Silkworm BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000216-TA|BGIBMGA000216-PA|undefined
         (166 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF227923-1|AAF36721.1|  351|Tribolium castaneum abdominal-B prot...    23   1.3  
S73225-1|AAB30811.1|  327|Tribolium castaneum protein ( Triboliu...    21   7.0  
AM292322-1|CAL23134.1|  373|Tribolium castaneum gustatory recept...    20   9.2  

>AF227923-1|AAF36721.1|  351|Tribolium castaneum abdominal-B
           protein.
          Length = 351

 Score = 23.0 bits (47), Expect = 1.3
 Identities = 10/25 (40%), Positives = 14/25 (56%)

Query: 76  RQPRFPYESYTKFDLVEEFLCNCGV 100
           R+ R PY  +   +L +EFL N  V
Sbjct: 244 RKKRKPYSKFQTLELEKEFLFNAYV 268


>S73225-1|AAB30811.1|  327|Tribolium castaneum protein ( Tribolium
           castaneum homeodomainprotein mRNA, complete cds. ).
          Length = 327

 Score = 20.6 bits (41), Expect = 7.0
 Identities = 10/40 (25%), Positives = 22/40 (55%)

Query: 11  KAPKYVTLLDPGAYQISDTDTKKWNKIAFNSSTPRNIRNE 50
           ++P+   +  PGA Q + T  +K  + AF+ +    +++E
Sbjct: 207 RSPRTRRVKKPGAKQGAPTAEEKRPRTAFSGAQLARLKHE 246


>AM292322-1|CAL23134.1|  373|Tribolium castaneum gustatory receptor
           candidate 1 protein.
          Length = 373

 Score = 20.2 bits (40), Expect = 9.2
 Identities = 5/13 (38%), Positives = 10/13 (76%)

Query: 47  IRNEKKLWTHAIY 59
           +++EK +W H +Y
Sbjct: 266 VQSEKIVWLHLVY 278


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.320    0.133    0.408 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 41,037
Number of Sequences: 317
Number of extensions: 1581
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of query: 166
length of database: 114,650
effective HSP length: 52
effective length of query: 114
effective length of database: 98,166
effective search space: 11190924
effective search space used: 11190924
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.4 bits)
S2: 40 (20.2 bits)