GeneModel BLAST Result against rice

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000215-TA|BGIBMGA000215-PA|IPR002159|CD36 antigen
         (483 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_01_1035 + 8998266-8998349,8999394-8999441,8999714-8999792,899...    34   0.29 
12_01_0610 + 5030130-5030247,5030957-5033193                           29   6.2  
01_01_1209 - 9738501-9738516,9738703-9739161,9739389-9739608,973...    29   8.2  

>07_01_1035 +
           8998266-8998349,8999394-8999441,8999714-8999792,
           8999874-8999978,9000219-9000328,9000510-9000691,
           9000909-9000978,9001066-9001239,9001373-9001477,
           9001684-9001815,9002062-9002157,9002273-9002572
          Length = 494

 Score = 33.9 bits (74), Expect = 0.29
 Identities = 18/42 (42%), Positives = 24/42 (57%), Gaps = 5/42 (11%)

Query: 78  LFKPELSGPGLTGEEV-----IVMPNIFMMAMALTVYREKPA 114
           LF P LSGPG TG+ +     +VMP+   +  AL + R  PA
Sbjct: 179 LFIPRLSGPGATGDSIALLGALVMPHNLFLHSALVLSRNTPA 220


>12_01_0610 + 5030130-5030247,5030957-5033193
          Length = 784

 Score = 29.5 bits (63), Expect = 6.2
 Identities = 22/85 (25%), Positives = 39/85 (45%), Gaps = 1/85 (1%)

Query: 330 PELLKNVKGLNPNAKDHGIEIDFEPISGTPMVAKQRIQFNIQLLKSEKMELLKDLPGTIV 389
           P LL ++   NP+++   + ID   +S     + Q   F + L KSE  +L K+     +
Sbjct: 395 PHLLSSLLKPNPSSRSEDVGIDMTEVSDDEDESDQLPPFRV-LKKSEYEKLSKEQRSAYL 453

Query: 390 PLLWIEEGLSLNKTFVKMLKSQLFI 414
             L   E L L K + + ++ Q  +
Sbjct: 454 DELDYRETLYLKKQWKEGIRRQKLV 478


>01_01_1209 -
           9738501-9738516,9738703-9739161,9739389-9739608,
           9739708-9739831,9739927-9740635,9741826-9742132,
           9742213-9743704
          Length = 1108

 Score = 29.1 bits (62), Expect = 8.2
 Identities = 33/108 (30%), Positives = 49/108 (45%), Gaps = 9/108 (8%)

Query: 375 SEKMELLKDLPGTIVPLLWIEEGLSLNKTFVKMLKSQLFIPKRVVSVVCWCMIS-FGSVG 433
           ++  EL  +  G  V L  I +G SL       L+ +LF   R  SVV  C ++     G
Sbjct: 802 TQSPELASESAG--VTLALIVDGNSLVYILETELQEELFKVARECSVVLCCRVAPLQKAG 859

Query: 434 VIAAMIFHFKGDIMHLAVA-GDNSVSKIKPENEENKEVGVMGQNQEPA 480
           ++A  +   + D M LA+  G N VS I+     +  VG+ GQ    A
Sbjct: 860 IVA--LIKNRTDDMTLAIGDGANDVSMIQ---MADVGVGISGQEGRQA 902


  Database: rice
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.321    0.139    0.421 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,749,956
Number of Sequences: 37544
Number of extensions: 574747
Number of successful extensions: 925
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 924
Number of HSP's gapped (non-prelim): 4
length of query: 483
length of database: 14,793,348
effective HSP length: 85
effective length of query: 398
effective length of database: 11,602,108
effective search space: 4617638984
effective search space used: 4617638984
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 62 (29.1 bits)