GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000215-TA|BGIBMGA000215-PA|IPR002159|CD36 antigen
         (483 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC12B10.01c ||SPAC31F12.02c, SPAC637.15c|ubiquitin-protein lig...    27   7.7  
SPBPB10D8.04c |||membrane transporter |Schizosaccharomyces pombe...    27   7.7  
SPBPB10D8.05c |||membrane transporter |Schizosaccharomyces pombe...    27   7.7  
SPBPB10D8.06c |||membrane transporter |Schizosaccharomyces pombe...    27   7.7  
SPBPB10D8.07c |||membrane transporter |Schizosaccharomyces pombe...    27   7.7  

>SPAC12B10.01c ||SPAC31F12.02c, SPAC637.15c|ubiquitin-protein ligase
           E3 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1647

 Score = 26.6 bits (56), Expect = 7.7
 Identities = 14/41 (34%), Positives = 22/41 (53%)

Query: 315 KAPMFVSMPHYLEGDPELLKNVKGLNPNAKDHGIEIDFEPI 355
           K  +F S    L+G P+L+K+ KG+ P  K   I   +E +
Sbjct: 101 KTRVFKSFNEKLKGKPQLVKSDKGVLPLNKQSDILNSYERV 141


>SPBPB10D8.04c |||membrane transporter |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 379

 Score = 26.6 bits (56), Expect = 7.7
 Identities = 16/61 (26%), Positives = 28/61 (45%), Gaps = 4/61 (6%)

Query: 368 FNIQLLKSEKMELLKDLPGTIVPLLWIEEGLSLN----KTFVKMLKSQLFIPKRVVSVVC 423
           F+  L K  K+E    LP  ++P++ +    S      +TF   L  ++ +   V S +C
Sbjct: 137 FSTILTKRAKIEFSTFLPTILLPIVPLTVAASTGSVVIETFSTRLNKKIILNTIVTSFIC 196

Query: 424 W 424
           W
Sbjct: 197 W 197


>SPBPB10D8.05c |||membrane transporter |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 379

 Score = 26.6 bits (56), Expect = 7.7
 Identities = 16/61 (26%), Positives = 28/61 (45%), Gaps = 4/61 (6%)

Query: 368 FNIQLLKSEKMELLKDLPGTIVPLLWIEEGLSLN----KTFVKMLKSQLFIPKRVVSVVC 423
           F+  L K  K+E    LP  ++P++ +    S      +TF   L  ++ +   V S +C
Sbjct: 137 FSTILTKRAKIEFSTFLPTILLPIVPLTVAASTGSVVIETFSTRLNKKIILNTIVTSFIC 196

Query: 424 W 424
           W
Sbjct: 197 W 197


>SPBPB10D8.06c |||membrane transporter |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 379

 Score = 26.6 bits (56), Expect = 7.7
 Identities = 16/61 (26%), Positives = 28/61 (45%), Gaps = 4/61 (6%)

Query: 368 FNIQLLKSEKMELLKDLPGTIVPLLWIEEGLSLN----KTFVKMLKSQLFIPKRVVSVVC 423
           F+  L K  K+E    LP  ++P++ +    S      +TF   L  ++ +   V S +C
Sbjct: 137 FSTILTKRAKIEFSTFLPTILLPIVPLTVAASTGSVVIETFSTRLNKKIILNTIVTSFIC 196

Query: 424 W 424
           W
Sbjct: 197 W 197


>SPBPB10D8.07c |||membrane transporter |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 379

 Score = 26.6 bits (56), Expect = 7.7
 Identities = 16/61 (26%), Positives = 28/61 (45%), Gaps = 4/61 (6%)

Query: 368 FNIQLLKSEKMELLKDLPGTIVPLLWIEEGLSLN----KTFVKMLKSQLFIPKRVVSVVC 423
           F+  L K  K+E    LP  ++P++ +    S      +TF   L  ++ +   V S +C
Sbjct: 137 FSTILTKRAKIEFSTFLPTILLPIVPLTVAASTGSVVIETFSTRLNKKIILNTIVTSFIC 196

Query: 424 W 424
           W
Sbjct: 197 W 197


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.321    0.139    0.421 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,256,928
Number of Sequences: 5004
Number of extensions: 97303
Number of successful extensions: 203
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 202
Number of HSP's gapped (non-prelim): 5
length of query: 483
length of database: 2,362,478
effective HSP length: 75
effective length of query: 408
effective length of database: 1,987,178
effective search space: 810768624
effective search space used: 810768624
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 56 (26.6 bits)