GeneModel BLAST Result against rice

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000216-TA|BGIBMGA000216-PA|undefined
         (166 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_05_1336 + 35773629-35773856,35773931-35774085,35774217-357745...    29   1.9  
06_03_0766 - 24425486-24426245,24430766-24430855,24430951-244310...    29   2.5  
12_01_0708 - 6137865-6140909                                           27   7.6  
09_02_0535 - 10346395-10346705,10347100-10347175,10348931-103490...    27   7.6  

>02_05_1336 +
           35773629-35773856,35773931-35774085,35774217-35774549,
           35774615-35774927,35776992-35777168,35777281-35777397,
           35777532-35777698,35777800-35778024,35778127-35778448,
           35778542-35778786,35778993-35779131,35779212-35779304,
           35779509-35779577
          Length = 860

 Score = 29.1 bits (62), Expect = 1.9
 Identities = 14/37 (37%), Positives = 20/37 (54%), Gaps = 1/37 (2%)

Query: 48  RNEKKLWTHAIYNPEYRKKIPNCPSMMSRQPRFPYES 84
           R  K+ + H  YN ++RK   N P+ +  QP  P ES
Sbjct: 789 RQAKQHYLHMFYNLQFRKLAKNVPT-LGEQPAQPTES 824


>06_03_0766 -
           24425486-24426245,24430766-24430855,24430951-24431070,
           24431568-24431746,24432046-24432231,24432454-24432547,
           24432679-24432743,24433652-24433987
          Length = 609

 Score = 28.7 bits (61), Expect = 2.5
 Identities = 11/44 (25%), Positives = 23/44 (52%)

Query: 25  QISDTDTKKWNKIAFNSSTPRNIRNEKKLWTHAIYNPEYRKKIP 68
           Q+SD++       +  +  P  + NE+++W + I NP ++   P
Sbjct: 300 QLSDSEVLLQCSTSPAAEPPHFVENERRIWRYLIENPYWQDTFP 343


>12_01_0708 - 6137865-6140909
          Length = 1014

 Score = 27.1 bits (57), Expect = 7.6
 Identities = 13/48 (27%), Positives = 23/48 (47%)

Query: 21  PGAYQISDTDTKKWNKIAFNSSTPRNIRNEKKLWTHAIYNPEYRKKIP 68
           P    ++     K++    +   P +I N KKL   A+YN ++  K+P
Sbjct: 405 PWISNLTSLTVLKFSDCGLSGEIPSSIGNLKKLSMLALYNCKFSGKVP 452


>09_02_0535 -
           10346395-10346705,10347100-10347175,10348931-10349070,
           10349294-10349578,10349677-10349718,10350963-10351461,
           10351557-10351723,10352128-10352412,10352695-10352836
          Length = 648

 Score = 27.1 bits (57), Expect = 7.6
 Identities = 14/58 (24%), Positives = 26/58 (44%), Gaps = 2/58 (3%)

Query: 23  AYQISDTDTKKWNKIAFNSSTPRNIRNEKKLWTHAIYNPEYRKKIPNCPSMMSRQPRF 80
           AY I+      W  + +N ++ RN+     +W + +    +   +    S+ SR PRF
Sbjct: 117 AYLINGAQKTGWLPVDYNMASLRNVTFVLSIWNYCLVLTVHHWTVTQ--SIYSRTPRF 172


  Database: rice
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.320    0.133    0.408 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,665,739
Number of Sequences: 37544
Number of extensions: 180232
Number of successful extensions: 333
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 330
Number of HSP's gapped (non-prelim): 5
length of query: 166
length of database: 14,793,348
effective HSP length: 77
effective length of query: 89
effective length of database: 11,902,460
effective search space: 1059318940
effective search space used: 1059318940
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 57 (27.1 bits)