Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000217-TA|BGIBMGA000217-PA|IPR013753|Ras
(275 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_11757| Best HMM Match : Ras (HMM E-Value=0) 52 7e-07
SB_6284| Best HMM Match : No HMM Matches (HMM E-Value=.) 46 3e-05
SB_22530| Best HMM Match : No HMM Matches (HMM E-Value=.) 43 3e-04
SB_46477| Best HMM Match : No HMM Matches (HMM E-Value=.) 41 0.001
SB_22528| Best HMM Match : No HMM Matches (HMM E-Value=.) 39 0.005
SB_52002| Best HMM Match : Ras (HMM E-Value=2.3e-19) 38 0.007
SB_56256| Best HMM Match : Ras (HMM E-Value=8.9e-31) 38 0.012
SB_48157| Best HMM Match : No HMM Matches (HMM E-Value=.) 37 0.016
SB_3743| Best HMM Match : No HMM Matches (HMM E-Value=.) 37 0.016
SB_6223| Best HMM Match : Ras (HMM E-Value=0) 35 0.063
SB_4971| Best HMM Match : Ras (HMM E-Value=0) 35 0.063
SB_47462| Best HMM Match : Ras (HMM E-Value=0) 35 0.063
SB_55988| Best HMM Match : bZIP_1 (HMM E-Value=7.4e-06) 35 0.083
SB_33999| Best HMM Match : No HMM Matches (HMM E-Value=.) 34 0.15
SB_5823| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.19
SB_1071| Best HMM Match : Ras (HMM E-Value=0) 33 0.19
SB_27557| Best HMM Match : Ras (HMM E-Value=0) 33 0.25
SB_42246| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.44
SB_5178| Best HMM Match : Ras (HMM E-Value=9e-10) 32 0.44
SB_31904| Best HMM Match : Extensin_2 (HMM E-Value=0.5) 31 0.78
SB_13398| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.78
SB_24106| Best HMM Match : Ras (HMM E-Value=1e-35) 31 1.0
SB_12762| Best HMM Match : Ras (HMM E-Value=2.2e-21) 31 1.0
SB_2840| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.0
SB_45967| Best HMM Match : Ras (HMM E-Value=2.1e-07) 31 1.0
SB_47047| Best HMM Match : DUF761 (HMM E-Value=3.2) 31 1.4
SB_8680| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.4
SB_27857| Best HMM Match : Cadherin (HMM E-Value=0) 30 1.8
SB_13045| Best HMM Match : Ras (HMM E-Value=0) 30 1.8
SB_1988| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.8
SB_50855| Best HMM Match : Ras (HMM E-Value=0) 30 1.8
SB_33691| Best HMM Match : Ras (HMM E-Value=2.8e-13) 30 1.8
SB_27885| Best HMM Match : Cytadhesin_P30 (HMM E-Value=0.051) 30 1.8
SB_29253| Best HMM Match : Ras (HMM E-Value=2.8e-05) 30 2.4
SB_33745| Best HMM Match : Ras (HMM E-Value=2.5e-21) 30 2.4
SB_54040| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.1
SB_8853| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.1
SB_24209| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.1
SB_10217| Best HMM Match : ubiquitin (HMM E-Value=1.6e-06) 29 3.1
SB_32061| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.1
SB_49133| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.5
SB_34024| Best HMM Match : VLPT (HMM E-Value=3.7) 29 5.5
SB_12412| Best HMM Match : Kinesin (HMM E-Value=6.3e-15) 29 5.5
SB_52560| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.5
SB_58700| Best HMM Match : Ras (HMM E-Value=2.7e-15) 28 7.2
SB_41749| Best HMM Match : Homeobox (HMM E-Value=4.1e-29) 28 7.2
SB_21593| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.2
SB_17492| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.2
SB_15441| Best HMM Match : RVT_1 (HMM E-Value=1e-19) 28 7.2
