Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000217-TA|BGIBMGA000217-PA|IPR013753|Ras
(275 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC110.03 |cdc42||Rho family GTPase Cdc42|Schizosaccharomyces p... 45 1e-05
SPAC1F7.04 |rho1||Rho family GTPase Rho1|Schizosaccharomyces pom... 40 4e-04
SPAC20H4.11c |rho5||Rho family GTPase Rho5|Schizosaccharomyces p... 40 4e-04
SPAC17H9.09c |ras1|ste5|GTPase Ras1|Schizosaccharomyces pombe|ch... 40 4e-04
SPAC16A10.04 |rho4||Rho family GTPase Rho4|Schizosaccharomyces p... 38 0.002
SPAC16.01 |rho2||Rho family GTPase Rho2|Schizosaccharomyces pomb... 38 0.002
SPAC23C4.08 |rho3||Rho family GTPase Rho3|Schizosaccharomyces po... 37 0.003
SPBC428.16c |rhb1||Rheb GTPase Rhb1|Schizosaccharomyces pombe|ch... 36 0.006
SPBC1703.10 |ypt1||GTPase Ypt1|Schizosaccharomyces pombe|chr 2||... 34 0.019
SPAC6F6.15 |ypt5||GTPase Ypt5|Schizosaccharomyces pombe|chr 1|||... 32 0.078
SPAC1565.06c |spg1|sid3|GTPase Spg1|Schizosaccharomyces pombe|ch... 32 0.10
SPCP1E11.06 |apl4||AP-1 adaptor complex gamma subunit Apl4 |Schi... 31 0.18
SPAC4C5.02c |ryh1|hos1|GTPase Ryh1|Schizosaccharomyces pombe|chr... 30 0.41
SPAC9E9.07c |ypt2||GTPase Ypt2 |Schizosaccharomyces pombe|chr 1|... 29 0.55
SPAC18G6.03 |ypt3||GTPase Ypt3|Schizosaccharomyces pombe|chr 1||... 29 0.72
SPAPB1A10.10c |ypt71||GTPase Ypt71|Schizosaccharomyces pombe|chr... 28 1.3
SPBC1289.03c |spi1||Ran GTPase Spi1|Schizosaccharomyces pombe|ch... 27 2.2
SPBC19C7.05 |||cell wall organization protein |Schizosaccharomyc... 27 2.2
SPBC16E9.01c |php4|SPBP16F5.09c|CCAAT-binding factor complex sub... 27 2.2
SPBC4B4.03 |rsc1||RSC complex subunit Rsc1 |Schizosaccharomyces ... 27 2.9
SPBC1347.02 |fkbp39||FKBP-type peptidyl-prolyl cis-trans isomera... 27 3.9
SPCC285.16c |msh6||MutS protein homolog|Schizosaccharomyces pomb... 27 3.9
SPCC320.04c |||GTPase Gem1 |Schizosaccharomyces pombe|chr 3|||Ma... 27 3.9
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 26 5.1
SPBPB2B2.10c |||galactose-1-phosphate uridylyltransferase |Schiz... 26 5.1
SPBC649.03 |rhp14||XP-A family homolog Rhp14|Schizosaccharomyces... 26 6.8
SPBC1734.01c ||SPBC337.17c|RNA-binding protein|Schizosaccharomyc... 26 6.8
SPAC6B12.12 |tom70||mitochondrial TOM complex subunit Tom70|Schi... 26 6.8
SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyce... 26 6.8
SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1 |Schizosacch... 25 8.9
SPBC19C2.01 |cdc28|prp8|ATP-dependent RNA helicase Cdc28 |Schizo... 25 8.9
SPAC4G9.07 |mug133||S. pombe specific UPF0300 family protein 2|S... 25 8.9
SPCC553.12c ||SPCC794.13|conserved fungal protein|Schizosaccharo... 25 8.9
>SPAC110.03 |cdc42||Rho family GTPase Cdc42|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 192
Score = 45.2 bits (102), Expect = 1e-05
Identities = 17/35 (48%), Positives = 25/35 (71%)
Query: 231 CVLVGDGAVGKSSLIAAYAQDTFREEYQPTAYDTF 265
