Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000215-TA|BGIBMGA000215-PA|IPR002159|CD36 antigen
(483 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_47539| Best HMM Match : No HMM Matches (HMM E-Value=.) 149 6e-36
SB_7098| Best HMM Match : No HMM Matches (HMM E-Value=.) 77 4e-14
SB_38947| Best HMM Match : CD36 (HMM E-Value=1.4e-15) 70 4e-12
SB_21457| Best HMM Match : efhand (HMM E-Value=1.7e-29) 49 7e-06
SB_50699| Best HMM Match : No HMM Matches (HMM E-Value=.) 48 1e-05
SB_44848| Best HMM Match : COQ7 (HMM E-Value=1.6) 30 4.8
SB_5675| Best HMM Match : Chromo (HMM E-Value=0.42) 30 4.8
SB_4999| Best HMM Match : EGF_CA (HMM E-Value=0) 29 6.3
SB_50644| Best HMM Match : Chromo (HMM E-Value=0.47) 29 8.3
SB_44442| Best HMM Match : Chromo (HMM E-Value=0.47) 29 8.3
SB_40397| Best HMM Match : Chromo (HMM E-Value=0.47) 29 8.3
SB_38702| Best HMM Match : Chromo (HMM E-Value=0.47) 29 8.3
SB_31092| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 8.3
SB_20074| Best HMM Match : Chromo (HMM E-Value=0.47) 29 8.3
SB_13845| Best HMM Match : Chromo (HMM E-Value=0.47) 29 8.3
SB_48137| Best HMM Match : Chromo (HMM E-Value=0.47) 29 8.3
SB_46024| Best HMM Match : Chromo (HMM E-Value=0.47) 29 8.3
SB_43070| Best HMM Match : Chromo (HMM E-Value=0.47) 29 8.3
SB_34672| Best HMM Match : Chromo (HMM E-Value=0.47) 29 8.3
SB_28130| Best HMM Match : Chromo (HMM E-Value=0.47) 29 8.3
SB_24474| Best HMM Match : Chromo (HMM E-Value=0.47) 29 8.3
SB_20843| Best HMM Match : Chromo (HMM E-Value=0.47) 29 8.3
SB_1471| Best HMM Match : Chromo (HMM E-Value=0.47) 29 8.3
>SB_47539| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 515
Score = 149 bits (360), Expect = 6e-36
Identities = 108/440 (24%), Positives = 198/440 (45%), Gaps = 28/440 (6%)
Query: 11 KMWEKIPFALDFKIYLFNYTNAEDIQKGAVPIVKEVGPFYFXXXXXXXXXXXXXGNDTIN 70
K W++ P + + ++FN N + + G+ +V + GP+ + N T+
Sbjct: 60 KQWKEPPIPIYLQFFIFNVVNEMEAKNGSPLVVAQQGPYSYREYRRKENITWCKMNSTVT 119
Query: 71 YKKIDVFLFKPELSGPGLTG-EEVIVMPNIFMMAMALTVYREKPAMLNVAAKAINGIFDS 129
Y + F+F P S ++V+ N+ ++ +A + K + + +FD
Sbjct: 120 YNEKQWFVFDPATSCNTCDPYKDVVTTVNVPLVTLAGVLKNLKDTFH--WKELVTLLFDE 177