SB_8315| Best HMM Match : Ras (HMM E-Value=0) 28 7.2
SB_45519| Best HMM Match : RNB (HMM E-Value=1.6e-35) 28 7.2
SB_37516| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.2
SB_26017| Best HMM Match : Extensin_2 (HMM E-Value=0.11) 28 7.2
SB_16515| Best HMM Match : Extensin_2 (HMM E-Value=0.12) 28 7.2
SB_25039| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.6
SB_23697| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.6
SB_18024| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.6
SB_6006| Best HMM Match : Annexin (HMM E-Value=2.4e-25) 28 9.6
SB_2508| Best HMM Match : RVT_1 (HMM E-Value=1e-05) 28 9.6
SB_44985| Best HMM Match : YhjQ (HMM E-Value=0.37) 28 9.6
SB_42885| Best HMM Match : DUF983 (HMM E-Value=9.7) 28 9.6
SB_38760| Best HMM Match : Ras (HMM E-Value=4.6e-06) 28 9.6
SB_25550| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.6
SB_7861| Best HMM Match : MMR_HSR1 (HMM E-Value=0.96) 28 9.6
>SB_11757| Best HMM Match : Ras (HMM E-Value=0)
Length = 211
Score = 51.6 bits (118), Expect = 7e-07
Identities = 20/40 (50%), Positives = 29/40 (72%)
Query: 231 CVLVGDGAVGKSSLIAAYAQDTFREEYQPTAYDTFNGKIQ 270
CV+VGDG VGK+SL+ +Y D F Y PTA+DT++ ++
Sbjct: 21 CVIVGDGGVGKTSLLVSYMMDGFPNSYVPTAFDTYHVTVE 60
>SB_6284| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 191
Score = 46.4 bits (105), Expect = 3e-05
Identities = 18/35 (51%), Positives = 25/35 (71%)
Query: 231 CVLVGDGAVGKSSLIAAYAQDTFREEYQPTAYDTF 265
CV+VGDGAVGK+ L+ +Y + F EY PT +D +
Sbjct: 6 CVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNY 40
>SB_22530| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 191
Score = 42.7 bits (96), Expect = 3e-04
Identities = 19/31 (61%), Positives = 23/31 (74%)
Query: 233 LVGDGAVGKSSLIAAYAQDTFREEYQPTAYD 263
+VGDGAVGK++L A +TF EY PTAYD
Sbjct: 11 IVGDGAVGKTALFITAATNTFPTEYIPTAYD 41
>SB_46477| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 6116
Score = 40.7 bits (91), Expect = 0.001
Identities = 16/39 (41%), Positives = 26/39 (66%)
Query: 232 VLVGDGAVGKSSLIAAYAQDTFREEYQPTAYDTFNGKIQ 270
V+VGDGA GK+ L+ +++D F E Y PT ++ + I+
Sbjct: 5933 VIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIE 5971
>SB_22528| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 467
Score = 38.7 bits (86), Expect = 0.005
Identities = 16/38 (42%), Positives = 23/38 (60%)
Query: 232 VLVGDGAVGKSSLIAAYAQDTFREEYQPTAYDTFNGKI 269
V+VGDG VGKS+ + + F EY PT +D ++ I
Sbjct: 9 VVVGDGGVGKSAFLITATTNAFPGEYIPTVFDNYSSNI 46
>SB_52002| Best HMM Match : Ras (HMM E-Value=2.3e-19)
Length = 351
Score = 38.3 bits (85), Expect = 0.007
Identities = 15/38 (39%), Positives = 23/38 (60%)
Query: 232 VLVGDGAVGKSSLIAAYAQDTFREEYQPTAYDTFNGKI 269
V++G G VGK+SL+ + TF E+Y PT D + +
Sbjct: 111 VVLGSGGVGKTSLVKRFISGTFSEQYTPTVGDLYEKSV 148
>SB_56256| Best HMM Match : Ras (HMM E-Value=8.9e-31)
Length = 506
Score = 37.5 bits (83), Expect = 0.012
Identities = 13/39 (33%), Positives = 27/39 (69%)
Query: 232 VLVGDGAVGKSSLIAAYAQDTFREEYQPTAYDTFNGKIQ 270
+LVGD GK++L+ AY ++ F E+Y+ T +++ + ++
Sbjct: 236 ILVGDSECGKTALLNAYVRNQFNEKYEATVFNSLSTAVE 274
>SB_48157| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1306
Score = 37.1 bits (82), Expect = 0.016
