Silkworm BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000216-TA|BGIBMGA000216-PA|undefined
         (166 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    25   0.51 
U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive o...    22   3.6  
AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin ...    22   3.6  
DQ288392-1|ABC41342.1|  120|Apis mellifera nanos protein.              21   8.3  

>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 24.6 bits (51), Expect = 0.51
 Identities = 11/23 (47%), Positives = 14/23 (60%), Gaps = 2/23 (8%)

Query: 13  PKYVTLLDPGAYQISDTDTKKWN 35
           PK+   +D   Y  +D DTKKWN
Sbjct: 365 PKFPRNIDE--YNNNDLDTKKWN 385


>U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive
           opsin protein.
          Length = 377

 Score = 21.8 bits (44), Expect = 3.6
 Identities = 9/26 (34%), Positives = 15/26 (57%), Gaps = 1/26 (3%)

Query: 54  WTHAIYNPEYRKKI-PNCPSMMSRQP 78
           W +AI +P YR+++   C  M   +P
Sbjct: 334 WIYAINHPRYRQELQKRCKWMGIHEP 359


>AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin
           protein.
          Length = 377

 Score = 21.8 bits (44), Expect = 3.6
 Identities = 9/26 (34%), Positives = 15/26 (57%), Gaps = 1/26 (3%)

Query: 54  WTHAIYNPEYRKKI-PNCPSMMSRQP 78
           W +AI +P YR+++   C  M   +P
Sbjct: 334 WIYAINHPRYRQELQKRCKWMGIHEP 359


>DQ288392-1|ABC41342.1|  120|Apis mellifera nanos protein.
          Length = 120

 Score = 20.6 bits (41), Expect = 8.3
 Identities = 7/25 (28%), Positives = 14/25 (56%)

Query: 35 NKIAFNSSTPRNIRNEKKLWTHAIY 59
          + +    +TPR  +N+K L T  ++
Sbjct: 18 DNVTMPETTPRRKKNKKPLPTECVF 42


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.320    0.133    0.408 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 51,193
Number of Sequences: 429
Number of extensions: 1988
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of query: 166
length of database: 140,377
effective HSP length: 53
effective length of query: 113
effective length of database: 117,640
effective search space: 13293320
effective search space used: 13293320
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 41 (20.6 bits)