Query: 130 PSDVFMRVKALDILFRGI--IINCDRTEFAPKAACTTIKKEAPNGIVFEPNNQLRFSLFG 187
S+ + + + G + E+ K + I I + NN +
Sbjct: 178 FSETLFEKRTVHEMLWGYNDTMLMKYNEYRDKFHLSGILPAINPTIALQKNNTYQ----- 232
Query: 188 VRNNSVDPHVVTVKRGVQNVMDVGRVVAIDGKTKMNVWRDS-CNEYQGTDGTVFPPFLTH 246
+ +V GV+++ + GK + VW S N GTDGT F P ++
Sbjct: 233 --------GLTSVSTGVKDINSIVEWQEWKGKHSLGVWNSSYANMINGTDGTQFSPGIST 284
Query: 247 KDRLQSFSGDLCRSFKPWFQKKTSYNGIKTNRYVANIGDFAN---DPELQCYCDSPDKCP 303
D L F LCRS + K T+ +GI T ++ + N + +C KC
Sbjct: 285 DDTLFVFVTQLCRSLFLTYDKSTTIHGIDTYQFTTPSSLYLNASLNGNNAAFCTK--KCY 342
Query: 304 PKGLMDLYKC----IKAPMFVSMPHYLEGDPELLKNVKGLNPNAKDHGIEIDFEPISGTP 359
P G++D+ C I P+FVS PH+ GDP L N+KGL+P+ ++HG +D E G P
Sbjct: 343 PTGILDISVCQDAPISIPLFVSAPHFYLGDPSLRCNIKGLSPSKEEHGTFLDVETDLGIP 402
Query: 360 MVAKQRIQFNIQLLKSEKMELLKDLPGTIVPLLWIEEGLSLNKTFVKMLKSQLFIPKRVV 419
+ + +R+Q NI + E ++ + L +P+L+I E +++ M+K ++ +P +V
Sbjct: 403 LSSGKRLQINIFIEPVEDIKQTQGLGSLFLPILYINETATIDSATADMIKGKVLLPFKVA 462
Query: 420 SVVCWCMISFGSVGVIAAMI 439
V + +I+ G V ++ A++
Sbjct: 463 HGVEFAVIAIGLVLIVVAIV 482
>SB_7098| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 200
Score = 76.6 bits (180), Expect = 4e-14
Identities = 36/125 (28%), Positives = 65/125 (52%)
Query: 314 IKAPMFVSMPHYLEGDPELLKNVKGLNPNAKDHGIEIDFEPISGTPMVAKQRIQFNIQLL 373
+ +P+ +S PH+L GDP+L VKGL P+ + HG+ I EP +G P+ A R+Q N+ +
Sbjct: 35 VTSPIVISTPHFLLGDPQLRTQVKGLKPDREKHGLYISIEPTTGIPLQALIRLQINVFIQ 94
Query: 374 KSEKMELLKDLPGTIVPLLWIEEGLSLNKTFVKMLKSQLFIPKRVVSVVCWCMISFGSVG 433
+ +P VP++ S++ + + L+ L + V + + G V
Sbjct: 95 SVPGISETTGIPQAFVPVMHFSNNASVDDSTARTLREGLVVQLLVAKYAEMVVFALGGVF 154
Query: 434 VIAAM 438
++AA+
Sbjct: 155 ILAAI 159
>SB_38947| Best HMM Match : CD36 (HMM E-Value=1.4e-15)
Length = 314
Score = 70.1 bits (164), Expect = 4e-12
Identities = 62/255 (24%), Positives = 105/255 (41%), Gaps = 16/255 (6%)
Query: 7 TDVRKMWEKIPFALDFKIYLFNYTNAEDIQKGAVPIVKEVGPFYFXXXXXXXXXXXXXGN 66
TD K W + ++Y+F+ N ++++ GA P+++E+GP+ +
Sbjct: 49 TDRYKQWIFPTVPIHIELYVFHVVNPDEVRSGATPVIRELGPYTYREYLLKENITFNQDE 108
Query: 67 DTINYKKIDVFLFKPELSGPGLTGEEVIVMPNIFMMAMALTVYREKPAMLNVAAKAINGI 126
++Y + ++F PELS G E V A+ V + ++ V A+ +
