B8.02 |php5||CCAAT-binding factor complex subunit Php5|Schi... 55 4e-09
SPAC17G8.03c |dpb3||DNA polymerase epsilon subunit Dpb3|Schizosa... 50 1e-07
SPBC19G7.16 |iws1||transcription elongation factor complex subun... 30 0.16
SPAC9.03c |brr2|spp41|U5 snRNP complex subunit Brr2 |Schizosacch... 29 0.28
SPBC8D2.03c |hhf2|ams3, h4.2|histone H4 h4.2|Schizosaccharomyces... 28 0.65
SPBC1105.12 |hhf3|h4.3|histone H4 h4.3|Schizosaccharomyces pombe... 28 0.65
SPAC22F8.09 |rrp16|nop53|rRNA processing protein Rrp16 |Schizosa... 28 0.65
SPAC1834.03c |hhf1|h4.1|histone H4 h4.1|Schizosaccharomyces pomb... 28 0.65
SPAC17H9.16 |tom22||mitochondrial TOM complex subunit Tom22|Schi... 27 0.86
SPAC56F8.05c |mug64||conserved fungal protein|Schizosaccharomyce... 27 0.86
SPCC74.06 |mak3|phk2|histidine kinase Mak3 |Schizosaccharomyces ... 27 1.1
SPAC167.05 ||SPAC57A7.01|Usp |Schizosaccharomyces pombe|chr 1|||... 27 1.1
SPAC1A6.01c ||SPAC23C4.20c|human thyroid receptor interacting pr... 26 2.0
SPBC17A3.10 |pas4||peroxisomal ubiquitin-protein ligase E3 |Schi... 26 2.0
SPBC660.08 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 26 2.0
SPBC14C8.14c |pol5||DNA polymerase phi|Schizosaccharomyces pombe... 26 2.6
SPBC887.03c |noc3||Noc2p-Noc3p complex subunit Noc3 |Schizosacch... 26 2.6
SPCC622.13c |||conserved eukaryotic protein|Schizosaccharomyces ... 25 3.5
SPAC1565.08 |cdc48|SPAC6F12.01|AAA family ATPase Cdc48|Schizosac... 25 3.5
SPAC27D7.12c |but1|SPAC27D7.12, mug107|neddylation pathway prote... 25 4.6
SPCC1393.08 |||transcription factor, zf-GATA type |Schizosacchar... 25 4.6
SPBC354.08c |||DUF221 family protein|Schizosaccharomyces pombe|c... 25 6.1
SPAC22F3.02 |atf31||transcription factor Atf31|Schizosaccharomyc... 25 6.1
SPCC18.14c |rpp0||60S acidic ribosomal protein Rpp0 |Schizosacch... 25 6.1
SPCC16C4.14c |sfc4||transcription factor TFIIIC complex subunit ... 25 6.1
SPBC30D10.02 |||transcription corepressor |Schizosaccharomyces p... 25 6.1
SPAC4A8.16c |tif33|SPAC823.01c|translation initiation factor eIF... 24 8.0
SPBC32F12.08c |duo1||DASH complex subunit Duo1 |Schizosaccharomy... 24 8.0
>SPBC3B8.02 |php5||CCAAT-binding factor complex subunit
Php5|Schizosaccharomyces pombe|chr 2|||Manual
Length = 415
Score = 55.2 bits (127), Expect = 4e-09
Identities = 24/81 (29%), Positives = 46/81 (56%), Gaps = 2/81 (2%)
Query: 61 EVIRSTKLPIARIKNIMKMDPDVN--IVSSDAVFLVTKATEMFLETIVKETYAFTSSNKR 118
+ +++ LP+ARIK +MK D DV ++S++A FL K +E+F+ + + N+R
Sbjct: 102 QAVKTLHLPLARIKKVMKTDDDVKNKMISAEAPFLFAKGSEIFIAELTMRAWLHAKKNQR 161
Query: 119 KVISKKDLELVIDKVDCLCFL 139
+ + + D+ + K + FL
Sbjct: 162 RTLQRSDIANAVSKSEMYDFL 182
>SPAC17G8.03c |dpb3||DNA polymerase epsilon subunit
Dpb3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 199
Score = 50.4 bits (115), Expect = 1e-07
Identities = 25/90 (27%), Positives = 50/90 (55%)
Query: 55 EKKQKTEVIRSTKLPIARIKNIMKMDPDVNIVSSDAVFLVTKATEMFLETIVKETYAFTS 114
