Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000214-TA|BGIBMGA000214-PA|undefined
(69 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC417.09c |||transcription factor |Schizosaccharomyces pombe|c... 28 0.13
SPAC24B11.07c |||ketopantoate reductase |Schizosaccharomyces pom... 25 1.6
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe... 25 1.6
SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr... 24 2.1
SPCC4G3.14 |mdj1||DNAJ domain protein Mdj1 |Schizosaccharomyces ... 24 2.1
SPAP27G11.13c |nop10||small nucleolar ribonucleoprotein Nop10|Sc... 24 2.8
SPCC1223.14 ||SPCC297.01|chorismate synthase |Schizosaccharomyce... 23 3.8
SPAC869.04 |||formamidase-like protein|Schizosaccharomyces pombe... 23 5.0
SPAC6F6.03c |||ribosome export GTPase|Schizosaccharomyces pombe|... 22 8.7
SPCC777.04 |||amino acid transporter |Schizosaccharomyces pombe|... 22 8.7
SPCC1529.01 ||SPCC794.14|membrane transporter|Schizosaccharomyce... 22 8.7
>SPCC417.09c |||transcription factor |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 767
Score = 28.3 bits (60), Expect = 0.13
Identities = 17/55 (30%), Positives = 25/55 (45%), Gaps = 3/55 (5%)
Query: 7 ERGNNFDITNLIYGSGKGAPKTGP---GGRTPARRSQGRIAPDLRVQKHRFWIRK 58
ERG N + + + +TG GG P RR RI P R++K ++ K
Sbjct: 32 ERGGNVVVGSSSANANASTAETGKKSAGGSKPKRRRGERIPPSKRIRKAIAYVNK 86
>SPAC24B11.07c |||ketopantoate reductase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 561
Score = 24.6 bits (51), Expect = 1.6
Identities = 12/43 (27%), Positives = 19/43 (44%), Gaps = 1/43 (2%)
Query: 26 PKTGPGGRTPARRSQGRIAPDLRVQKHR-FWIRKPRVQRPSDP 67
P+ P G P R + ++P+ + H+ R PSDP
Sbjct: 437 PRFAPRGSPPVRGGKNVLSPEAKEHTHKNISPESSRFGTPSDP 479
>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 273
Score = 24.6 bits (51), Expect = 1.6
Identities = 8/14 (57%), Positives = 9/14 (64%)
Query: 19 YGSGKGAPKTGPGG 32
+G G G P GPGG
Sbjct: 193 FGGGSGGPPPGPGG 206
>SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 305
Score = 24.2 bits (50), Expect = 2.1
Identities = 10/22 (45%), Positives = 13/22 (59%)
Query: 20 GSGKGAPKTGPGGRTPARRSQG 41
G G+G + G GGR AR +G
Sbjct: 37 GGGRGGARGGRGGRGGARGGRG 58
>SPCC4G3.14 |mdj1||DNAJ domain protein Mdj1 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 528
Score = 24.2 bits (50), Expect = 2.1
Identities = 16/57 (28%), Positives = 28/57 (49%), Gaps = 2/57 (3%)
Query: 2 IVITIERGNNFDITNLIYGSGKGAPKTGPGGRTPARRSQGRIAPDLRVQKHRFWIRK 58
+ I I G + + + G+G A T GG A+ G + + V+KH F++R+
Sbjct: 311 VSIDIPPGIDDNTVLRVMGAGNDA-STAKGGPN-AKSRPGDLFATIHVRKHPFFVRE 365
>SPAP27G11.13c |nop10||small nucleolar ribonucleoprotein
Nop10|Schizosaccharomyces pombe|chr 1|||Manual
Length = 64
Score = 23.8 bits (49), Expect = 2.8
Identities = 9/32 (28%), Positives = 15/32 (46%)
Query: 27 KTGPGGRTPARRSQGRIAPDLRVQKHRFWIRK 58
K P GR R +PD + + R+ ++K
Sbjct: 19 KVSPDGRVTKSSHPARFSPDDKYSRQRYTLKK 50
>SPCC1223.14 ||SPCC297.01|chorismate synthase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 395
Score = 23.4 bits (48), Expect = 3.8
Identities = 10/29 (34%), Positives = 16/29 (55%)
Query: 24 GAPKTGPGGRTPARRSQGRIAPDLRVQKH 52
G + GGR+ AR + GR+A +K+
Sbjct: 114 GVKASSGGGRSSARETIGRVAAGAIAEKY 142
>SPAC869.04 |||formamidase-like protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 410
Score = 23.0 bits (47), Expect = 5.0
Identities = 12/27 (44%), Positives = 13/27 (48%)
Query: 7 ERGNNFDITNLIYGSGKGAPKTGPGGR 33
E G N DI NL GS P PG +
Sbjct: 222 ENGGNCDIKNLSRGSKVFLPVHVPGAK 248
>SPAC6F6.03c |||ribosome export GTPase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 537
Score = 22.2 bits (45), Expect = 8.7
Identities = 14/44 (31%), Positives = 16/44 (36%), Gaps = 1/44 (2%)
Query: 18 IYGSGKGAPKTGPGGRTPARRSQGRIAPDLRVQKHRFWIRKPRV 61
+Y GK A G A Q P R+Q R W RV
Sbjct: 43 MYRGGK-AKYNAAGELVRAAEFQSSEVPKARIQPDRRWFNNTRV 85
>SPCC777.04 |||amino acid transporter |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 521
Score = 22.2 bits (45), Expect = 8.7
Identities = 9/17 (52%), Positives = 10/17 (58%)
Query: 15 TNLIYGSGKGAPKTGPG 31
T L+ GSG K GPG
Sbjct: 62 TGLVIGSGSALLKGGPG 78
>SPCC1529.01 ||SPCC794.14|membrane transporter|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 462
Score = 22.2 bits (45), Expect = 8.7
Identities = 12/33 (36%), Positives = 17/33 (51%)
Query: 17 LIYGSGKGAPKTGPGGRTPARRSQGRIAPDLRV 49
LI+GS R RR+ G++AP+ RV
Sbjct: 326 LIFGSQASGIFIDKTFRYLKRRNNGKMAPEFRV 358
Database: spombe
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.320 0.141 0.441
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 345,952
Number of Sequences: 5004
Number of extensions: 11722
Number of successful extensions: 21
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 13
Number of HSP's gapped (non-prelim): 11
length of query: 69
length of database: 2,362,478
effective HSP length: 49
effective length of query: 20
effective length of database: 2,117,282
effective search space: 42345640
effective search space used: 42345640
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 45 (22.2 bits)
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