Sbjct: 109 TLVSYNQKKWYVFTPELSCSGCDPEADSVTTVNIAYAIMTEVAKSYSRIVRVGIDAL--L 166
Query: 127 FDSPSDVFMRVKALDILFRGIIINCDRTEFAPKAACTTIKKEAPNGIVFEPNNQLRFSLF 186
+FM ++L+ D FA + K + + F P L
Sbjct: 167 KYEKEHLFMTRTVREVLW-----GYDDPLFAEFS-----KLKDMFNLKFLPEIS---PLI 213
Query: 187 GVRNNSVDPHVVTVKRGVQNVMDVGRVVAIDGKTKMNVWRDS-CNEYQGTDGTVFPPFLT 245
+ N + TV G +N+ +A G++ M +W S N G+DGT FPP
Sbjct: 214 TMEYNETYDGISTVNTGTKNMDRTLDWIAWKGQSSMGLWNSSYANMINGSDGTQFPPGSG 273
Query: 246 HKDRLQSFSGDLCRS 260
D L FS +LCRS
Sbjct: 274 PGDTLYFFSTNLCRS 288
>SB_21457| Best HMM Match : efhand (HMM E-Value=1.7e-29)
Length = 420
Score = 49.2 bits (112), Expect = 7e-06
Identities = 35/122 (28%), Positives = 57/122 (46%), Gaps = 11/122 (9%)
Query: 303 PPKGLMDLYKCIKAPMFVSMPHYLEGDPELLKNVKGLNPNAKDHGIEIDFEPISGTPMVA 362
P G+ D+ PM S+P +L +P L + + P + + +D EP+SG + A
Sbjct: 93 PLDGVFDMSSFSGLPMSTSLPGFLTAEPILYQQMNLSKPTDERYLNFLDVEPVSGRVLNA 152
Query: 363 KQRIQFN-------IQLLKSEKMELL---KDLP-GTIVPLLWIEEGLSLNKTFVKMLKSQ 411
K R Q N I + + + + + D P VP++W E G + K+ + LK Q
Sbjct: 153 KLRFQVNAIIPGNAINVTRIQPLNISARDDDQPYRKYVPIMWTESGGEIGKSDAEALKKQ 212
Query: 412 LF 413
LF
Sbjct: 213 LF 214
>SB_50699| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 450
Score = 48.4 bits (110), Expect = 1e-05
Identities = 22/58 (37%), Positives = 34/58 (58%), Gaps = 2/58 (3%)
Query: 299 PDKCPPKGLMDLYKCI--KAPMFVSMPHYLEGDPELLKNVKGLNPNAKDHGIEIDFEP 354
P C P GL++L +C P+ VS PH+ + + L+K V+G++P +H ID EP
Sbjct: 231 PPGCLPTGLLNLTRCQPQNPPVAVSPPHFYQSNSSLVKAVRGMHPVKSEHATFIDIEP 288
Score = 29.5 bits (63), Expect = 6.3
Identities = 18/84 (21%), Positives = 34/84 (40%), Gaps = 2/84 (2%)
Query: 25 YLFNYTNAEDIQKGA-VPIVKEVGPFYFXXXXXXXXXXXXXGNDTINYKKIDVFLFKPEL 83
++F+ N ++ G+ +P V E GP+ + + + F+F PE
Sbjct: 4 FVFDLQNPAEVMNGSELPYVIERGPYSYKETRSVDILNYSADKSIVTFMPNRTFIFDPET 63
Query: 84 SGPGLTG-EEVIVMPNIFMMAMAL 106
S G + NI ++ +AL
Sbjct: 64 SCKGCNDTTDTFTNVNIPLLTLAL 87
>SB_44848| Best HMM Match : COQ7 (HMM E-Value=1.6)
Length = 340
Score = 29.9 bits (64), Expect = 4.8
Identities = 13/36 (36%), Positives = 22/36 (61%), Gaps = 2/36 (5%)
Query: 324 HYLEGDPELLKNVK--GLNPNAKDHGIEIDFEPISG 357
HYL+ + E LKN++ LN K G+ + + P++G