CV+VGDGAVGK+ L+ +Y + F +Y PT +D +
Sbjct: 6 CVVVGDGAVGKTCLLISYTTNKFPSDYVPTVFDNY 40
>SPAC1F7.04 |rho1||Rho family GTPase Rho1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 202
Score = 39.9 bits (89), Expect = 4e-04
Identities = 15/39 (38%), Positives = 26/39 (66%)
Query: 232 VLVGDGAVGKSSLIAAYAQDTFREEYQPTAYDTFNGKIQ 270
V+VGDGA GK+ L+ +++ TF E Y PT ++ + ++
Sbjct: 10 VIVGDGACGKTCLLIVFSKGTFPEVYVPTVFENYVADVE 48
>SPAC20H4.11c |rho5||Rho family GTPase Rho5|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 200
Score = 39.9 bits (89), Expect = 4e-04
Identities = 15/39 (38%), Positives = 26/39 (66%)
Query: 232 VLVGDGAVGKSSLIAAYAQDTFREEYQPTAYDTFNGKIQ 270
V+VGDGA GK+ L+ +++ TF E Y PT ++ + ++
Sbjct: 10 VIVGDGACGKTCLLIVFSKGTFPEVYVPTVFENYVADVE 48
>SPAC17H9.09c |ras1|ste5|GTPase Ras1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 219
Score = 39.9 bits (89), Expect = 4e-04
Identities = 18/39 (46%), Positives = 24/39 (61%)
Query: 232 VLVGDGAVGKSSLIAAYAQDTFREEYQPTAYDTFNGKIQ 270
V+VGDG VGKS+L Q F +EY PT D++ K +
Sbjct: 12 VVVGDGGVGKSALTIQLIQSHFVDEYDPTIEDSYRKKCE 50
>SPAC16A10.04 |rho4||Rho family GTPase Rho4|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 203
Score = 37.9 bits (84), Expect = 0.002
Identities = 14/34 (41%), Positives = 22/34 (64%)
Query: 232 VLVGDGAVGKSSLIAAYAQDTFREEYQPTAYDTF 265
V+VGDG GK+ L+ ++ TF E Y PT ++ +
Sbjct: 18 VVVGDGGCGKTCLLIVFSSGTFPERYVPTVFENY 51
>SPAC16.01 |rho2||Rho family GTPase Rho2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 200
Score = 37.9 bits (84), Expect = 0.002
Identities = 15/34 (44%), Positives = 23/34 (67%)
Query: 232 VLVGDGAVGKSSLIAAYAQDTFREEYQPTAYDTF 265
V+VGDGA GK+SL++ + F EY PT ++ +
Sbjct: 12 VVVGDGACGKTSLLSVFTLGYFPTEYVPTVFENY 45
>SPAC23C4.08 |rho3||Rho family GTPase Rho3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 205
Score = 37.1 bits (82), Expect = 0.003
Identities = 13/34 (38%), Positives = 24/34 (70%)
Query: 232 VLVGDGAVGKSSLIAAYAQDTFREEYQPTAYDTF 265
V++GDGA GK+SL+ + + F + Y+PT ++ +
Sbjct: 17 VILGDGAAGKTSLLNVFTKGYFPQVYEPTIFENY 50
>SPBC428.16c |rhb1||Rheb GTPase Rhb1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 185
Score = 35.9 bits (79), Expect = 0.006
Identities = 16/38 (42%), Positives = 24/38 (63%)
Query: 233 LVGDGAVGKSSLIAAYAQDTFREEYQPTAYDTFNGKIQ 270
++G +VGKSSL Y ++ F E Y PT +TF+ I+
Sbjct: 11 VLGSRSVGKSSLTVQYVENHFVESYYPTIENTFSKNIK 48
>SPBC1703.10 |ypt1||GTPase Ypt1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 203
Score = 34.3 bits (75), Expect = 0.019
Identities = 14/29 (48%), Positives = 19/29 (65%)
Query: 232 VLVGDGAVGKSSLIAAYAQDTFREEYQPT 260
+L+GD VGKS L+ +A DT+ E Y T
Sbjct: 12 LLIGDSGVGKSCLLLRFADDTYTESYIST 40
>SPAC6F6.15 |ypt5||GTPase Ypt5|Schizosaccharomyces pombe|chr
1|||Manual
Length = 211
Score = 32.3 bits (70), Expect = 0.078
Identities = 14/29 (48%), Positives = 20/29 (68%)
Query: 232 VLVGDGAVGKSSLIAAYAQDTFREEYQPT 260
