Silkworm BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000214-TA|BGIBMGA000214-PA|undefined
         (69 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    21   1.8  
AJ245824-1|CAB76374.1|  399|Apis mellifera G-protein coupled rec...    20   2.4  
EF531707-1|ABP57431.1|  138|Apis mellifera structural cuticle pr...    20   3.2  
X91509-1|CAA62809.1|  103|Apis mellifera histone H4 protein.           19   4.2  
AJ555537-1|CAD88245.1|  210|Apis mellifera putative chemosensory...    19   7.3  
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    18   9.7  

>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 20.6 bits (41), Expect = 1.8
 Identities = 9/16 (56%), Positives = 10/16 (62%), Gaps = 2/16 (12%)

Query: 46  DLRVQKHRFWIRKPRV 61
           DLR+  HR W  KP V
Sbjct: 97  DLRIPPHRLW--KPDV 110


>AJ245824-1|CAB76374.1|  399|Apis mellifera G-protein coupled
           receptor protein.
          Length = 399

 Score = 20.2 bits (40), Expect = 2.4
 Identities = 10/33 (30%), Positives = 16/33 (48%)

Query: 29  GPGGRTPARRSQGRIAPDLRVQKHRFWIRKPRV 61
           G GG T +RR+ G  A       ++F   + R+
Sbjct: 285 GGGGTTSSRRTTGSRAAATTTTVYQFIEERQRI 317


>EF531707-1|ABP57431.1|  138|Apis mellifera structural cuticle
          protein protein.
          Length = 138

 Score = 19.8 bits (39), Expect = 3.2
 Identities = 14/39 (35%), Positives = 18/39 (46%), Gaps = 3/39 (7%)

Query: 10 NNFDITNLIYGSGKGAPKTGPGGRTP--ARRSQGRIAPD 46
          NNF+ +N I     G PK      TP  ++ S    APD
Sbjct: 44 NNFETSNGISHQESGQPKQ-VDNETPVVSQGSDSYTAPD 81


>X91509-1|CAA62809.1|  103|Apis mellifera histone H4 protein.
          Length = 103

 Score = 19.4 bits (38), Expect = 4.2
 Identities = 9/22 (40%), Positives = 10/22 (45%)

Query: 20 GSGKGAPKTGPGGRTPARRSQG 41
          G GKG    G GG    R+  G
Sbjct: 3  GRGKGGKGLGKGGAKRHRKVLG 24


>AJ555537-1|CAD88245.1|  210|Apis mellifera putative chemosensory
           receptor 2 protein.
          Length = 210

 Score = 18.6 bits (36), Expect = 7.3
 Identities = 9/29 (31%), Positives = 14/29 (48%)

Query: 29  GPGGRTPARRSQGRIAPDLRVQKHRFWIR 57
           GP G T  +    R A    V++H+  +R
Sbjct: 87  GPNGLTKKQEMLVRSAIKYWVERHKHIVR 115


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 18.2 bits (35), Expect = 9.7
 Identities = 8/26 (30%), Positives = 15/26 (57%)

Query: 17  LIYGSGKGAPKTGPGGRTPARRSQGR 42
           L+ G  + +    P G TPA++++ R
Sbjct: 372 LLSGRSQKSTTGPPPGPTPAQKARMR 397


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.320    0.141    0.441 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,944
Number of Sequences: 429
Number of extensions: 899
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of query: 69
length of database: 140,377
effective HSP length: 45
effective length of query: 24
effective length of database: 121,072
effective search space:  2905728
effective search space used:  2905728
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 35 (19.0 bits)
S2: 35 (18.2 bits)