Sbjct: 33 HYLQNENESLKNIQRASLNTGVKYSGLVLTYGPLTG 68
>SB_5675| Best HMM Match : Chromo (HMM E-Value=0.42)
Length = 215
Score = 29.9 bits (64), Expect = 4.8
Identities = 20/86 (23%), Positives = 39/86 (45%), Gaps = 4/86 (4%)
Query: 160 AACTTIKKEAPNGIVFEPNNQLRFSLFGVRNNSVDPHVVTVKRGVQNVMDVGRVVAIDGK 219
AA T K I+ +P+ +++ + ++SVD +V K + V ++ RV+ ++G
Sbjct: 2 AANTDSLKTRSGRIIKKPDRLVKY----LDHSSVDTYVKEEKEEEEKVWEIERVLNVEGD 57
Query: 220 TKMNVWRDSCNEYQGTDGTVFPPFLT 245
W+ + Y T P L+
Sbjct: 58 YAFVKWKGYSDRYNSTVSLSLNPHLS 83
>SB_4999| Best HMM Match : EGF_CA (HMM E-Value=0)
Length = 1054
Score = 29.5 bits (63), Expect = 6.3
Identities = 16/55 (29%), Positives = 22/55 (40%), Gaps = 1/55 (1%)
Query: 285 DFANDP-ELQCYCDSPDKCPPKGLMDLYKCIKAPMFVSMPHYLEGDPELLKNVKG 338
D N P LQC C + K P C+ V P+ GD + +N +G
Sbjct: 522 DCINLPGSLQCKCPAGQKWDPDSFYGTGGCVDLNECVETPYVCSGDNSICQNTEG 576
>SB_50644| Best HMM Match : Chromo (HMM E-Value=0.47)
Length = 215
Score = 29.1 bits (62), Expect = 8.3
Identities = 20/86 (23%), Positives = 39/86 (45%), Gaps = 4/86 (4%)
Query: 160 AACTTIKKEAPNGIVFEPNNQLRFSLFGVRNNSVDPHVVTVKRGVQNVMDVGRVVAIDGK 219
AA T K I+ +P+ +++ + ++SVD +V K + V ++ RV+ ++G
Sbjct: 2 AANTDSLKTRSGRIIKKPDRLVKY----LDHSSVDTYVKEEKEEEEKVWEIERVLNVEGD 57
Query: 220 TKMNVWRDSCNEYQGTDGTVFPPFLT 245
W+ + Y T P L+
Sbjct: 58 YAFVKWKGYSDRYNSTVSLSLNPQLS 83
>SB_44442| Best HMM Match : Chromo (HMM E-Value=0.47)
Length = 215
Score = 29.1 bits (62), Expect = 8.3
Identities = 20/86 (23%), Positives = 39/86 (45%), Gaps = 4/86 (4%)
Query: 160 AACTTIKKEAPNGIVFEPNNQLRFSLFGVRNNSVDPHVVTVKRGVQNVMDVGRVVAIDGK 219
AA T K I+ +P+ +++ + ++SVD +V K + V ++ RV+ ++G
Sbjct: 2 AANTDSLKTRSGRIIKKPDRLVKY----LDHSSVDTYVKEEKEEEEKVWEIERVLNVEGD 57
Query: 220 TKMNVWRDSCNEYQGTDGTVFPPFLT 245
W+ + Y T P L+
Sbjct: 58 YAFVKWKGYSDRYNSTVSLSLNPQLS 83
>SB_40397| Best HMM Match : Chromo (HMM E-Value=0.47)
Length = 155
Score = 29.1 bits (62), Expect = 8.3
Identities = 20/86 (23%), Positives = 39/86 (45%), Gaps = 4/86 (4%)
Query: 160 AACTTIKKEAPNGIVFEPNNQLRFSLFGVRNNSVDPHVVTVKRGVQNVMDVGRVVAIDGK 219
AA T K I+ +P+ +++ + ++SVD +V K + V ++ RV+ ++G
Sbjct: 2 AANTDSLKTRSGRIIKKPDRLVKY----LDHSSVDTYVKEEKEEEEKVWEIERVLNVEGD 57
