GeneModel BLAST Result against mosquito

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000218-TA|BGIBMGA000218-PA|IPR003958|Transcription
factor CBF/NF-Y/archaeal histone, IPR009072|Histone-fold
         (145 letters)

Database: mosquito 
           2123 sequences; 516,269 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Y09953-1|CAA71084.1|   91|Anopheles gambiae histone H4 protein.        28   0.14 
X85217-1|CAA59483.1| 1231|Anopheles gambiae Anlar protein.             23   3.0  
AJ535206-1|CAD59406.1| 1376|Anopheles gambiae SMC4 protein protein.    23   3.0  
AJ297931-1|CAC35451.1|  166|Anopheles gambiae hypothetical prote...    22   9.2  

>Y09953-1|CAA71084.1|   91|Anopheles gambiae histone H4 protein.
          Length = 91

 Score = 27.9 bits (59), Expect = 0.14
 Identities = 9/28 (32%), Positives = 19/28 (67%)

Query: 99  EMFLETIVKETYAFTSSNKRKVISKKDL 126
           ++FLE ++++  A+T   KRK ++  D+
Sbjct: 60  KVFLENVIRDAVAYTEHAKRKTVTAMDV 87


>X85217-1|CAA59483.1| 1231|Anopheles gambiae Anlar protein.
          Length = 1231

 Score = 23.4 bits (48), Expect = 3.0
 Identities = 8/25 (32%), Positives = 15/25 (60%)

Query: 7   HEDVDISDITEHSESYLENEHLKFA 31
           H  + I+++  H E    N++LKF+
Sbjct: 653 HPPISIAELPNHVEPLKANDNLKFS 677


>AJ535206-1|CAD59406.1| 1376|Anopheles gambiae SMC4 protein protein.
          Length = 1376

 Score = 23.4 bits (48), Expect = 3.0
 Identities = 26/130 (20%), Positives = 54/130 (41%), Gaps = 5/130 (3%)

Query: 3   EEECHEDVDISDITEHSESYLENEHLKFALTEATEADNNKLEFELNSEEQVHEKKQKTEV 62
           +EE  +  ++    E  ES L+N   KFA  +A     N  E    + EQ+  ++++  +
Sbjct: 358 KEEIKQYDELVSAKESKESTLKNSLDKFAKVQANMRATN--ERRKKTLEQIAAEEKR--L 413

Query: 63  IRSTKLPIARIKNIMKMDPDVNIVSSDAVFLVTKATEMFLETIVKETYAFTSSNKRKVIS 122
           +    +P    K I + +  +  ++     +  K T   L T+  ET       ++    
Sbjct: 414 LELQDVPKKNKKEIEESEAKIESLTRQKTEVEAKLTAN-LATLKDETKVLLEEKEKLQTE 472

Query: 123 KKDLELVIDK 132
             +L+  +D+
Sbjct: 473 LIELKRAVDE 482


>AJ297931-1|CAC35451.1|  166|Anopheles gambiae hypothetical protein
           protein.
          Length = 166

 Score = 21.8 bits (44), Expect = 9.2
 Identities = 13/58 (22%), Positives = 27/58 (46%), Gaps = 1/58 (1%)

Query: 20  ESYLENEHLKFALTEATEADNNKLEFELNSEEQVHEKKQKTEVIRSTKLPIARIKNIM 77
           E +LE E  + A  +  EAD ++ E E    +++ E +   E +   +  +  +K  +
Sbjct: 77  EEHLEEEQEEEAEADEEEADESESE-ESEESDELEEARLVAEELEERQQELDYLKRYL 133


  Database: mosquito
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 516,269
  Number of sequences in database:  2123
  
Lambda     K      H
   0.313    0.128    0.342 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 126,802
Number of Sequences: 2123
Number of extensions: 4072
Number of successful extensions: 6
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 4
Number of HSP's gapped (non-prelim): 4
length of query: 145
length of database: 516,269
effective HSP length: 58
effective length of query: 87
effective length of database: 393,135
effective search space: 34202745
effective search space used: 34202745
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
S2: 44 (21.8 bits)