GeneModel BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000217-TA|BGIBMGA000217-PA|IPR013753|Ras
         (275 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ855491-1|ABH88178.1|  144|Tribolium castaneum chemosensory pro...    23   1.9  
U09586-2|AAC47271.1|  712|Tribolium castaneum protease, reverse ...    23   2.5  
AY337337-2|AAP94193.1|  491|Tribolium castaneum cytochrome P450 ...    22   4.3  
AF251548-1|AAF70178.1|  491|Tribolium castaneum cytochrome P450 ...    22   4.3  
AY600514-1|AAT11862.1|  242|Tribolium castaneum iroquois-like pr...    21   7.6  

>DQ855491-1|ABH88178.1|  144|Tribolium castaneum chemosensory
           protein 5 protein.
          Length = 144

 Score = 23.4 bits (48), Expect = 1.9
 Identities = 8/9 (88%), Positives = 9/9 (100%)

Query: 164 DDDYDYSEV 172
           DDDYDYSE+
Sbjct: 131 DDDYDYSEL 139


>U09586-2|AAC47271.1|  712|Tribolium castaneum protease, reverse
           transcriptase andRNase H protein.
          Length = 712

 Score = 23.0 bits (47), Expect = 2.5
 Identities = 11/33 (33%), Positives = 18/33 (54%)

Query: 71  RLQESRAREKISYFQDKVTPPELNLDRREAELV 103
           ++QE  +R  I++    +  PELN    E EL+
Sbjct: 618 QIQEDGSRGVIAFASRSLRGPELNYTTTEKELL 650


>AY337337-2|AAP94193.1|  491|Tribolium castaneum cytochrome P450
           monooxygenase protein.
          Length = 491

 Score = 22.2 bits (45), Expect = 4.3
 Identities = 8/15 (53%), Positives = 10/15 (66%)

Query: 152 HSPSQFPIPRKDDDD 166
           H+P+ FP P K D D
Sbjct: 396 HNPNVFPDPEKFDPD 410


>AF251548-1|AAF70178.1|  491|Tribolium castaneum cytochrome P450
           monooxigenase CYP4Q4 protein.
          Length = 491

 Score = 22.2 bits (45), Expect = 4.3
 Identities = 8/15 (53%), Positives = 10/15 (66%)

Query: 152 HSPSQFPIPRKDDDD 166
           H+P+ FP P K D D
Sbjct: 396 HNPNVFPDPEKFDPD 410


>AY600514-1|AAT11862.1|  242|Tribolium castaneum iroquois-like
           protein protein.
          Length = 242

 Score = 21.4 bits (43), Expect = 7.6
 Identities = 9/28 (32%), Positives = 16/28 (57%)

Query: 161 RKDDDDYDYSEVTEENGRTVIRDDDSED 188
           ++DD D      +E NG+ +  DD ++D
Sbjct: 177 KRDDTDMHGRIKSERNGKDLDDDDMNDD 204


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.316    0.135    0.407 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 66,287
Number of Sequences: 317
Number of extensions: 2946
Number of successful extensions: 18
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 13
Number of HSP's gapped (non-prelim): 5
length of query: 275
length of database: 114,650
effective HSP length: 56
effective length of query: 219
effective length of database: 96,898
effective search space: 21220662
effective search space used: 21220662
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 43 (21.4 bits)