Query: 220 TKMNVWRDSCNEYQGTDGTVFPPFLT 245
W+ + Y T P L+
Sbjct: 58 YAFVKWKGYSDRYNSTVSLSLNPQLS 83
>SB_38702| Best HMM Match : Chromo (HMM E-Value=0.47)
Length = 155
Score = 29.1 bits (62), Expect = 8.3
Identities = 20/86 (23%), Positives = 39/86 (45%), Gaps = 4/86 (4%)
Query: 160 AACTTIKKEAPNGIVFEPNNQLRFSLFGVRNNSVDPHVVTVKRGVQNVMDVGRVVAIDGK 219
AA T K I+ +P+ +++ + ++SVD +V K + V ++ RV+ ++G
Sbjct: 2 AANTDSLKTRSGRIIKKPDRLVKY----LDHSSVDTYVKEEKEEEEKVWEIERVLNVEGD 57
Query: 220 TKMNVWRDSCNEYQGTDGTVFPPFLT 245
W+ + Y T P L+
Sbjct: 58 YAFVKWKGYSDRYNSTVSLSLNPQLS 83
>SB_31092| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1032
Score = 29.1 bits (62), Expect = 8.3
Identities = 20/86 (23%), Positives = 39/86 (45%), Gaps = 4/86 (4%)
Query: 160 AACTTIKKEAPNGIVFEPNNQLRFSLFGVRNNSVDPHVVTVKRGVQNVMDVGRVVAIDGK 219
AA T K I+ +P+ +++ + ++SVD +V K + V ++ RV+ ++G
Sbjct: 2 AANTDSLKTRSGRIIKKPDRLVKY----LDHSSVDTYVKEEKEEEEKVWEIERVLNVEGD 57
Query: 220 TKMNVWRDSCNEYQGTDGTVFPPFLT 245
W+ + Y T P L+
Sbjct: 58 YAFVKWKGYSDRYNSTVSLSLNPQLS 83
>SB_20074| Best HMM Match : Chromo (HMM E-Value=0.47)
Length = 189
Score = 29.1 bits (62), Expect = 8.3
Identities = 20/86 (23%), Positives = 39/86 (45%), Gaps = 4/86 (4%)
Query: 160 AACTTIKKEAPNGIVFEPNNQLRFSLFGVRNNSVDPHVVTVKRGVQNVMDVGRVVAIDGK 219
AA T K I+ +P+ +++ + ++SVD +V K + V ++ RV+ ++G
Sbjct: 2 AANTDSLKTRSGRIIKKPDRLVKY----LDHSSVDTYVKEEKEEEEKVWEIERVLNVEGD 57
Query: 220 TKMNVWRDSCNEYQGTDGTVFPPFLT 245
W+ + Y T P L+
Sbjct: 58 YAFVKWKGYSDRYNSTVSLSLNPQLS 83
>SB_13845| Best HMM Match : Chromo (HMM E-Value=0.47)
Length = 97
Score = 29.1 bits (62), Expect = 8.3
Identities = 20/86 (23%), Positives = 39/86 (45%), Gaps = 4/86 (4%)
Query: 160 AACTTIKKEAPNGIVFEPNNQLRFSLFGVRNNSVDPHVVTVKRGVQNVMDVGRVVAIDGK 219
AA T K I+ +P+ +++ + ++SVD +V K + V ++ RV+ ++G
Sbjct: 2 AANTDSLKTRSGRIIKKPDRLVKY----LDHSSVDTYVKEEKEEEEKVWEIERVLNVEGD 57
Query: 220 TKMNVWRDSCNEYQGTDGTVFPPFLT 245
W+ + Y T P L+
Sbjct: 58 YAFVKWKGYSDRYNSTVSLSLNPQLS 83
>SB_48137| Best HMM Match : Chromo (HMM E-Value=0.47)
Length = 155
Score = 29.1 bits (62), Expect = 8.3
Identities = 20/86 (23%), Positives = 39/86 (45%), Gaps = 4/86 (4%)
