Silkworm BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000216-TA|BGIBMGA000216-PA|undefined
         (166 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC29A10.14 |rec8||meiotic cohesin complex subunit Rec8|Schizos...    27   1.9  
SPBC211.03c |||guanyl-nucleotide exchange factor|Schizosaccharom...    26   2.5  
SPBC216.05 |rad3||ATR checkpoint kinase|Schizosaccharomyces pomb...    26   2.5  
SPBC3B8.11 |rrn6||RNA polymerase I transcription factor subunit ...    26   3.3  
SPBC21C3.12c |||DUF953 family protein|Schizosaccharomyces pombe|...    25   4.4  
SPAC31A2.05c |mis4||cohesin loading factor Mis4|Schizosaccharomy...    25   4.4  
SPBC776.16 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    25   5.8  
SPBC28F2.07 |sfr1|dds20, mug13|Swi five-dependent recombination ...    25   7.6  

>SPBC29A10.14 |rec8||meiotic cohesin complex subunit
           Rec8|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 561

 Score = 26.6 bits (56), Expect = 1.9
 Identities = 15/57 (26%), Positives = 30/57 (52%), Gaps = 2/57 (3%)

Query: 34  WNKIAFNSSTPRNIRNEKKLWTHA--IYNPEYRKKIPNCPSMMSRQPRFPYESYTKF 88
           WN  + ++S   +  + +    H+  + + +YRK++P+ PSM SR    P    ++F
Sbjct: 396 WNTSSRSNSAINSKSHSQTGSEHSTPLLDTKYRKRLPHSPSMPSRVEFLPALESSQF 452


>SPBC211.03c |||guanyl-nucleotide exchange
           factor|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1462

 Score = 26.2 bits (55), Expect = 2.5
 Identities = 17/56 (30%), Positives = 28/56 (50%), Gaps = 3/56 (5%)

Query: 36  KIAFNSSTPRNIRNEKKLWTHAIYN--PEYRKKIPNCPSMMSRQPRFPYESYTKFD 89
           +I+ + +TP +   E+K +     N  PE R+ I  C   +SR P F  + Y  +D
Sbjct: 418 EISPDRATPTSF-TERKRFAFDTRNRPPEVRELIVECLGSLSRIPYFLIDLYVNYD 472


>SPBC216.05 |rad3||ATR checkpoint kinase|Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 2386

 Score = 26.2 bits (55), Expect = 2.5
 Identities = 13/43 (30%), Positives = 26/43 (60%), Gaps = 1/43 (2%)

Query: 124  KRIFKGLTLQSALCHLVPLQADSKINLKVIKKTSQLLTMKQMN 166
            KR  +G ++ + L H   L   SK+++K + +++ L+T K +N
Sbjct: 1947 KRSLRGKSILNVL-HSRKLSMSSKVDIKALSQSAILITEKLIN 1988


>SPBC3B8.11 |rrn6||RNA polymerase I transcription factor subunit
          Rrn6 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 868

 Score = 25.8 bits (54), Expect = 3.3
 Identities = 15/64 (23%), Positives = 28/64 (43%), Gaps = 2/64 (3%)

Query: 18 LLDPGAYQISD-TDTKKWNKIAFNSSTPRNIRNEKKLWTHAIYNPEYR-KKIPNCPSMMS 75
          LL+P  Y  ++  +  +W    ++S T   + +  K W     NP Y+  K+   P+  +
Sbjct: 27 LLNPSGYHRAEKVENNEWTFARYDSYTGVELVDLDKRWDILSLNPNYKLPKLTELPAEAT 86

Query: 76 RQPR 79
             R
Sbjct: 87 NSTR 90


>SPBC21C3.12c |||DUF953 family protein|Schizosaccharomyces
          pombe|chr 2|||Manual
          Length = 124

 Score = 25.4 bits (53), Expect = 4.4
 Identities = 15/58 (25%), Positives = 29/58 (50%), Gaps = 2/58 (3%)

Query: 42 STPRNIRNEKKLWTHAIYNPEYRKKIPNCPSMMSRQPRF--PYESYTKFDLVEEFLCN 97
          ST  N+   + L+   + + + R K P CP++ +  P F   + S  K ++V  ++ N
Sbjct: 11 STLANVAKNETLFVAYLASVDPRTKQPWCPTVRAALPLFNNAFNSSKKLNVVHVYVGN 68


>SPAC31A2.05c |mis4||cohesin loading factor
          Mis4|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1583

 Score = 25.4 bits (53), Expect = 4.4
 Identities = 10/28 (35%), Positives = 20/28 (71%)

Query: 14 KYVTLLDPGAYQISDTDTKKWNKIAFNS 41
          +YV +L+PGA  ++D++T  + K A ++
Sbjct: 61 RYVDMLNPGATFVNDSETFNFYKNALSA 88


>SPBC776.16 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 253

 Score = 25.0 bits (52), Expect = 5.8
 Identities = 24/129 (18%), Positives = 50/129 (38%), Gaps = 3/129 (2%)

Query: 18  LLDPGAYQISD-TDTKKWNKIAFNSSTPRNIRNEKKLWTHAIYNPEYRKKIPNCPSMMSR 76
           LL    Y++ D  +  +     F+ + P   +N+    ++ I +P Y+ K  +C + ++ 
Sbjct: 88  LLSQNNYRLPDYLEEDEIVSYTFSKTGPTTSKNKHPSHSNTIRSPPYKVKKESCHTEINN 147

Query: 77  QPRFPYESYTKFDLVEEFLCNCGVDNVCTCSMKT--ELVDSVKCQGKIPKRIFKGLTLQS 134
                 ES    D    +     VD++     ++   L +S   Q    +  +      S
Sbjct: 148 VSNVSTESINVIDASRGYSPYTSVDSLSVSKNRSFISLEESASNQYDAAEAFYFNADSSS 207

Query: 135 ALCHLVPLQ 143
            L  L P++
Sbjct: 208 PLRKLSPIE 216


>SPBC28F2.07 |sfr1|dds20, mug13|Swi five-dependent recombination
           repair protein Sfr1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 299

 Score = 24.6 bits (51), Expect = 7.6
 Identities = 12/42 (28%), Positives = 22/42 (52%)

Query: 42  STPRNIRNEKKLWTHAIYNPEYRKKIPNCPSMMSRQPRFPYE 83
           +TP +I+ +K+L+   I N    K  P    ++SR+ +   E
Sbjct: 151 TTPNSIKRQKRLFKSPISNCLNPKSDPEITQLLSRRLKLEKE 192


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.320    0.133    0.408 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 807,293
Number of Sequences: 5004
Number of extensions: 33949
Number of successful extensions: 85
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 81
Number of HSP's gapped (non-prelim): 10
length of query: 166
length of database: 2,362,478
effective HSP length: 68
effective length of query: 98
effective length of database: 2,022,206
effective search space: 198176188
effective search space used: 198176188
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 51 (24.6 bits)