GeneModel BLAST Result against human

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000216-TA|BGIBMGA000216-PA|undefined
         (166 letters)

Database: human 
           224,733 sequences; 73,234,838 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X06256-1|CAA29601.1| 1049|Homo sapiens protein ( Human mRNA for ...    29   7.8  
M13918-1|AAA52467.1| 1034|Homo sapiens fibronectin receptor alph...    29   7.8  
BC008786-1|AAH08786.1| 1049|Homo sapiens integrin, alpha 5 (fibr...    29   7.8  

>X06256-1|CAA29601.1| 1049|Homo sapiens protein ( Human mRNA for
           integrin alpha 5 subunit. ).
          Length = 1049

 Score = 29.1 bits (62), Expect = 7.8
 Identities = 10/36 (27%), Positives = 21/36 (58%)

Query: 77  QPRFPYESYTKFDLVEEFLCNCGVDNVCTCSMKTEL 112
           +P   Y+S ++ +   + L +CG DN+C   ++ E+
Sbjct: 624 RPALHYQSKSRIEDKAQILLDCGEDNICVPDLQLEV 659


>M13918-1|AAA52467.1| 1034|Homo sapiens fibronectin receptor
           alpha-subunit precursor protein.
          Length = 1034

 Score = 29.1 bits (62), Expect = 7.8
 Identities = 10/36 (27%), Positives = 21/36 (58%)

Query: 77  QPRFPYESYTKFDLVEEFLCNCGVDNVCTCSMKTEL 112
           +P   Y+S ++ +   + L +CG DN+C   ++ E+
Sbjct: 609 RPALHYQSKSRIEDKAQILLDCGEDNICVPDLQLEV 644


>BC008786-1|AAH08786.1| 1049|Homo sapiens integrin, alpha 5
           (fibronectin receptor, alpha polypeptide) protein.
          Length = 1049

 Score = 29.1 bits (62), Expect = 7.8
 Identities = 10/36 (27%), Positives = 21/36 (58%)

Query: 77  QPRFPYESYTKFDLVEEFLCNCGVDNVCTCSMKTEL 112
           +P   Y+S ++ +   + L +CG DN+C   ++ E+
Sbjct: 624 RPALHYQSKSRIEDKAQILLDCGEDNICVPDLQLEV 659


  Database: human
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 73,234,838
  Number of sequences in database:  224,733
  
Lambda     K      H
   0.320    0.133    0.408 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,548,821
Number of Sequences: 224733
Number of extensions: 973878
Number of successful extensions: 1661
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 1658
Number of HSP's gapped (non-prelim): 3
length of query: 166
length of database: 73,234,838
effective HSP length: 85
effective length of query: 81
effective length of database: 54,132,533
effective search space: 4384735173
effective search space used: 4384735173
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 62 (29.1 bits)