Query: 160 AACTTIKKEAPNGIVFEPNNQLRFSLFGVRNNSVDPHVVTVKRGVQNVMDVGRVVAIDGK 219
AA T K I+ +P+ +++ + ++SVD +V K + V ++ RV+ ++G
Sbjct: 2 AANTDSLKTRSGRIIKKPDRLVKY----LDHSSVDTYVKEEKEEEEKVWEIERVLNVEGD 57
Query: 220 TKMNVWRDSCNEYQGTDGTVFPPFLT 245
W+ + Y T P L+
Sbjct: 58 YAFVKWKGYSDRYNSTVSLSLNPQLS 83
>SB_46024| Best HMM Match : Chromo (HMM E-Value=0.47)
Length = 215
Score = 29.1 bits (62), Expect = 8.3
Identities = 20/86 (23%), Positives = 39/86 (45%), Gaps = 4/86 (4%)
Query: 160 AACTTIKKEAPNGIVFEPNNQLRFSLFGVRNNSVDPHVVTVKRGVQNVMDVGRVVAIDGK 219
AA T K I+ +P+ +++ + ++SVD +V K + V ++ RV+ ++G
Sbjct: 2 AANTDSLKTRSGRIIKKPDRLVKY----LDHSSVDTYVKEEKEEEEKVWEIERVLNVEGD 57
Query: 220 TKMNVWRDSCNEYQGTDGTVFPPFLT 245
W+ + Y T P L+
Sbjct: 58 YAFVKWKGYSDRYNSTVSLSLNPQLS 83
>SB_43070| Best HMM Match : Chromo (HMM E-Value=0.47)
Length = 96
Score = 29.1 bits (62), Expect = 8.3
Identities = 20/86 (23%), Positives = 39/86 (45%), Gaps = 4/86 (4%)
Query: 160 AACTTIKKEAPNGIVFEPNNQLRFSLFGVRNNSVDPHVVTVKRGVQNVMDVGRVVAIDGK 219
AA T K I+ +P+ +++ + ++SVD +V K + V ++ RV+ ++G
Sbjct: 2 AANTDSLKTRSGRIIKKPDRLVKY----LDHSSVDTYVKEEKEEEEKVWEIERVLNVEGD 57
Query: 220 TKMNVWRDSCNEYQGTDGTVFPPFLT 245
W+ + Y T P L+
Sbjct: 58 YAFVKWKGYSDRYNSTVSLSLNPQLS 83
>SB_34672| Best HMM Match : Chromo (HMM E-Value=0.47)
Length = 215
Score = 29.1 bits (62), Expect = 8.3
Identities = 20/86 (23%), Positives = 39/86 (45%), Gaps = 4/86 (4%)
Query: 160 AACTTIKKEAPNGIVFEPNNQLRFSLFGVRNNSVDPHVVTVKRGVQNVMDVGRVVAIDGK 219
AA T K I+ +P+ +++ + ++SVD +V K + V ++ RV+ ++G
Sbjct: 2 AANTDSLKTRSGRIIKKPDRLVKY----LDHSSVDTYVKEEKEEEEKVWEIERVLNVEGD 57
Query: 220 TKMNVWRDSCNEYQGTDGTVFPPFLT 245
W+ + Y T P L+
Sbjct: 58 YAFVKWKGYSDRYNSTVSLSLNPQLS 83
>SB_28130| Best HMM Match : Chromo (HMM E-Value=0.47)
Length = 215
Score = 29.1 bits (62), Expect = 8.3
Identities = 20/86 (23%), Positives = 39/86 (45%), Gaps = 4/86 (4%)
Query: 160 AACTTIKKEAPNGIVFEPNNQLRFSLFGVRNNSVDPHVVTVKRGVQNVMDVGRVVAIDGK 219
AA T K I+ +P+ +++ + ++SVD +V K + V ++ RV+ ++G
Sbjct: 2 AANTDSLKTRSGRIIKKPDRLVKY----LDHSSVDTYVKEEKEEEEKVWEIERVLNVEGD 57
Query: 220 TKMNVWRDSCNEYQGTDGTVFPPFLT 245
W+ + Y T P L+
Sbjct: 58 YAFVKWKGYSDRYNSTVSLSLNPQLS 83