Identities = 18/58 (31%), Positives = 27/58 (46%)
Query: 203 KKNRRTLNRMFQXXXXXXXXXXXXXXXXCVLVGDGAVGKSSLIAAYAQDTFREEYQPT 260
KK +++ R ++G+G VGKSSLI + + F+EEY PT
Sbjct: 2 KKQQKSSKRKASHQALGKRSSAYLKKLTIAVLGEGRVGKSSLIRGFCGEGFQEEYVPT 59
>SB_3743| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 365
Score = 37.1 bits (82), Expect = 0.016
Identities = 16/29 (55%), Positives = 19/29 (65%)
Query: 232 VLVGDGAVGKSSLIAAYAQDTFREEYQPT 260
V +GD VGKSSL + D F E+YQPT
Sbjct: 167 VFLGDQGVGKSSLAGRFIYDIFEEKYQPT 195
>SB_6223| Best HMM Match : Ras (HMM E-Value=0)
Length = 1665
Score = 35.1 bits (77), Expect = 0.063
Identities = 15/34 (44%), Positives = 21/34 (61%)
Query: 232 VLVGDGAVGKSSLIAAYAQDTFREEYQPTAYDTF 265
V+VG G VGKS+L + Q F +Y PT D++
Sbjct: 15 VVVGGGGVGKSALTIQFIQSHFVSDYDPTIEDSY 48
>SB_4971| Best HMM Match : Ras (HMM E-Value=0)
Length = 209
Score = 35.1 bits (77), Expect = 0.063
Identities = 15/29 (51%), Positives = 19/29 (65%)
Query: 232 VLVGDGAVGKSSLIAAYAQDTFREEYQPT 260
+L+GD VGKSSL+ +A DTF Y T
Sbjct: 12 LLIGDSGVGKSSLLLRFADDTFSNTYIST 40
>SB_47462| Best HMM Match : Ras (HMM E-Value=0)
Length = 385
Score = 35.1 bits (77), Expect = 0.063
Identities = 15/39 (38%), Positives = 23/39 (58%)
Query: 232 VLVGDGAVGKSSLIAAYAQDTFREEYQPTAYDTFNGKIQ 270
V++G G VGKS+L + F E+Y PT D + +I+
Sbjct: 7 VVLGSGGVGKSALTVQFVTGQFVEKYDPTIEDFYRKEIE 45
>SB_55988| Best HMM Match : bZIP_1 (HMM E-Value=7.4e-06)
Length = 150
Score = 34.7 bits (76), Expect = 0.083
Identities = 25/70 (35%), Positives = 37/70 (52%), Gaps = 11/70 (15%)
Query: 43 PHRP-LPAPRNLPDYRTDYRKPSNVELEKRLQ-------ESRAREKISY--FQDKVTPPE 92
PH P + +PR L + RKPS ++LE +L+ E RAR+K+ Y +D VT E
Sbjct: 51 PHSPKITSPRKLEGKKRG-RKPSQIDLEAKLERSRQSARECRARKKLRYKCLEDTVTRKE 109
Query: 93 LNLDRREAEL 102
+ + EL
Sbjct: 110 SEVSKLRQEL 119
>SB_33999| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 57
Score = 33.9 bits (74), Expect = 0.15
Identities = 13/29 (44%), Positives = 18/29 (62%)
Query: 232 VLVGDGAVGKSSLIAAYAQDTFREEYQPT 260
++VGD VGK+S + Y R EY+PT
Sbjct: 26 LIVGDATVGKTSFVQRYVHGNTRREYKPT 54
>SB_5823| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2324
Score = 33.5 bits (73), Expect = 0.19
Identities = 14/52 (26%), Positives = 29/52 (55%)
Query: 163 DDDDYDYSEVTEENGRTVIRDDDSEDLNCCDKVNDWAVRDKKNRRTLNRMFQ 214
DDDD D + ++ ++++ + ED N D+ ++ +R +K + L R+ Q
Sbjct: 501 DDDDDDDDQDDDDEEQSILSEQAIEDYNSQDQEAEYQIRLQKQKNELERLLQ 552
>SB_1071| Best HMM Match : Ras (HMM E-Value=0)
Length = 228
Score = 33.5 bits (73), Expect = 0.19
Identities = 14/35 (40%), Positives = 21/35 (60%)
Query: 232 VLVGDGAVGKSSLIAAYAQDTFREEYQPTAYDTFN 266
V++G G VGKS+L + F E+Y PT D ++
Sbjct: 7 VVLGSGGVGKSALTVQFVTGQFVEKYDPTIEDFYH 41
>SB_27557| Best HMM Match : Ras (HMM E-Value=0)
Length = 184
Score = 33.1 bits (72), Expect = 0.25
Identities = 14/38 (36%), Positives = 22/38 (57%)
Query: 232 VLVGDGAVGKSSLIAAYAQDTFREEYQPTAYDTFNGKI 269
+L+GD VGKSSL+ + + F E PT F+ ++
Sbjct: 17 ILIGDSTVGKSSLLRQFTEGQFFENSDPTVGVDFHVRV 54
>SB_42246| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 310
Score = 32.3 bits (70), Expect = 0.44
Identities = 14/35 (40%), Positives = 20/35 (57%)
Query: 232 VLVGDGAVGKSSLIAAYAQDTFREEYQPTAYDTFN 266
VL+G VGKS+L+ + F EY PT T++
Sbjct: 131 VLLGQAGVGKSALLVRFCTGRFIHEYDPTLEMTYD 165