E K ++ P+ARIK IM+ D DV V+ +++KA E+F+++I++E+ T
Sbjct: 11 ETKPNPATYWKSRFPVARIKKIMQADQDVGKVAQVTPVIMSKALELFMQSIIQESCKQTR 70
Query: 115 SNKRKVISKKDLELVIDKVDCLCFLEGAMD 144
++ K ++ L+ + V+ FL+ ++
Sbjct: 71 LHQAKRVTVSHLKHAVQSVEQFDFLQDIVE 100
>SPBC19G7.16 |iws1||transcription elongation factor complex
subunit Iws1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 428
Score = 29.9 bits (64), Expect = 0.16
Identities = 14/37 (37%), Positives = 23/37 (62%), Gaps = 2/37 (5%)
Query: 10 VDISDITEHSESYLEN--EHLKFALTEATEADNNKLE 44
VD++D+T H + L+N E L F+ E ++ D N+ E
Sbjct: 31 VDVADVTTHVDEDLDNKEEALDFSEDELSDLDENQFE 67
>SPAC9.03c |brr2|spp41|U5 snRNP complex subunit Brr2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2176
Score = 29.1 bits (62), Expect = 0.28
Identities = 14/69 (20%), Positives = 32/69 (46%), Gaps = 3/69 (4%)
Query: 2 SEEECHEDVDISDITEHSES---YLENEHLKFALTEATEADNNKLEFELNSEEQVHEKKQ 58
++E H+ DI D+ + + +++N HL + + ++FE+ E VH
Sbjct: 2011 NKEGVHDVFDIIDLDDEKRTELLHMDNAHLAKCAEFINKYPDIDIDFEIEDSEDVHANSP 2070
Query: 59 KTEVIRSTK 67
+++ T+
Sbjct: 2071 SVLIVQLTR 2079
>SPBC8D2.03c |hhf2|ams3, h4.2|histone H4 h4.2|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 103
Score = 27.9 bits (59), Expect = 0.65
Identities = 12/40 (30%), Positives = 24/40 (60%), Gaps = 1/40 (2%)
Query: 88 SDAVFLVTKAT-EMFLETIVKETYAFTSSNKRKVISKKDL 126
S V+ T+A ++FLE ++++ +T KRK ++ D+
Sbjct: 48 SALVYEETRAVLKLFLENVIRDAVTYTEHAKRKTVTSLDV 87
>SPBC1105.12 |hhf3|h4.3|histone H4 h4.3|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 103
Score = 27.9 bits (59), Expect = 0.65
Identities = 12/40 (30%), Positives = 24/40 (60%), Gaps = 1/40 (2%)
Query: 88 SDAVFLVTKAT-EMFLETIVKETYAFTSSNKRKVISKKDL 126
S V+ T+A ++FLE ++++ +T KRK ++ D+
Sbjct: 48 SALVYEETRAVLKLFLENVIRDAVTYTEHAKRKTVTSLDV 87
>SPAC22F8.09 |rrp16|nop53|rRNA processing protein Rrp16
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 419
Score = 27.9 bits (59), Expect = 0.65
Identities = 17/80 (21%), Positives = 37/80 (46%), Gaps = 2/80 (2%)
Query: 1 MSEEECHEDVDISDITEHSESYLENEHLKFALTEATEADNNKLEFELNSEEQVHEKKQKT 60
+S+++ + +D D +EH ++ E T + NK+ E ++ E+K+
Sbjct: 241 VSDQDVNHSIDSDDQSEHEQA--ETPIPSSKNKRKTRSQRNKIRQRREEELRLLEQKKNE 298
Query: 61 EVIRSTKLPIARIKNIMKMD 80
E++R+ A K + + D
Sbjct: 299 ELLRTIDKAPAISKKLQQKD 318
>SPAC1834.03c |hhf1|h4.1|histone H4 h4.1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 103
Score = 27.9 bits (59), Expect = 0.65
Identities = 12/40 (30%), Positives = 24/40 (60%), Gaps = 1/40 (2%)
Query: 88 SDAVFLVTKAT-EMFLETIVKETYAFTSSNKRKVISKKDL 126
S V+ T+A ++FLE ++++ +T KRK ++ D+
Sbjct: 48 SALVYEETRAVLKLFLENVIRDAVTYTEHAKRKTVTSLDV 87
>SPAC17H9.16 |tom22||mitochondrial TOM complex subunit
Tom22|Schizosaccharomyces pombe|chr 1|||Manual
Length = 144
Score = 27.5 bits (58), Expect = 0.86
Identities = 11/49 (22%), Positives = 28/49 (57%)
Query: 8 EDVDISDITEHSESYLENEHLKFALTEATEADNNKLEFELNSEEQVHEK 56