VL+GD AVGKSSL+ + +D F + + T
Sbjct: 18 VLLGDSAVGKSSLVLRFVKDQFDDYREST 46
>SPAC1565.06c |spg1|sid3|GTPase Spg1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 198
Score = 31.9 bits (69), Expect = 0.10
Identities = 12/28 (42%), Positives = 19/28 (67%)
Query: 233 LVGDGAVGKSSLIAAYAQDTFREEYQPT 260
++GD ++GK+SL+ Y Q +F EE T
Sbjct: 15 MIGDSSIGKTSLMVTYVQGSFDEESTQT 42
>SPCP1E11.06 |apl4||AP-1 adaptor complex gamma subunit Apl4
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 865
Score = 31.1 bits (67), Expect = 0.18
Identities = 13/30 (43%), Positives = 18/30 (60%)
Query: 46 PLPAPRNLPDYRTDYRKPSNVELEKRLQES 75
PLP PR P + + +N +EKR+QES
Sbjct: 621 PLPPPRTTPYQNAEQKLKANKHVEKRVQES 650
>SPAC4C5.02c |ryh1|hos1|GTPase Ryh1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 201
Score = 29.9 bits (64), Expect = 0.41
Identities = 13/29 (44%), Positives = 18/29 (62%)
Query: 232 VLVGDGAVGKSSLIAAYAQDTFREEYQPT 260
V +G+ +VGK+SLI + D F YQ T
Sbjct: 15 VFLGEQSVGKTSLITRFMYDQFDNTYQAT 43
>SPAC9E9.07c |ypt2||GTPase Ypt2 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 200
Score = 29.5 bits (63), Expect = 0.55
Identities = 11/29 (37%), Positives = 19/29 (65%)
Query: 232 VLVGDGAVGKSSLIAAYAQDTFREEYQPT 260
+L+GD VGKS L+ +++D+F + T
Sbjct: 13 LLIGDSGVGKSCLLLRFSEDSFTPSFITT 41
>SPAC18G6.03 |ypt3||GTPase Ypt3|Schizosaccharomyces pombe|chr
1|||Manual
Length = 214
Score = 29.1 bits (62), Expect = 0.72
Identities = 12/29 (41%), Positives = 19/29 (65%)
Query: 232 VLVGDGAVGKSSLIAAYAQDTFREEYQPT 260
VL+GD VGKS+L+ + ++ F E + T
Sbjct: 14 VLIGDSGVGKSNLLMRFTRNEFNIESKST 42
>SPAPB1A10.10c |ypt71||GTPase Ypt71|Schizosaccharomyces pombe|chr
1|||Manual
Length = 208
Score = 28.3 bits (60), Expect = 1.3
Identities = 11/29 (37%), Positives = 17/29 (58%)
Query: 232 VLVGDGAVGKSSLIAAYAQDTFREEYQPT 260
V++GD VGK+ L+ + F EY+ T
Sbjct: 12 VILGDSGVGKTCLMNQFVNQKFSREYKAT 40
>SPBC1289.03c |spi1||Ran GTPase Spi1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 216
Score = 27.5 bits (58), Expect = 2.2
Identities = 11/29 (37%), Positives = 17/29 (58%)
Query: 232 VLVGDGAVGKSSLIAAYAQDTFREEYQPT 260
VLVGDG GK++ + + F ++Y T
Sbjct: 13 VLVGDGGTGKTTFVKRHLTGEFEKKYIAT 41
>SPBC19C7.05 |||cell wall organization protein |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 150
Score = 27.5 bits (58), Expect = 2.2
Identities = 16/44 (36%), Positives = 23/44 (52%), Gaps = 4/44 (9%)
Query: 117 AQYRAPTVHYAKPPIPANGIATRPPERDGPFVFGIHSPSQFPIP 160
A+Y + T+H PP+ A RPP + P V + S+FP P
Sbjct: 88 ARYNS-TIHNPMPPMSQ---AYRPPPTEPPTVPAYETSSEFPPP 127
>SPBC16E9.01c |php4|SPBP16F5.09c|CCAAT-binding factor complex
subunit Php4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 295
Score = 27.5 bits (58), Expect = 2.2
Identities = 18/63 (28%), Positives = 24/63 (38%), Gaps = 3/63 (4%)
Query: 128 KPPIPANGIATRPPERDGPFVFGIHSPSQFPIPRKDDDDYDYSEVTEENGRTVIRDDDSE 187
+PP N + T P P F S + R D D D V ENGR +
