GeneModel BLAST Result against celegans

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000216-TA|BGIBMGA000216-PA|undefined
         (166 letters)

Database: celegans 
           27,539 sequences; 12,573,161 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF100663-2|AAC68981.2|  532|Caenorhabditis elegans Udp-glucurono...    31   0.55 
U88311-4|AAB42344.1|  537|Caenorhabditis elegans Udp-glucuronosy...    30   0.73 
AC024799-5|AAO25979.1|  474|Caenorhabditis elegans Hypothetical ...    29   1.3  
AC024799-4|AAK72318.1|  536|Caenorhabditis elegans Hypothetical ...    29   1.3  
Z75541-6|CAA99857.2|  644|Caenorhabditis elegans Hypothetical pr...    29   1.7  
U88311-2|AAB42350.2|  529|Caenorhabditis elegans Udp-glucuronosy...    29   1.7  
AF440800-1|AAL28139.1|  644|Caenorhabditis elegans transcription...    29   1.7  
Z70307-5|CAA94331.1|  209|Caenorhabditis elegans Hypothetical pr...    28   2.9  
Z29094-12|CAI06056.1|  235|Caenorhabditis elegans Hypothetical p...    28   3.9  
AL132895-1|CAC14399.1|  601|Caenorhabditis elegans Hypothetical ...    28   3.9  
AF026206-5|AAK39307.1|  141|Caenorhabditis elegans Hypothetical ...    28   3.9  
U28730-5|AAA68259.1|  470|Caenorhabditis elegans Hypothetical pr...    27   5.1  
AF125959-4|AAD14730.2|  532|Caenorhabditis elegans Udp-glucurono...    27   9.0  

>AF100663-2|AAC68981.2|  532|Caenorhabditis elegans
           Udp-glucuronosyltransferase protein19 protein.
          Length = 532

 Score = 30.7 bits (66), Expect = 0.55
 Identities = 12/29 (41%), Positives = 16/29 (55%)

Query: 60  NPEYRKKIPNCPSMMSRQPRFPYESYTKF 88
           NPEYRK       M+  QP  P E++ K+
Sbjct: 435 NPEYRKSAERVAEMLRNQPTNPKETFLKY 463


>U88311-4|AAB42344.1|  537|Caenorhabditis elegans
           Udp-glucuronosyltransferase protein28 protein.
          Length = 537

 Score = 30.3 bits (65), Expect = 0.73
 Identities = 12/52 (23%), Positives = 25/52 (48%)

Query: 37  IAFNSSTPRNIRNEKKLWTHAIYNPEYRKKIPNCPSMMSRQPRFPYESYTKF 88
           I  + ++  N++  +K  T  +Y+  Y+K       ++  QP  P E+  K+
Sbjct: 417 IYLHKNSMENVKVTRKALTDVLYDESYKKNAEKLTDILMNQPYSPMENVIKY 468


>AC024799-5|AAO25979.1|  474|Caenorhabditis elegans Hypothetical
           protein Y49C4A.8b protein.
          Length = 474

 Score = 29.5 bits (63), Expect = 1.3
 Identities = 11/52 (21%), Positives = 27/52 (51%)

Query: 37  IAFNSSTPRNIRNEKKLWTHAIYNPEYRKKIPNCPSMMSRQPRFPYESYTKF 88
           I  + ++  N++  +K +T  +++  Y+K      +++  QP  P E+  K+
Sbjct: 417 IYLHKNSMENVKVTRKAFTDVLFDDSYQKNAEKLANILMNQPYSPKENVIKY 468


>AC024799-4|AAK72318.1|  536|Caenorhabditis elegans Hypothetical
           protein Y49C4A.8a protein.
          Length = 536

 Score = 29.5 bits (63), Expect = 1.3
 Identities = 11/52 (21%), Positives = 27/52 (51%)

Query: 37  IAFNSSTPRNIRNEKKLWTHAIYNPEYRKKIPNCPSMMSRQPRFPYESYTKF 88
           I  + ++  N++  +K +T  +++  Y+K      +++  QP  P E+  K+
Sbjct: 417 IYLHKNSMENVKVTRKAFTDVLFDDSYQKNAEKLANILMNQPYSPKENVIKY 468


>Z75541-6|CAA99857.2|  644|Caenorhabditis elegans Hypothetical
           protein F52B5.5a protein.
          Length = 644

 Score = 29.1 bits (62), Expect = 1.7
 Identities = 19/57 (33%), Positives = 30/57 (52%), Gaps = 6/57 (10%)

Query: 33  KWNKIAFNSSTPRNIR----NEKKLWTHAIYNPEYRKKIPNCPSMMSRQPRFPYESY 85
           K +K  FNS+    IR    ++K+   +AI NP  R  +  C S   R+  FP++S+
Sbjct: 268 KLDKRHFNSNLSLRIRFVKYDKKENVEYAIRNP--RSDVMKCRSHTEREQHFPFDSF 322


>U88311-2|AAB42350.2|  529|Caenorhabditis elegans
           Udp-glucuronosyltransferase protein26 protein.
          Length = 529

 Score = 29.1 bits (62), Expect = 1.7
 Identities = 11/43 (25%), Positives = 21/43 (48%)