>SB_5178| Best HMM Match : Ras (HMM E-Value=9e-10)
Length = 166
Score = 32.3 bits (70), Expect = 0.44
Identities = 13/37 (35%), Positives = 21/37 (56%)
Query: 235 GDGAVGKSSLIAAYAQDTFREEYQPTAYDTFNGKIQK 271
G VGK+S++ + F EEY+PT D ++ + K
Sbjct: 15 GGAGVGKTSIVKRFYCGKFSEEYEPTVEDCYSKVLNK 51
>SB_31904| Best HMM Match : Extensin_2 (HMM E-Value=0.5)
Length = 398
Score = 31.5 bits (68), Expect = 0.78
Identities = 20/70 (28%), Positives = 31/70 (44%), Gaps = 3/70 (4%)
Query: 89 TPPELNLDRREAELVFRFDNHEPTEYSTAQYRAPTVHYAKPPIPANGIATRPPERDGPFV 148
TPP N D E+V R +PT Y + +A + PP+ + G + D
Sbjct: 42 TPPPANFDNDYEEVVVRKKPTKPTPYKPTESKAE--EFVVPPLFSRGFSEDVQSPDEDSS 99
Query: 149 FGIHSPSQFP 158
+ + SP +FP
Sbjct: 100 YEVTSP-RFP 108
>SB_13398| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2149
Score = 31.5 bits (68), Expect = 0.78
Identities = 20/70 (28%), Positives = 31/70 (44%), Gaps = 3/70 (4%)
Query: 89 TPPELNLDRREAELVFRFDNHEPTEYSTAQYRAPTVHYAKPPIPANGIATRPPERDGPFV 148
TPP N D E+V R +PT Y + +A + PP+ + G + D
Sbjct: 1799 TPPPANFDNDYEEVVVRKKPTKPTPYKPTESKAE--EFVVPPLFSRGFSEDVQSPDEDSS 1856
Query: 149 FGIHSPSQFP 158
+ + SP +FP
Sbjct: 1857 YEVTSP-RFP 1865
>SB_24106| Best HMM Match : Ras (HMM E-Value=1e-35)
Length = 263
Score = 31.1 bits (67), Expect = 1.0
Identities = 14/37 (37%), Positives = 20/37 (54%)
Query: 233 LVGDGAVGKSSLIAAYAQDTFREEYQPTAYDTFNGKI 269
L+GD VGK++L+ + F EY PT D + I
Sbjct: 10 LLGDEGVGKTALLVRFLCHRFLGEYDPTIEDKYRKSI 46
>SB_12762| Best HMM Match : Ras (HMM E-Value=2.2e-21)
Length = 242
Score = 31.1 bits (67), Expect = 1.0
Identities = 14/34 (41%), Positives = 19/34 (55%)
Query: 232 VLVGDGAVGKSSLIAAYAQDTFREEYQPTAYDTF 265
V G +VGK+SLI + F ++Y PT D F
Sbjct: 32 VFFGASSVGKTSLILRFLGYAFNDDYSPTIEDFF 65
>SB_2840| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2248
Score = 31.1 bits (67), Expect = 1.0
Identities = 21/91 (23%), Positives = 37/91 (40%), Gaps = 1/91 (1%)
Query: 11 NRNTNLSARRPLLAEPQKXXXXXXXXXXXDIGPHRPLPAPRNLPDYRTDYRKPSNVELEK 70
+RNT +A +P +P + P P + P + +P N EK
Sbjct: 356 DRNTFANADKPS-NQPSQVQEEVPTSRDQSGSPDNDHPTDVDKPAGDPEDERPKNQSPEK 414
Query: 71 RLQESRAREKISYFQDKVTPPELNLDRREAE 101
++E ++ +QDK P++N + E E
Sbjct: 415 GMEEPVKSDQEGSYQDKQDSPDVNRETEEVE 445
>SB_45967| Best HMM Match : Ras (HMM E-Value=2.1e-07)
Length = 92
Score = 31.1 bits (67), Expect = 1.0
Identities = 14/38 (36%), Positives = 22/38 (57%)
Query: 233 LVGDGAVGKSSLIAAYAQDTFREEYQPTAYDTFNGKIQ 270
++G +VGKSSL + + F + Y PT +TF I+
Sbjct: 11 VMGFRSVGKSSLTIQFVEGQFVDSYDPTIENTFTKNIK 48
>SB_47047| Best HMM Match : DUF761 (HMM E-Value=3.2)
Length = 389
Score = 30.7 bits (66), Expect = 1.4
Identities = 14/72 (19%), Positives = 34/72 (47%), Gaps = 2/72 (2%)
Query: 136 IATRPPERDGPFVFGIHSPSQFPIPRKDDDDYDYSEVTEENGRTVIRDDDSEDLNCCDKV 195
++ + +R+ + G HS S P +D+ D E G ++ + +E CC++
Sbjct: 160 VSPKKLDREPVYQNGEHSASPSPRSTHSNDNSDIGSTFE--GAVKVKTEQNESTECCNRQ 217
Query: 196 NDWAVRDKKNRR 207
+ ++++ R+
Sbjct: 218 REETLKERPKRK 229
>SB_8680| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2462
Score = 30.7 bits (66), Expect = 1.4
Identities = 17/51 (33%), Positives = 25/51 (49%), Gaps = 1/51 (1%)
Query: 60 YRKPSNVELEKRLQESRAREKISYFQDKVTPPELNLDRREAELVFRFDNHE 110
