GeneModel BLAST Result against arabidopsis

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000215-TA|BGIBMGA000215-PA|IPR002159|CD36 antigen
         (483 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g68010.1 68414.m07769 glycerate dehydrogenase / NADH-dependen...    31   1.7  
At3g19320.1 68416.m02450 leucine-rich repeat family protein cont...    29   9.1  

>At1g68010.1 68414.m07769 glycerate dehydrogenase / NADH-dependent
           hydroxypyruvate reductase identical to hydroxypyruvate
           reductase (HPR) GB:D85339 [Arabidopsis thaliana] (Plant
           Cell Physiol 1997 Apr;38(4):449-55)
          Length = 386

 Score = 31.1 bits (67), Expect = 1.7
 Identities = 23/86 (26%), Positives = 38/86 (44%), Gaps = 5/86 (5%)

Query: 147 IIINCDRTEFAPKAACTTIKKEAPN---GI-VFEPNNQLRFSLFGVRNNSVDPHVVTVKR 202
           I++NC R     +AA     KE P    G+ VFE    ++  L   +N  V PH+ +  +
Sbjct: 267 ILVNCSRGPVIDEAALVEHLKENPMFRVGLDVFEEEPFMKPGLADTKNAIVVPHIASASK 326

Query: 203 GVQNVMDVGRVVAIDGKTK-MNVWRD 227
             +  M     + + G+ K   +W D
Sbjct: 327 WTREGMATLAALNVLGRVKGYPIWHD 352


>At3g19320.1 68416.m02450 leucine-rich repeat family protein
           contains leucine-rich repeats, Pfam:PF00560;
          Length = 493

 Score = 28.7 bits (61), Expect = 9.1
 Identities = 20/65 (30%), Positives = 33/65 (50%), Gaps = 1/65 (1%)

Query: 317 PMFVSMPHYLEGDPE-LLKNVKGLNPNAKDHGIEIDFEPISGTPMVAKQRIQFNIQLLKS 375
           P+  +    +E DP+ +LK   G +  A+D  I ++   + GT  +A   IQFN   L  
Sbjct: 129 PVIKNFQTLIEDDPKSILKTWVGTDICAQDKYIGLECAKLPGTNDLALASIQFNNFNLGG 188

Query: 376 EKMEL 380
           +K+ L
Sbjct: 189 KKLRL 193


  Database: arabidopsis
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.321    0.139    0.421 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,640,863
Number of Sequences: 28952
Number of extensions: 503185
Number of successful extensions: 913
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 913
Number of HSP's gapped (non-prelim): 2
length of query: 483
length of database: 12,070,560
effective HSP length: 84
effective length of query: 399
effective length of database: 9,638,592
effective search space: 3845798208
effective search space used: 3845798208
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 61 (28.7 bits)