GeneModel BLAST Result against arabidopsis

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000216-TA|BGIBMGA000216-PA|undefined
         (166 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g73880.1 68414.m08556 UDP-glucoronosyl/UDP-glucosyl transfera...    29   1.2  
At1g29730.1 68414.m03634 leucine-rich repeat transmembrane prote...    29   1.6  
At1g63770.1 68414.m07217 peptidase M1 family protein similar to ...    29   2.1  
At1g66090.1 68414.m07501 disease resistance protein (TIR-NBS cla...    28   3.7  
At1g09450.1 68414.m01057 haspin-related similar to haspin (GI:92...    28   3.7  
At1g32960.1 68414.m04059 subtilase family protein contains simil...    27   6.4  
At3g49500.1 68416.m05410 RNA-dependent RNA polymerase (SDE1) ide...    27   8.4  

>At1g73880.1 68414.m08556 UDP-glucoronosyl/UDP-glucosyl transferase
           family protein contains Pfam profile: PF00201
           UDP-glucoronosyl and UDP-glucosyl transferase
          Length = 473

 Score = 29.5 bits (63), Expect = 1.2
 Identities = 16/40 (40%), Positives = 19/40 (47%)

Query: 66  KIPNCPSMMSRQPRFPYESYTKFDLVEEFLCNCGVDNVCT 105
           KIPNCP     Q    Y SY   D   EF+ +   DNV +
Sbjct: 178 KIPNCPKYRFDQISSLYRSYVHGDPAWEFIRDSFRDNVAS 217


>At1g29730.1 68414.m03634 leucine-rich repeat transmembrane protein
           kinase, putative contains Pfam domains, PF00560: Leucine
           Rich Repeat and PF00069: Protein kinase domain
          Length = 940

 Score = 29.1 bits (62), Expect = 1.6
 Identities = 11/39 (28%), Positives = 21/39 (53%)

Query: 96  CNCGVDNVCTCSMKTELVDSVKCQGKIPKRIFKGLTLQS 134
           C+C  +N  TC +K  ++      G++P  ++K   L+S
Sbjct: 88  CDCHFNNYSTCHIKHFVLQKFNLPGRLPPMLYKFRHLES 126


>At1g63770.1 68414.m07217 peptidase M1 family protein similar to
           SP|P04825 Aminopeptidase N (EC 3.4.11.2)
           (Alpha-aminoacylpeptide hydrolase) {Escherichia coli};
           contains Pfam profile PF01433: Peptidase family M1
          Length = 918

 Score = 28.7 bits (61), Expect = 2.1
 Identities = 19/53 (35%), Positives = 25/53 (47%), Gaps = 6/53 (11%)

Query: 33  KWNKIAFNSSTPRNIRNEKKLWTHAIYNPEYRKKIPNCPSMMS--RQPRFPYE 83
           KW  +   S  P N+ N KKL  H    P +  + PN  S+ +  R  RFP E
Sbjct: 857 KWFLLQSTSDIPGNVENVKKLLDH----PAFDLRNPNKASLFAYWRVLRFPSE 905


>At1g66090.1 68414.m07501 disease resistance protein (TIR-NBS
           class), putative domain signature TIR-NBS exists,
           suggestive of a disease resistance protein.
          Length = 429

 Score = 27.9 bits (59), Expect = 3.7
 Identities = 12/38 (31%), Positives = 21/38 (55%), Gaps = 3/38 (7%)

Query: 24  YQISDTDTKKWNK---IAFNSSTPRNIRNEKKLWTHAI 58
           Y ++ +D +K      IAFN +  R    E++ W+HA+
Sbjct: 119 YGVNPSDVRKQTGEFGIAFNETCARKTEEERRKWSHAL 156


>At1g09450.1 68414.m01057 haspin-related similar to haspin
           (GI:9229937) {Mus musculus} and haploid germ
           cell-specific nuclear protein kinase (GI:13561418) {Mus
           musculus}
          Length = 599

 Score = 27.9 bits (59), Expect = 3.7
 Identities = 10/27 (37%), Positives = 19/27 (70%)

Query: 134 SALCHLVPLQADSKINLKVIKKTSQLL 160
           S++C +VP+  D ++N +V K+  +LL
Sbjct: 306 SSVCKIVPIDGDFRVNGEVQKRADELL 332


>At1g32960.1 68414.m04059 subtilase family protein contains
           similarity to subtilase; SP1 GI:9957714 [Oryza sativa]
          Length = 777

 Score = 27.1 bits (57), Expect = 6.4
 Identities = 11/46 (23%), Positives = 25/46 (54%), Gaps = 2/46 (4%)

Query: 13  PKYVTLLDPGAYQISDTDTKKWNKIAFNSSTPRNIRNEKKLWTHAI 58
           P+ V ++  G ++++ T T  W  +  +S+ P+N+ N+  +    I
Sbjct: 97  PEVVHVIPDGFHELATTRT--WEYLGLSSANPKNLLNDTNMGDQVI 140


>At3g49500.1 68416.m05410 RNA-dependent RNA polymerase (SDE1)
            identical to RNA-dependent RNA polymerase [Arabidopsis
            thaliana] gi|8248473|gb|AAF74208
          Length = 1196

 Score = 26.6 bits (56), Expect = 8.4
 Identities = 13/28 (46%), Positives = 16/28 (57%), Gaps = 2/28 (7%)

Query: 41   SSTPRNIRNEKKL--WTHAIYNPEYRKK 66
            S   +NI  EKK   W H  Y+PE+ KK
Sbjct: 1113 SEEEKNILYEKKASAWYHVTYHPEWVKK 1140


  Database: arabidopsis
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.320    0.133    0.408 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,049,820
Number of Sequences: 28952
Number of extensions: 166201
Number of successful extensions: 339
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 335
Number of HSP's gapped (non-prelim): 7
length of query: 166
length of database: 12,070,560
effective HSP length: 76
effective length of query: 90
effective length of database: 9,870,208
effective search space: 888318720
effective search space used: 888318720
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 56 (26.6 bits)