YRK S E E+ + E + + K+S + K P EL D E FD+ +
Sbjct: 45 YRK-SLEEQERTIYEKKKKLKLSLSEGKAIPTELRKDEAELREAIEFDDEK 94
>SB_27857| Best HMM Match : Cadherin (HMM E-Value=0)
Length = 2418
Score = 30.3 bits (65), Expect = 1.8
Identities = 23/78 (29%), Positives = 37/78 (47%), Gaps = 3/78 (3%)
Query: 105 RFDNHEPTEYSTAQYRAPTVHYAKPPIPANGIATR-PPERDGPFVFGIHSPSQFPIPRKD 163
RF ++ + STA P V Y + I A+ ATR P P ++SPS+ PI D
Sbjct: 948 RFILNDNNQLSTASTLTPNVRY-QLLIRASDSATRNPSSAQVPVYVSVYSPSESPIV-FD 1005
Query: 164 DDDYDYSEVTEENGRTVI 181
Y+ + + + T++
Sbjct: 1006 KSSYNQNLPEDSSANTLV 1023
>SB_13045| Best HMM Match : Ras (HMM E-Value=0)
Length = 629
Score = 30.3 bits (65), Expect = 1.8
Identities = 13/29 (44%), Positives = 20/29 (68%)
Query: 232 VLVGDGAVGKSSLIAAYAQDTFREEYQPT 260
VL+GD VGKSSL++ + ++ F E + T
Sbjct: 16 VLIGDSGVGKSSLLSRFTRNEFDIESKST 44
>SB_1988| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3889
Score = 30.3 bits (65), Expect = 1.8
Identities = 14/36 (38%), Positives = 21/36 (58%)
Query: 162 KDDDDYDYSEVTEENGRTVIRDDDSEDLNCCDKVND 197
K+DDD+D+ + ++ + DDD ED D VND
Sbjct: 24 KEDDDFDHYDGVDDVDDSDDDDDDDEDDIILDDVND 59
>SB_50855| Best HMM Match : Ras (HMM E-Value=0)
Length = 733
Score = 30.3 bits (65), Expect = 1.8
Identities = 13/29 (44%), Positives = 19/29 (65%)
Query: 232 VLVGDGAVGKSSLIAAYAQDTFREEYQPT 260
VL+G+ AVGKSSL+ + + F E + T
Sbjct: 25 VLLGESAVGKSSLVLRFVKGQFHEYQEST 53
>SB_33691| Best HMM Match : Ras (HMM E-Value=2.8e-13)
Length = 270
Score = 30.3 bits (65), Expect = 1.8
Identities = 13/33 (39%), Positives = 20/33 (60%)
Query: 233 LVGDGAVGKSSLIAAYAQDTFREEYQPTAYDTF 265
++G G VGK+SL+ + F E++ PT D F
Sbjct: 17 ILGAGGVGKTSLLKTFFGHKFSEKHVPTVDDYF 49
>SB_27885| Best HMM Match : Cytadhesin_P30 (HMM E-Value=0.051)
Length = 421
Score = 30.3 bits (65), Expect = 1.8
Identities = 25/74 (33%), Positives = 27/74 (36%), Gaps = 9/74 (12%)
Query: 108 NHEPTEYSTAQ---YRAPTVHYAKPPIPANGIATRPPERDGPFVFGIHSPSQFPIPRKDD 164
NH T Y Y P Y P PA G PP P G P+ +P D
Sbjct: 221 NHPLTNYPAPPPQGYAPPPGGYPGAP-PAGGYPGAPPPGGYP---GGPPPANYPASESDS 276
Query: 165 DDYDYS--EVTEEN 176
DD DY V E N
Sbjct: 277 DDEDYGPHSVEERN 290
>SB_29253| Best HMM Match : Ras (HMM E-Value=2.8e-05)
Length = 68
Score = 29.9 bits (64), Expect = 2.4
Identities = 12/29 (41%), Positives = 20/29 (68%)
Query: 232 VLVGDGAVGKSSLIAAYAQDTFREEYQPT 260
VL+GD VGKS+L++ + ++ F E + T
Sbjct: 15 VLIGDSGVGKSNLLSRFTRNEFNLESKST 43
>SB_33745| Best HMM Match : Ras (HMM E-Value=2.5e-21)
Length = 115
Score = 29.9 bits (64), Expect = 2.4
Identities = 13/37 (35%), Positives = 21/37 (56%)
Query: 232 VLVGDGAVGKSSLIAAYAQDTFREEYQPTAYDTFNGK 268
+++G+ AVGK+S + YA D+F + T F K
Sbjct: 25 LIIGNSAVGKTSFLFRYADDSFTSAFVSTVGIDFKVK 61
>SB_54040| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 64
Score = 29.5 bits (63), Expect = 3.1
Identities = 14/43 (32%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
Query: 161 RKDDDDYDYSEVTEENGRTVIRDDDSEDLNCCDKVNDW-AVRD 202
R DDDD D+ +++ DDD++D+ D +D+ +RD
Sbjct: 4 RDDDDDDDHIADDDDDDHIADDDDDNDDIGYDDNDDDYDVIRD 46
>SB_8853| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 76
Score = 29.5 bits (63), Expect = 3.1
Identities = 11/22 (50%), Positives = 17/22 (77%)
Query: 232 VLVGDGAVGKSSLIAAYAQDTF 253
VL+GD VGKS+L++ Y ++ F