Query: 46  NIRNEKKLWTHAIYNPEYRKKIPNCPSMMSRQPRFPYESYTKF 88
           N++  KK     +YN +Y +       M+  QP+ P E+  ++
Sbjct: 426 NVQRVKKAVHDILYNKQYTESAERIAEMIKNQPKTPKETVVRY 468


>AF440800-1|AAL28139.1|  644|Caenorhabditis elegans transcription
           factor CEP-1 protein.
          Length = 644

 Score = 29.1 bits (62), Expect = 1.7
 Identities = 19/57 (33%), Positives = 30/57 (52%), Gaps = 6/57 (10%)

Query: 33  KWNKIAFNSSTPRNIR----NEKKLWTHAIYNPEYRKKIPNCPSMMSRQPRFPYESY 85
           K +K  FNS+    IR    ++K+   +AI NP  R  +  C S   R+  FP++S+
Sbjct: 268 KLDKRHFNSNLSLRIRFVKYDKKENVEYAIRNP--RSDVMKCRSHTEREQHFPFDSF 322


>Z70307-5|CAA94331.1|  209|Caenorhabditis elegans Hypothetical
           protein C39E9.5 protein.
          Length = 209

 Score = 28.3 bits (60), Expect = 2.9
 Identities = 17/46 (36%), Positives = 22/46 (47%), Gaps = 5/46 (10%)

Query: 97  NCGVDNVCTCSMKTELVDSVKCQGKIP-KRIFKGLTLQSALCHLVP 141
           NCG D+V   S K  +V    CQ K+P   +FK +    A C   P
Sbjct: 155 NCGADSVRVGSYKATIV----CQYKVPGNYLFKNIYNSGAKCSACP 196


>Z29094-12|CAI06056.1|  235|Caenorhabditis elegans Hypothetical
           protein C07A9.12 protein.
          Length = 235

 Score = 27.9 bits (59), Expect = 3.9
 Identities = 15/65 (23%), Positives = 26/65 (40%)

Query: 40  NSSTPRNIRNEKKLWTHAIYNPEYRKKIPNCPSMMSRQPRFPYESYTKFDLVEEFLCNCG 99
           +SS P +  N K  W  + Y P+    +     +  + P+F    +      +E +  C 
Sbjct: 112 DSSEPISFGNRKYFWGESKYVPDEELPVQCINKIDPQDPQFGKVFFDNESRPQEIVYACP 171

Query: 100 VDNVC 104
            DN C
Sbjct: 172 ADNNC 176


>AL132895-1|CAC14399.1|  601|Caenorhabditis elegans Hypothetical
           protein Y59A8A.1 protein.
          Length = 601

 Score = 27.9 bits (59), Expect = 3.9
 Identities = 11/30 (36%), Positives = 15/30 (50%)

Query: 69  NCPSMMSRQPRFPYESYTKFDLVEEFLCNC 98
           N P M+ R P  P ++ T   L+E  L  C
Sbjct: 289 NAPYMVERDPNAPIQTLTNRQLIETALAKC 318


>AF026206-5|AAK39307.1|  141|Caenorhabditis elegans Hypothetical
           protein T28B4.3 protein.
          Length = 141

 Score = 27.9 bits (59), Expect = 3.9
 Identities = 15/55 (27%), Positives = 26/55 (47%), Gaps = 3/55 (5%)

Query: 83  ESYTKFDLVEEFLCNCGVDNVCTCSMK--TELVDSVKCQGKIPKRIFKGLTLQSA 135
           + YT  D+      +C  D +  C  K   ++ DS    GK+PK+++    +Q A
Sbjct: 76  KEYTPIDVKLNIYHDCN-DGIKPCQRKFGIKIPDSYTSSGKVPKKVYDAGVIQLA 129


>U28730-5|AAA68259.1|  470|Caenorhabditis elegans Hypothetical
           protein K10B2.2a protein.
          Length = 470

 Score = 27.5 bits (58), Expect = 5.1
 Identities = 12/45 (26%), Positives = 23/45 (51%), Gaps = 1/45 (2%)

Query: 78  PRFPYESYTKFDLVEEFLCNCGVDNVCTCSMKTELVDSVKCQGKI 122
           P + Y +  + DL  +   NC  +N+ TC + ++  D   C+ K+
Sbjct: 213 PFYYYHALVRDDLYNDIARNCCNNNIGTCDIYSKFFDP-NCRDKV 256


>AF125959-4|AAD14730.2|  532|Caenorhabditis elegans
           Udp-glucuronosyltransferase protein13 protein.
          Length = 532

 Score = 26.6 bits (56), Expect = 9.0
 Identities = 10/30 (33%), Positives = 19/30 (63%)

Query: 58  IYNPEYRKKIPNCPSMMSRQPRFPYESYTK 87
           ++NP+Y++K      ++S QP  P E++ K
Sbjct: 438 VFNPKYKEKAELLFDVLSNQPIDPKENFIK 467


  Database: celegans
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 12,573,161
  Number of sequences in database:  27,539
  
Lambda     K      H
   0.320    0.133    0.408 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,349,297
Number of Sequences: 27539
Number of extensions: 182273
Number of successful extensions: 394
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 386
Number of HSP's gapped (non-prelim): 13
length of query: 166
length of database: 12,573,161
effective HSP length: 76
effective length of query: 90
effective length of database: 10,480,197
effective search space: 943217730
effective search space used: 943217730
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 56 (26.6 bits)