GeneModel BLAST Result against nematostella

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000216-TA|BGIBMGA000216-PA|undefined
         (166 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_21989| Best HMM Match : Spectrin (HMM E-Value=0)                    28   3.4  
SB_31791| Best HMM Match : PIG-U (HMM E-Value=0.15)                    28   4.5  
SB_642| Best HMM Match : No HMM Matches (HMM E-Value=.)                28   4.5  
SB_44813| Best HMM Match : Crystallin (HMM E-Value=0.26)               27   5.9  
SB_11269| Best HMM Match : Extensin_2 (HMM E-Value=0.14)               27   5.9  
SB_53119| Best HMM Match : Pentaxin (HMM E-Value=1.6e-11)              27   7.8  
SB_53106| Best HMM Match : PLAT (HMM E-Value=0)                        27   7.8  
SB_30326| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.8  

>SB_21989| Best HMM Match : Spectrin (HMM E-Value=0)
          Length = 1805

 Score = 28.3 bits (60), Expect = 3.4
 Identities = 11/50 (22%), Positives = 30/50 (60%)

Query: 105 TCSMKTELVDSVKCQGKIPKRIFKGLTLQSALCHLVPLQADSKINLKVIK 154
           T S+ + ++++    GK+ + + +G +L+  +  L PL  ++ +N +++K
Sbjct: 82  TASIHSLVLNTKDYDGKVSEAVEQGASLEKKIRQLGPLDRENNLNTELLK 131


>SB_31791| Best HMM Match : PIG-U (HMM E-Value=0.15)
          Length = 1366

 Score = 27.9 bits (59), Expect = 4.5
 Identities = 12/41 (29%), Positives = 17/41 (41%)

Query: 39  FNSSTPRNIRNEKKLWTHAIYNPEYRKKIPNCPSMMSRQPR 79
           F +S   NI++E   W + + N        NCP      PR
Sbjct: 816 FGASCSYNIKSEHDFWGYVVCNKTDGLNFTNCPEKYCTVPR 856


>SB_642| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2229

 Score = 27.9 bits (59), Expect = 4.5
 Identities = 17/53 (32%), Positives = 27/53 (50%), Gaps = 3/53 (5%)

Query: 52  KLWTHAIYNPEYRKKIPNCPSM--MSRQPRFPYESYTKF-DLVEEFLCNCGVD 101
           ++ T  I NP +++ I +      + R   FPYE YT+F  L+  F   C +D
Sbjct: 842 RIVTLPIANPHFKEGILSKDKFEFIFRDETFPYEYYTQFVRLLNRFQIACSLD 894


>SB_44813| Best HMM Match : Crystallin (HMM E-Value=0.26)
          Length = 688

 Score = 27.5 bits (58), Expect = 5.9
 Identities = 16/53 (30%), Positives = 24/53 (45%)

Query: 25  QISDTDTKKWNKIAFNSSTPRNIRNEKKLWTHAIYNPEYRKKIPNCPSMMSRQ 77
           QIS      ++ +  NSS  ++I     LW       E RKK P C  ++ R+
Sbjct: 505 QISTQSFSNFSCLVSNSSKTKSIDLGDPLWVRPSTALEVRKKKPECNVIVPRR 557


>SB_11269| Best HMM Match : Extensin_2 (HMM E-Value=0.14)
          Length = 817

 Score = 27.5 bits (58), Expect = 5.9
 Identities = 15/42 (35%), Positives = 22/42 (52%), Gaps = 1/42 (2%)

Query: 10  PKAPKYVTLLD-PGAYQISDTDTKKWNKIAFNSSTPRNIRNE 50
           PK  +Y  LL+ PGAY       +  + +   + +PRN RNE
Sbjct: 216 PKQKRYEELLEKPGAYPTLPRKEETPHPVNTPARSPRNTRNE 257


>SB_53119| Best HMM Match : Pentaxin (HMM E-Value=1.6e-11)
          Length = 315

 Score = 27.1 bits (57), Expect = 7.8
 Identities = 16/55 (29%), Positives = 24/55 (43%), Gaps = 1/55 (1%)

Query: 19  LDPGAYQISDTDTKKWNKIAFNSSTPRNIRNEKKLWTHAIYNPEYRKKIPNCPSM 73
           L  G   I     KK  + A   S   N+ +   +W+H I + E R    +CPS+
Sbjct: 233 LTEGNLVIGQEQDKKAGQFANTQSFLGNVTSVN-IWSHVISDDEVRSLSRDCPSL 286


>SB_53106| Best HMM Match : PLAT (HMM E-Value=0)
          Length = 1790

 Score = 27.1 bits (57), Expect = 7.8
 Identities = 12/38 (31%), Positives = 21/38 (55%)

Query: 125  RIFKGLTLQSALCHLVPLQADSKINLKVIKKTSQLLTM 162
            R+    T+ S +C L  L   S+ N K+++KT+ +  M
Sbjct: 1558 RVINDATIVSIMCALYQLGQKSEKNAKILRKTTGIRRM 1595


>SB_30326| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1346

 Score = 27.1 bits (57), Expect = 7.8
 Identities = 17/53 (32%), Positives = 20/53 (37%), Gaps = 4/53 (7%)

Query: 68  PNCPSMMSRQPRFPYESYTKFDLVEEFLCNCGVDNVCTCSMKTELVDSVKCQG 120
           P CP  +  +PR     Y     VE    N  V  V  C  K E    +KC G
Sbjct: 783 PFCPDGVDLEPRVVKPKYQGHMCVEYLCVNSSVGPVAKCQPKRE----IKCVG 831


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.320    0.133    0.408 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,800,706
Number of Sequences: 59808
Number of extensions: 241112
Number of successful extensions: 471
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 467
Number of HSP's gapped (non-prelim): 8
length of query: 166
length of database: 16,821,457
effective HSP length: 77
effective length of query: 89
effective length of database: 12,216,241
effective search space: 1087245449
effective search space used: 1087245449
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 57 (27.1 bits)