Sbjct: 22 VLIGDSGVGKSNLLSRYTKNEF 43
>SB_24209| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 64
Score = 29.5 bits (63), Expect = 3.1
Identities = 15/43 (34%), Positives = 22/43 (51%)
Query: 163 DDDDYDYSEVTEENGRTVIRDDDSEDLNCCDKVNDWAVRDKKN 205
DDDD D + +++ V DDD +D + D ND+ D N
Sbjct: 21 DDDDDDDDDDDDDDDDDVCDDDDDDDCDELDYNNDYDGVDDNN 63
>SB_10217| Best HMM Match : ubiquitin (HMM E-Value=1.6e-06)
Length = 479
Score = 29.5 bits (63), Expect = 3.1
Identities = 24/77 (31%), Positives = 28/77 (36%), Gaps = 6/77 (7%)
Query: 122 PTVHYAKPPIPANGIATRPPERDGPFVFGIHSPSQFPIPRKDDDDYDYSEVTEENGRTVI 181
P +H+ + P PP P V P Q P D EV G V
Sbjct: 152 PQMHFMQHPQHVGLTFATPPSPTTPPV-DQQLPQQQAPPPPPPADQGNEEVRMNAGGGVA 210
Query: 182 RDDDSEDLNCCDKVNDW 198
DDD E+LN NDW
Sbjct: 211 NDDDEENLN-----NDW 222
>SB_32061| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 919
Score = 29.1 bits (62), Expect = 4.1
Identities = 11/22 (50%), Positives = 16/22 (72%)
Query: 232 VLVGDGAVGKSSLIAAYAQDTF 253
++VG+ VGKSSL+ + DTF
Sbjct: 12 LIVGESGVGKSSLLLRFTDDTF 33
>SB_49133| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1331
Score = 28.7 bits (61), Expect = 5.5
Identities = 15/38 (39%), Positives = 22/38 (57%), Gaps = 2/38 (5%)
Query: 153 SPSQFPIPRKDDDDYDYSEVTEENGRTVIRDDDSEDLN 190
SP FP+ K++ S T+ENG T D++S+D N
Sbjct: 65 SPKDFPV--KENQGTIESLNTKENGNTFAADNESKDKN 100
>SB_34024| Best HMM Match : VLPT (HMM E-Value=3.7)
Length = 368
Score = 28.7 bits (61), Expect = 5.5
Identities = 11/29 (37%), Positives = 17/29 (58%)
Query: 232 VLVGDGAVGKSSLIAAYAQDTFREEYQPT 260
V++G VGK++L+ + F EY PT
Sbjct: 328 VVLGAAGVGKTALVVRFVTGRFLNEYDPT 356
>SB_12412| Best HMM Match : Kinesin (HMM E-Value=6.3e-15)
Length = 1001
Score = 28.7 bits (61), Expect = 5.5
Identities = 15/26 (57%), Positives = 17/26 (65%), Gaps = 1/26 (3%)
Query: 163 DDDDYDYSEVTEENGRTVIRDDDSED 188
D+DD D +EV EEN V DDDS D
Sbjct: 606 DEDDDDTAEVHEEN-EQVSSDDDSTD 630
>SB_52560| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1263
Score = 28.7 bits (61), Expect = 5.5
Identities = 13/38 (34%), Positives = 18/38 (47%)
Query: 160 PRKDDDDYDYSEVTEENGRTVIRDDDSEDLNCCDKVND 197
P + DYDY E E+ D+ +D +CCD D
Sbjct: 1215 PDYGNGDYDYDENDEDEEGDDDYDNGDDDNDCCDHDED 1252
>SB_58700| Best HMM Match : Ras (HMM E-Value=2.7e-15)
Length = 857
Score = 28.3 bits (60), Expect = 7.2
Identities = 15/43 (34%), Positives = 23/43 (53%), Gaps = 2/43 (4%)
Query: 232 VLVGDGAVGKSSLIAAYAQDTFREEYQPTAYDTFNGKIQKQPI 274
+++GD VGK+SLI Y F Y+ T +FN K+ +
Sbjct: 675 LVIGDLGVGKTSLIKRYVHQFFSVHYRATV--SFNIVYYKEAV 715
>SB_41749| Best HMM Match : Homeobox (HMM E-Value=4.1e-29)
Length = 269
Score = 28.3 bits (60), Expect = 7.2
Identities = 19/86 (22%), Positives = 36/86 (41%), Gaps = 3/86 (3%)
Query: 103 VFRFDNHEPTEYSTAQYRAPTVHYAKPPIPANGIATRPPE--RDGPFVFGIHSPSQFPIP 160
+F ++ + ++ AQ + +HY P P + PP P + SPS P
Sbjct: 164 MFPYEYYNTDFWACAQQQIAAMHYTGIPAPGLSVVPSPPRSTESSPVQSPVSSPSSSP-T 222
Query: 161 RKDDDDYDYSEVTEENGRTVIRDDDS 186
++ S+ TE + +++D S
Sbjct: 223 KEVASAPGASQHTEGGNQFEVKNDTS 248
>SB_21593| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 171
Score = 28.3 bits (60), Expect = 7.2
Identities = 16/44 (36%), Positives = 22/44 (50%), Gaps = 1/44 (2%)