>SB_24474| Best HMM Match : Chromo (HMM E-Value=0.47)
Length = 155
Score = 29.1 bits (62), Expect = 8.3
Identities = 20/86 (23%), Positives = 39/86 (45%), Gaps = 4/86 (4%)
Query: 160 AACTTIKKEAPNGIVFEPNNQLRFSLFGVRNNSVDPHVVTVKRGVQNVMDVGRVVAIDGK 219
AA T K I+ +P+ +++ + ++SVD +V K + V ++ RV+ ++G
Sbjct: 2 AANTDSLKTRSGRIIKKPDRLVKY----LDHSSVDTYVKEEKEEEEKVWEIERVLNVEGD 57
Query: 220 TKMNVWRDSCNEYQGTDGTVFPPFLT 245
W+ + Y T P L+
Sbjct: 58 YAFVKWKGYSDRYNSTVSLSLNPQLS 83
>SB_20843| Best HMM Match : Chromo (HMM E-Value=0.47)
Length = 215
Score = 29.1 bits (62), Expect = 8.3
Identities = 20/86 (23%), Positives = 39/86 (45%), Gaps = 4/86 (4%)
Query: 160 AACTTIKKEAPNGIVFEPNNQLRFSLFGVRNNSVDPHVVTVKRGVQNVMDVGRVVAIDGK 219
AA T K I+ +P+ +++ + ++SVD +V K + V ++ RV+ ++G
Sbjct: 2 AANTDSLKTRSGRIIKKPDRLVKY----LDHSSVDTYVKEEKEEEEKVWEIERVLNVEGD 57
Query: 220 TKMNVWRDSCNEYQGTDGTVFPPFLT 245
W+ + Y T P L+
Sbjct: 58 YAFVKWKGYSDRYNSTVSLSLNPQLS 83
>SB_1471| Best HMM Match : Chromo (HMM E-Value=0.47)
Length = 236
Score = 29.1 bits (62), Expect = 8.3
Identities = 20/86 (23%), Positives = 39/86 (45%), Gaps = 4/86 (4%)
Query: 160 AACTTIKKEAPNGIVFEPNNQLRFSLFGVRNNSVDPHVVTVKRGVQNVMDVGRVVAIDGK 219
AA T K I+ +P+ +++ + ++SVD +V K + V ++ RV+ ++G
Sbjct: 2 AANTDSLKTRSGRIIKKPDRLVKY----LDHSSVDTYVKEEKEEEEKVWEIERVLNVEGD 57
Query: 220 TKMNVWRDSCNEYQGTDGTVFPPFLT 245
W+ + Y T P L+
Sbjct: 58 YAFVKWKGYSDRYNSTVSLSLNPQLS 83
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.321 0.139 0.421
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,945,375
Number of Sequences: 59808
Number of extensions: 662220
Number of successful extensions: 1128
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 17
Number of HSP's that attempted gapping in prelim test: 1114
Number of HSP's gapped (non-prelim): 26
length of query: 483
length of database: 16,821,457
effective HSP length: 85
effective length of query: 398
effective length of database: 11,737,777
effective search space: 4671635246
effective search space used: 4671635246
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 62 (29.1 bits)
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