E VD +++ ++ +E + +A + E+D+++ +FE EE + ++
Sbjct: 6 EVVDETEVQNEQQTVIEKDQYIYAQEDVEESDSDESDFEGLEEETIIDR 54
>SPAC56F8.05c |mug64||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 295
Score = 27.5 bits (58), Expect = 0.86
Identities = 20/64 (31%), Positives = 28/64 (43%), Gaps = 6/64 (9%)
Query: 26 EHLKFALTEATEADNNKLEFELNSEEQVHEKKQKTEVIRSTKLPIARIKNIMKMDPDVNI 85
EH K A+ A + N +E EQ+ K T+++RS IKN +K D
Sbjct: 235 EHCKSAVRSAEDELNGAIEHAKILYEQILNKDYNTDLLRSI------IKNQLKFHQDAAA 288
Query: 86 VSSD 89
SD
Sbjct: 289 ALSD 292
>SPCC74.06 |mak3|phk2|histidine kinase Mak3 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 2344
Score = 27.1 bits (57), Expect = 1.1
Identities = 18/73 (24%), Positives = 32/73 (43%), Gaps = 3/73 (4%)
Query: 67 KLPIARIKNIMKMDPDVNIVSS--DAVFLVTKATEMFLETIVKETYAFTSSNKRKVISKK 124
+ P + ++ + D N+ S D V + EM L ++ + F+ KV +
Sbjct: 1798 RTPFSGFYGMLSLLDDTNLDSEQRDIVSAARISCEMLLR-VINDLLNFSKLEAGKVTLES 1856
Query: 125 DLELVIDKVDCLC 137
DLE ++ V C C
Sbjct: 1857 DLEFSLESVVCDC 1869
>SPAC167.05 ||SPAC57A7.01|Usp |Schizosaccharomyces pombe|chr
1|||Manual
Length = 601
Score = 27.1 bits (57), Expect = 1.1
Identities = 15/68 (22%), Positives = 34/68 (50%)
Query: 22 YLENEHLKFALTEATEADNNKLEFELNSEEQVHEKKQKTEVIRSTKLPIARIKNIMKMDP 81
+LE HL +L+ + ++++ L +S++ ++ K+E S + I K I K
Sbjct: 256 HLEPLHLNRSLSSSPSSEDSDLSLSSDSDDDEKKQPSKSEKTSSMSVSIKPPKIIRKGSK 315
Query: 82 DVNIVSSD 89
+ N ++ +
Sbjct: 316 EQNRIAKE 323
>SPAC1A6.01c ||SPAC23C4.20c|human thyroid receptor interacting
protein homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 455
Score = 26.2 bits (55), Expect = 2.0
Identities = 14/42 (33%), Positives = 22/42 (52%)
Query: 29 KFALTEATEADNNKLEFELNSEEQVHEKKQKTEVIRSTKLPI 70
K A +E+++ D ++L+ E Q H K VIR+ PI
Sbjct: 377 KEASSESSDEDQDELDNLTKVEGQSHSHNPKAPVIRNLPRPI 418
>SPBC17A3.10 |pas4||peroxisomal ubiquitin-protein ligase E3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 306
Score = 26.2 bits (55), Expect = 2.0
Identities = 12/34 (35%), Positives = 16/34 (47%)
Query: 12 ISDITEHSESYLENEHLKFALTEATEADNNKLEF 45
I+ I +HS SY + + E D NKL F
Sbjct: 215 IASILQHSNSYFDQHTISSITDERDLEDKNKLPF 248
>SPBC660.08 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 395
Score = 26.2 bits (55), Expect = 2.0
Identities = 22/73 (30%), Positives = 38/73 (52%), Gaps = 6/73 (8%)
Query: 48 NSEEQVHEKKQKTEV-IR--STKLPIARIKNIMKMD---PDVNIVSSDAVFLVTKATEMF 101
+SE+ +++ K E+ ++ ST +A +I+ MD P +I SSD FL+ + +
Sbjct: 99 DSEDDLYQMYSKFEMQVKKLSTNYGLAVAFSIVPMDDDQPSPSIFSSDESFLIVEGDDFS 158
Query: 102 LETIVKETYAFTS 114
L V+E TS
Sbjct: 159 LGNSVEEDANATS 171
>SPBC14C8.14c |pol5||DNA polymerase phi|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 959
Score = 25.8 bits (54), Expect = 2.6
Identities = 17/63 (26%), Positives = 34/63 (53%), Gaps = 7/63 (11%)
Query: 3 EEECHEDVDISDITEHSESYL-------ENEHLKFALTEATEADNNKLEFELNSEEQVHE 55
+E+ E++D +I E S+ + +NE L+ L + E + K++ E +SEE++