Query: 163 DDDDYDYSE-VTEENGRTVIRDDDSEDLNCCDKVNDWAVRDKKN 205
DDDDYDY E + ++ D+D +D N D D D+ N
Sbjct: 95 DDDDYDYEEDIDGDDDGDYEEDNDGDDENEDDYEEDNDGDDENN 138
>SB_17492| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 101
Score = 28.3 bits (60), Expect = 7.2
Identities = 13/30 (43%), Positives = 18/30 (60%), Gaps = 2/30 (6%)
Query: 163 DDDDYDYSEVTEENGRTVI--RDDDSEDLN 190
DDDD D ++ E R ++ DDD ED+N
Sbjct: 65 DDDDDDDDKIMESEVRMLVTSHDDDDEDVN 94
>SB_15441| Best HMM Match : RVT_1 (HMM E-Value=1e-19)
Length = 674
Score = 28.3 bits (60), Expect = 7.2
Identities = 16/54 (29%), Positives = 26/54 (48%), Gaps = 2/54 (3%)
Query: 130 PIPANGIATRPPERDGPFVFGIHSPSQFPIPRKDDDDYDYSEVTEENGRTVIRD 183
PI A + RP +R P + +SP +F P K+ +Y+ ++ V RD
Sbjct: 489 PIFATRLKLRPHKR--PCAYYSNSPQRFICPSKEPCGLEYNMASDHRTERVFRD 540
>SB_8315| Best HMM Match : Ras (HMM E-Value=0)
Length = 565
Score = 28.3 bits (60), Expect = 7.2
Identities = 13/35 (37%), Positives = 17/35 (48%)
Query: 234 VGDGAVGKSSLIAAYAQDTFREEYQPTAYDTFNGK 268
+GD VGK+SL+ Y F + PT F K
Sbjct: 112 LGDSGVGKTSLLYQYTDSHFNPRFVPTIGIDFREK 146
>SB_45519| Best HMM Match : RNB (HMM E-Value=1.6e-35)
Length = 2748
Score = 28.3 bits (60), Expect = 7.2
Identities = 16/34 (47%), Positives = 20/34 (58%), Gaps = 2/34 (5%)
Query: 231 CVLVGDGAVGKSSLIAAYAQDTFRE-EYQPTAYD 263
CV VG G VGKSS+ Y ++ F E +Y YD
Sbjct: 2602 CV-VGSGGVGKSSVTIRYLKNEFTEIDYCGKLYD 2634
>SB_37516| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 134
Score = 28.3 bits (60), Expect = 7.2
Identities = 14/36 (38%), Positives = 23/36 (63%), Gaps = 3/36 (8%)
Query: 159 IPRKDD-DDYDYSEVTEENGRTVIRDDDSEDLNCCD 193
+P+ DD +DY TEENG+T+++ S ++ CD
Sbjct: 9 MPKIDDHNDYKLISGTEENGKTILK--FSRKIDTCD 42
>SB_26017| Best HMM Match : Extensin_2 (HMM E-Value=0.11)
Length = 1704
Score = 28.3 bits (60), Expect = 7.2
Identities = 13/68 (19%), Positives = 32/68 (47%), Gaps = 2/68 (2%)
Query: 136 IATRPPERDGPFVFGIHSPSQFPIPRKDDDDYDYSEVTEENGRTVIRDDDSEDLNCCDKV 195
++ + +R+ + G HS S P +D+ D E G ++ + +E CC++
Sbjct: 1638 VSPKKLDREPVYQNGEHSASPSPRSTHSNDNSDIGSTFE--GAVKVKTEQNESTECCNRQ 1695
Query: 196 NDWAVRDK 203
+ ++++
Sbjct: 1696 REETLKER 1703
>SB_16515| Best HMM Match : Extensin_2 (HMM E-Value=0.12)
Length = 917
Score = 28.3 bits (60), Expect = 7.2
Identities = 13/41 (31%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
Query: 47 LPAPRNLPDYRTDYRKPSNVELEKRLQESRAREKISYFQDK 87
+P P LP+YR+D + S +R R R+ +Y+ D+
Sbjct: 427 VPRPEPLPEYRSDLERDSYYRESRRRSYFRDRDD-AYYDDR 466
>SB_25039| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 464
Score = 27.9 bits (59), Expect = 9.6
Identities = 14/49 (28%), Positives = 24/49 (48%)
Query: 147 FVFGIHSPSQFPIPRKDDDDYDYSEVTEENGRTVIRDDDSEDLNCCDKV 195
F+ G+H FP + D + ++T +R D++ LNC +KV
Sbjct: 297 FIDGLHPVFGFPEGKSLDVSFTPYQITGCEEGLSVRTSDNKKLNCPEKV 345
>SB_23697| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 248
Score = 27.9 bits (59), Expect = 9.6
Identities = 20/51 (39%), Positives = 25/51 (49%), Gaps = 4/51 (7%)
Query: 51 RNLPDYRTDYRKPSNVELEKRLQESRAREKISYFQDKVTPPELNLDRREAE 101
R LP Y +PS VE + +ESR+ S +DK TPP L E E
Sbjct: 199 RRLP-YTPHAPRPSPVESD---EESRSNSSSSVDRDKETPPPSPLPATERE 245
>SB_18024| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 831
Score = 27.9 bits (59), Expect = 9.6