Sbjct: 144 EPPCAKNAVYTEIPIELDPHAFLGDSAKRI---RVDSDSKDAKSVPSENGRIRVSMSPQN 200
Query: 188 DLN 190
++N
Sbjct: 201 EIN 203
>SPBC4B4.03 |rsc1||RSC complex subunit Rsc1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 803
Score = 27.1 bits (57), Expect = 2.9
Identities = 16/45 (35%), Positives = 23/45 (51%), Gaps = 2/45 (4%)
Query: 43 PHRPLPAPRNLPDYRTDYRKPSNVE-LEKRLQESRAREKISYFQD 86
P LP PR P+Y +P +E ++K+L + R E I F D
Sbjct: 236 PFERLPDPRMFPEYYQAIEQPMALEVIQKKLSKHR-YETIEQFVD 279
>SPBC1347.02 |fkbp39||FKBP-type peptidyl-prolyl cis-trans
isomerase|Schizosaccharomyces pombe|chr 2|||Manual
Length = 361
Score = 26.6 bits (56), Expect = 3.9
Identities = 11/27 (40%), Positives = 17/27 (62%)
Query: 162 KDDDDYDYSEVTEENGRTVIRDDDSED 188
+ D+DYD S E+ TV D++SE+
Sbjct: 132 ESDEDYDLSPTEEDLVETVSGDEESEE 158
>SPCC285.16c |msh6||MutS protein homolog|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1254
Score = 26.6 bits (56), Expect = 3.9
Identities = 13/48 (27%), Positives = 22/48 (45%), Gaps = 1/48 (2%)
Query: 142 ERDGPFVFGIHSPSQFPIPRKDDD-DYDYSEVTEENGRTVIRDDDSED 188
E D PF+ S D+D D+D + + ++ DD+S+D
Sbjct: 185 EVDKPFIASRRSRKPVSYAESDEDEDFDDAPTKGSRHKRIVSDDESDD 232
>SPCC320.04c |||GTPase Gem1 |Schizosaccharomyces pombe|chr
3|||Manual
Length = 630
Score = 26.6 bits (56), Expect = 3.9
Identities = 12/20 (60%), Positives = 15/20 (75%)
Query: 232 VLVGDGAVGKSSLIAAYAQD 251
V+ GD VGKSSLI+A Q+
Sbjct: 7 VICGDQGVGKSSLISALIQE 26
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 26.2 bits (55), Expect = 5.1
Identities = 14/32 (43%), Positives = 20/32 (62%), Gaps = 4/32 (12%)
Query: 129 PPIPANGIATRPPERDGPFVFGIHSPSQFPIP 160
PPIP + ++RPPER V + +P+ PIP
Sbjct: 230 PPIPPSIPSSRPPER----VPSLSAPAPPPIP 257
>SPBPB2B2.10c |||galactose-1-phosphate uridylyltransferase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 369
Score = 26.2 bits (55), Expect = 5.1
Identities = 19/57 (33%), Positives = 27/57 (47%), Gaps = 8/57 (14%)
Query: 122 PTVHYAKPPIPANGIATRPPERDGPFVFGIHSPSQFPIPRKDDDDY--DYSEVTEEN 176
PT + I A G P+ + +VF P+ +P R D DY D SE+T+ N
Sbjct: 52 PTCYLCPGNIRATGFEN--PKYETTYVF----PNDYPAVRVDQPDYMQDESEITKGN 102
>SPBC649.03 |rhp14||XP-A family homolog Rhp14|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 289
Score = 25.8 bits (54), Expect = 6.8
Identities = 13/51 (25%), Positives = 29/51 (56%), Gaps = 2/51 (3%)
Query: 162 KDDDDYDYSEVTEENGRTVIRDDDSEDLNCCDKVNDWAVRDKKNRRTLNRM 212
KD +YD+S++ + G ++ + EDL +K + +R+++ R+ R+
Sbjct: 55 KDYIEYDFSKIEDTKGGYLLEEKKVEDLR--EKPAERELREQEERQKKLRL 103
>SPBC1734.01c ||SPBC337.17c|RNA-binding protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 682
Score = 25.8 bits (54), Expect = 6.8
Identities = 13/34 (38%), Positives = 19/34 (55%)
Query: 68 LEKRLQESRAREKISYFQDKVTPPELNLDRREAE 101
+EK + ESR R Q + PEL + +R+AE
Sbjct: 629 VEKIMDESRKRRSNQLEQTQDGKPELKIKKRKAE 662
>SPAC6B12.12 |tom70||mitochondrial TOM complex subunit