Sbjct: 690 DEDDFEEIDTDEIEEQSDWEMISNQDASDNEELERKLDKVLEDADAKVKDEESSEEELMN 749
Query: 56 KKQ 58
+Q
Sbjct: 750 DEQ 752
>SPBC887.03c |noc3||Noc2p-Noc3p complex subunit Noc3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 747
Score = 25.8 bits (54), Expect = 2.6
Identities = 14/64 (21%), Positives = 31/64 (48%), Gaps = 1/64 (1%)
Query: 2 SEEECHEDVDISDITEHSESYLENEHLKFALTEATEADNNKLEFELNSEEQVHEKKQKTE 61
SE E ++D SDI + + LE + + + + N+K + +++ + E +
Sbjct: 182 SESEASLEID-SDIKDEKQKSLEEQKIAPEIPVKQQIKNDKEALGIQAQQLLEEPVENLH 240
Query: 62 VIRS 65
+IR+
Sbjct: 241 LIRN 244
>SPCC622.13c |||conserved eukaryotic protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1098
Score = 25.4 bits (53), Expect = 3.5
Identities = 28/103 (27%), Positives = 45/103 (43%), Gaps = 8/103 (7%)
Query: 37 EADNNKLEFELNSEEQVH-EKKQKTEVIRSTKLPIARIKNIMKMDPDVNIVSSDAVFLVT 95
++++ KL S E +H E E+ R+T+ I P+V V L++
Sbjct: 439 DSNSQKLLTSSTSNEYIHGEFFGGNEMERTTQ----EIVTSFAKAPNVKYVMQS---LLS 491
Query: 96 KATEMFLETIVKETYAFTSSNKRKVISKKDLELVIDKVDCLCF 138
KAT E V+ +AF K V + LE+ ID ++ F
Sbjct: 492 KATSATNENSVRAFWAFMVLLKSDVETVDSLEMYIDSLEQYSF 534
>SPAC1565.08 |cdc48|SPAC6F12.01|AAA family ATPase
Cdc48|Schizosaccharomyces pombe|chr 1|||Manual
Length = 815
Score = 25.4 bits (53), Expect = 3.5
Identities = 12/48 (25%), Positives = 26/48 (54%)
Query: 97 ATEMFLETIVKETYAFTSSNKRKVISKKDLELVIDKVDCLCFLEGAMD 144
A ++ LE I ET+ + S+ + S+ ++ + +K+D + E +D
Sbjct: 411 ADDVDLEQIAAETHGYVGSDLASLCSEAAMQQIREKMDMIDLDEDEID 458
>SPAC27D7.12c |but1|SPAC27D7.12, mug107|neddylation pathway
protein But1 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 243
Score = 25.0 bits (52), Expect = 4.6
Identities = 12/31 (38%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
Query: 37 EADNNKLEFELNSEEQVHEKKQKTEVIRSTK 67
E D N +F +++ + VHE K T ++STK
Sbjct: 2 EIDQNLFQFPISTRDAVHE-KNCTLRVKSTK 31
>SPCC1393.08 |||transcription factor, zf-GATA type
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 557
Score = 25.0 bits (52), Expect = 4.6
Identities = 12/66 (18%), Positives = 33/66 (50%)
Query: 16 TEHSESYLENEHLKFALTEATEADNNKLEFELNSEEQVHEKKQKTEVIRSTKLPIARIKN 75
TE+++ N +++L ++ + DN + +L S + K+ ++ ++ + IA + +
Sbjct: 93 TENNQKLQTNPSARWSLLDSMDFDNQRQCSDLESAQLGDSGLLKSTILSNSHIDIAALSS 152
Query: 76 IMKMDP 81
+P
Sbjct: 153 SKTSEP 158
>SPBC354.08c |||DUF221 family protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 865
Score = 24.6 bits (51), Expect = 6.1
Identities = 14/55 (25%), Positives = 25/55 (45%), Gaps = 1/55 (1%)
Query: 5 ECHEDVDIS-DITEHSESYLENEHLKFALTEATEADNNKLEFELNSEEQVHEKKQ 58
E H D + D + SE +L E + + DN E++ ++QV + K+
Sbjct: 747 ETHNKFDFATDSDDASEKHLRGEEEPLENVDFVDIDNVDTAKEVHDQQQVQQLKK 801
>SPAC22F3.02 |atf31||transcription factor Atf31|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 209
Score = 24.6 bits (51), Expect = 6.1
Identities = 13/38 (34%), Positives = 20/38 (52%)
Query: 101 FLETIVKETYAFTSSNKRKVISKKDLELVIDKVDCLCF 138
