Silkworm BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000217-TA|BGIBMGA000217-PA|IPR013753|Ras
         (275 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    23   3.0  
DQ325105-1|ABD14119.1|  180|Apis mellifera complementary sex det...    22   5.2  
DQ325104-1|ABD14118.1|  180|Apis mellifera complementary sex det...    22   5.2  
AY352277-1|AAQ67418.1|  418|Apis mellifera complementary sex det...    22   5.2  
AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.     22   6.8  

>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 23.0 bits (47), Expect = 3.0
 Identities = 10/29 (34%), Positives = 16/29 (55%)

Query: 161 RKDDDDYDYSEVTEENGRTVIRDDDSEDL 189
           + + D+ DYS  T+EN  +   D D + L
Sbjct: 225 KHESDNSDYSHTTDENRHSSTLDIDHKML 253


>DQ325105-1|ABD14119.1|  180|Apis mellifera complementary sex
           determiner protein.
          Length = 180

 Score = 22.2 bits (45), Expect = 5.2
 Identities = 11/25 (44%), Positives = 13/25 (52%), Gaps = 2/25 (8%)

Query: 41  IGPHRPLPAPRNLPDYRTDYRKPSN 65
           IGP  P P PR +P     +R P N
Sbjct: 150 IGP--PTPFPRFIPPNAYRFRPPQN 172


>DQ325104-1|ABD14118.1|  180|Apis mellifera complementary sex
           determiner protein.
          Length = 180

 Score = 22.2 bits (45), Expect = 5.2
 Identities = 11/25 (44%), Positives = 13/25 (52%), Gaps = 2/25 (8%)

Query: 41  IGPHRPLPAPRNLPDYRTDYRKPSN 65
           IGP  P P PR +P     +R P N
Sbjct: 150 IGP--PTPFPRFIPPNAYRFRPPQN 172


>AY352277-1|AAQ67418.1|  418|Apis mellifera complementary sex
           determiner protein.
          Length = 418

 Score = 22.2 bits (45), Expect = 5.2
 Identities = 11/25 (44%), Positives = 13/25 (52%), Gaps = 2/25 (8%)

Query: 41  IGPHRPLPAPRNLPDYRTDYRKPSN 65
           IGP  P P PR +P     +R P N
Sbjct: 388 IGP--PTPFPRFIPPNAYRFRPPQN 410


>AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.
          Length = 602

 Score = 21.8 bits (44), Expect = 6.8
 Identities = 10/25 (40%), Positives = 13/25 (52%)

Query: 134 NGIATRPPERDGPFVFGIHSPSQFP 158
           N I + P ER  P+ + I S   FP
Sbjct: 369 NIIISEPTERISPYGYPIGSGGSFP 393


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.316    0.135    0.407 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 88,446
Number of Sequences: 429
Number of extensions: 4562
Number of successful extensions: 9
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 7
Number of HSP's gapped (non-prelim): 5
length of query: 275
length of database: 140,377
effective HSP length: 57
effective length of query: 218
effective length of database: 115,924
effective search space: 25271432
effective search space used: 25271432
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 43 (21.4 bits)