Tom70|Schizosaccharomyces pombe|chr 1|||Manual
Length = 625
Score = 25.8 bits (54), Expect = 6.8
Identities = 16/46 (34%), Positives = 22/46 (47%), Gaps = 5/46 (10%)
Query: 72 LQESRAREKISYFQDKVTPPELNLDRREAELVFRFDNHEPTEYSTA 117
LQ+ +ARE + YF+ L R E+E+V F E T A
Sbjct: 569 LQQGKAREALEYFEKSA-----QLARTESEMVNAFSYAEATRTQIA 609
>SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1957
Score = 25.8 bits (54), Expect = 6.8
Identities = 10/25 (40%), Positives = 16/25 (64%)
Query: 77 AREKISYFQDKVTPPELNLDRREAE 101
+ E +SYFQ K+T E N +++E
Sbjct: 178 SEEDVSYFQKKLTNMESNFSAKQSE 202
>SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 754
Score = 25.4 bits (53), Expect = 8.9
Identities = 16/60 (26%), Positives = 31/60 (51%), Gaps = 1/60 (1%)
Query: 59 DYRKPSNVELEKRLQESRAREKISYFQDKVTPPELNLDRREA-ELVFRFDNHEPTEYSTA 117
D PSNVEL+K+ +++ + + + + ++N D A ++ + FD TE + A
Sbjct: 69 DEEMPSNVELKKKSKKATPAKDSDFNGEFLFEADVNKDLSSATDMNWDFDMGSKTESNRA 128
>SPBC19C2.01 |cdc28|prp8|ATP-dependent RNA helicase Cdc28
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1055
Score = 25.4 bits (53), Expect = 8.9
Identities = 17/73 (23%), Positives = 36/73 (49%), Gaps = 2/73 (2%)
Query: 57 RTDYRKP-SNVELEKRLQESRAREKISYFQDKVTPPELNLDRREAELVFRFDNHEPTEYS 115
R Y KP + +LE +E R E++ + +K+T E+ ++ EL+ + + E
Sbjct: 240 RQQYLKPRAQQQLEILRREIRDEEQL-FAGEKLTQAEIRELEKKKELLRIAEERQRLEKQ 298
Query: 116 TAQYRAPTVHYAK 128
+Y+ P ++ +
Sbjct: 299 ATEYQMPEDYFTE 311
>SPAC4G9.07 |mug133||S. pombe specific UPF0300 family protein
2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 513
Score = 25.4 bits (53), Expect = 8.9
Identities = 13/32 (40%), Positives = 18/32 (56%)
Query: 180 VIRDDDSEDLNCCDKVNDWAVRDKKNRRTLNR 211
+IR D EDL CD + + ++ R TLNR
Sbjct: 419 IIRKDLLEDLIQCDSYVNTREQLRRRRETLNR 450
>SPCC553.12c ||SPCC794.13|conserved fungal
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 521
Score = 25.4 bits (53), Expect = 8.9
Identities = 12/33 (36%), Positives = 17/33 (51%), Gaps = 1/33 (3%)
Query: 101 ELVFRFDNHEP-TEYSTAQYRAPTVHYAKPPIP 132
EL+F D + T+Y +Y PT+ Y P P
Sbjct: 45 ELLFDDDEYTAKTQYDGPRYAMPTMFYPNKPTP 77
Database: spombe
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.316 0.135 0.407
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,329,534
Number of Sequences: 5004
Number of extensions: 58285
Number of successful extensions: 185
Number of sequences better than 10.0: 33
Number of HSP's better than 10.0 without gapping: 24
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 159
Number of HSP's gapped (non-prelim): 35
length of query: 275
length of database: 2,362,478
effective HSP length: 72
effective length of query: 203
effective length of database: 2,002,190
effective search space: 406444570
effective search space used: 406444570
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 53 (25.4 bits)
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