+L+T+ + +TS NK + S DL I K+ L F
Sbjct: 145 YLQTLQDQVNYYTSENKELLQSANDLREEIIKLRTLVF 182
>SPCC18.14c |rpp0||60S acidic ribosomal protein Rpp0
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 312
Score = 24.6 bits (51), Expect = 6.1
Identities = 14/52 (26%), Positives = 27/52 (51%)
Query: 59 KTEVIRSTKLPIARIKNIMKMDPDVNIVSSDAVFLVTKATEMFLETIVKETY 110
KT ++ +P + +++ DV++VS DA ++AT + + I TY
Sbjct: 132 KTSFFQALGIPTKITRGTIEITSDVHLVSKDAKVGPSEATLLNMLNISPFTY 183
>SPCC16C4.14c |sfc4||transcription factor TFIIIC complex subunit
Sfc4|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1006
Score = 24.6 bits (51), Expect = 6.1
Identities = 13/38 (34%), Positives = 20/38 (52%)
Query: 37 EADNNKLEFELNSEEQVHEKKQKTEVIRSTKLPIARIK 74
+ D + EF SEE +++ + TKL IAR+K
Sbjct: 371 DVDERRREFPNASEEHTNKEAYLLPHLFRTKLGIARLK 408
>SPBC30D10.02 |||transcription corepressor |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 161
Score = 24.6 bits (51), Expect = 6.1
Identities = 19/81 (23%), Positives = 36/81 (44%), Gaps = 4/81 (4%)
Query: 2 SEEECHEDVDISDITEHSESYLENEHLKFALTEATEADNNKLEFELNSEEQVHEKKQ--- 58
+ E C ++ + EH LEN K + EA E E + N E++ + +Q
Sbjct: 54 ANEICEKEAKKTIAAEHIIKALENLEFKEYIAEALEVAAEHKEQQKNREKKSSKFEQSGV 113
Query: 59 -KTEVIRSTKLPIARIKNIMK 78
+ E++R + ++R + K
Sbjct: 114 SRDELLRQQEELLSRARERFK 134
>SPAC4A8.16c |tif33|SPAC823.01c|translation initiation factor
eIF3c|Schizosaccharomyces pombe|chr 1|||Manual
Length = 918
Score = 24.2 bits (50), Expect = 8.0
Identities = 17/59 (28%), Positives = 29/59 (49%), Gaps = 3/59 (5%)
Query: 3 EEECHEDVDISDITEHSESYLENEHLKFALTEATEADNNKLEFELNSEEQVHEKKQKTE 61
EEE E + S++++ SES E+E E +E++ E E + +K +K E
Sbjct: 90 EEEETESEEDSEVSDESESESESES---ESEEESESEEESDESERSGPSSFLKKPEKEE 145
>SPBC32F12.08c |duo1||DASH complex subunit Duo1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 166
Score = 24.2 bits (50), Expect = 8.0
Identities = 17/58 (29%), Positives = 25/58 (43%), Gaps = 4/58 (6%)
Query: 26 EHLKFALTEATEADNNKLEFELNSEEQVHEKKQKTEVIRSTKLPIARIKNIMKMDPDV 83
+H K +A E K+E + E E++QK E I K R+ + DP V
Sbjct: 83 QHQKMLQIQAEE--QRKIELQQEQERLEQERRQKEEAIALQKQQQQRL--LRSKDPKV 136
Database: spombe
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.313 0.128 0.342
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 629,145
Number of Sequences: 5004
Number of extensions: 24172
Number of successful extensions: 100
Number of sequences better than 10.0: 28
Number of HSP's better than 10.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 81
Number of HSP's gapped (non-prelim): 28
length of query: 145
length of database: 2,362,478
effective HSP length: 67
effective length of query: 78
effective length of database: 2,027,210
effective search space: 158122380
effective search space used: 158122380
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
S2: 50 (24.2 bits)
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