Identities = 18/46 (39%), Positives = 21/46 (45%), Gaps = 6/46 (13%)
Query: 129 PPIPA---NGIATRPPERDGPFVFGIHSPSQFPIPRKDDDDYDYSE 171
PP P N I PP R G F P P PR+D+ YDY +
Sbjct: 53 PPPPRFYDNDIPPPPPPRRG---FYDDYPPPPPPPRRDEKSYDYDD 95
>SB_6006| Best HMM Match : Annexin (HMM E-Value=2.4e-25)
Length = 803
Score = 27.9 bits (59), Expect = 9.6
Identities = 14/41 (34%), Positives = 21/41 (51%)
Query: 163 DDDDYDYSEVTEENGRTVIRDDDSEDLNCCDKVNDWAVRDK 203
DDDD D +++NGR + + ED +K N A + K
Sbjct: 717 DDDDGDQHNDSDDNGRLKQQSKEKEDAKNTEKDNKKAEKAK 757
>SB_2508| Best HMM Match : RVT_1 (HMM E-Value=1e-05)
Length = 525
Score = 27.9 bits (59), Expect = 9.6
Identities = 14/54 (25%), Positives = 24/54 (44%)
Query: 56 YRTDYRKPSNVELEKRLQESRAREKISYFQDKVTPPELNLDRREAELVFRFDNH 109
Y Y S +++ + E+ + +S FQ + NL+ E EL+ D H
Sbjct: 93 YSRYYSPHSFEQMKSKFTENDKKHNLSVFQSNIRSIRSNLENLENELLGELDYH 146
>SB_44985| Best HMM Match : YhjQ (HMM E-Value=0.37)
Length = 1376
Score = 27.9 bits (59), Expect = 9.6
Identities = 13/34 (38%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
Query: 164 DDDYDYSEVTEENGRTVIRDDDSEDLNCCDKVND 197
DDDYD + ++N DDD++D + C V D
Sbjct: 406 DDDYDDDDDNDDND-IGYDDDDNDDDDVCGNVGD 438
>SB_42885| Best HMM Match : DUF983 (HMM E-Value=9.7)
Length = 152
Score = 27.9 bits (59), Expect = 9.6
Identities = 17/44 (38%), Positives = 25/44 (56%), Gaps = 2/44 (4%)
Query: 162 KDDDDYDYSEVTEENGRTVIRDDDSEDLNCCDKVNDWAVRDKKN 205
KDDDD DY +++ + + D++D N DK ND A +D N
Sbjct: 3 KDDDD-DYDADDDDDNTSFYNNYDNDDDNNDDK-NDDADKDDDN 44
>SB_38760| Best HMM Match : Ras (HMM E-Value=4.6e-06)
Length = 965
Score = 27.9 bits (59), Expect = 9.6
Identities = 12/34 (35%), Positives = 18/34 (52%)
Query: 232 VLVGDGAVGKSSLIAAYAQDTFREEYQPTAYDTF 265
V++G+ VGKS+L + F EY T T+
Sbjct: 865 VIIGEDGVGKSALTVRFLTKRFIGEYDDTLESTY 898
>SB_25550| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 190
Score = 27.9 bits (59), Expect = 9.6
Identities = 14/35 (40%), Positives = 20/35 (57%), Gaps = 2/35 (5%)
Query: 163 DDDDYDYSEVTEENGRTVIRDDDSEDLNCCDKVND 197
DDDD DY +V ++G D D +D+N D + D
Sbjct: 104 DDDDVDYDDVNYDDGD--YDDYDYDDVNYDDVIYD 136
>SB_7861| Best HMM Match : MMR_HSR1 (HMM E-Value=0.96)
Length = 244
Score = 27.9 bits (59), Expect = 9.6
Identities = 13/31 (41%), Positives = 19/31 (61%)
Query: 233 LVGDGAVGKSSLIAAYAQDTFREEYQPTAYD 263
++G AVGK+SL+ A + F E+ PT D
Sbjct: 192 ILGGSAVGKTSLMRALFKKPFTNEHIPTIDD 222
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.316 0.135 0.407
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,994,057
Number of Sequences: 59808
Number of extensions: 459490
Number of successful extensions: 2428
Number of sequences better than 10.0: 64
Number of HSP's better than 10.0 without gapping: 42
Number of HSP's successfully gapped in prelim test: 22
Number of HSP's that attempted gapping in prelim test: 2365
Number of HSP's gapped (non-prelim): 83
length of query: 275
length of database: 16,821,457
effective HSP length: 81
effective length of query: 194
effective length of database: 11,977,009
effective search space: 2323539746
effective search space used: 2323539746
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 59 (27.9 bits)
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