GeneModel BLAST Result against nematostella

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000214-TA|BGIBMGA000214-PA|undefined
         (69 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_23918| Best HMM Match : rve (HMM E-Value=0.013)                     27   2.8  
SB_59487| Best HMM Match : DUF1014 (HMM E-Value=2.4)                   26   4.9  
SB_57096| Best HMM Match : No HMM Matches (HMM E-Value=.)              25   6.4  
SB_58276| Best HMM Match : MIB_HERC2 (HMM E-Value=8.3e-33)             25   8.5  

>SB_23918| Best HMM Match : rve (HMM E-Value=0.013)
          Length = 1785

 Score = 26.6 bits (56), Expect = 2.8
 Identities = 16/48 (33%), Positives = 22/48 (45%), Gaps = 1/48 (2%)

Query: 23   KGAPKTG-PGGRTPARRSQGRIAPDLRVQKHRFWIRKPRVQRPSDPQP 69
            K AP+   P G T A+R  G   PD +          P V+R + P+P
Sbjct: 1158 KAAPQMEEPQGSTSAQRPYGSAEPDKQAAHEPARTPLPLVERITSPEP 1205


>SB_59487| Best HMM Match : DUF1014 (HMM E-Value=2.4)
          Length = 176

 Score = 25.8 bits (54), Expect = 4.9
 Identities = 10/22 (45%), Positives = 14/22 (63%)

Query: 22  GKGAPKTGPGGRTPARRSQGRI 43
           G G+   G GGR P +RS+ +I
Sbjct: 139 GSGSESDGQGGRRPKKRSRKKI 160


>SB_57096| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 442

 Score = 25.4 bits (53), Expect = 6.4
 Identities = 15/41 (36%), Positives = 19/41 (46%), Gaps = 1/41 (2%)

Query: 30  PGGRTPARRSQGRIAPDLRVQKHRFWIRK-PRVQRPSDPQP 69
           P GR P+RR   R  P  R+   R   R+ P  + PS   P
Sbjct: 64  PSGRLPSRRLPSRRLPSRRLPSRRLPSRRLPSRRLPSGRLP 104



 Score = 25.4 bits (53), Expect = 6.4
 Identities = 17/49 (34%), Positives = 21/49 (42%), Gaps = 4/49 (8%)

Query: 21  SGKGAPKTGPGGRTPARRSQGRIAPDLRVQKHRFWIRKPRVQRPSDPQP 69
           SG+   +  P GR P+RR      P  R+   R     P  Q PS P P
Sbjct: 372 SGRLPSRRLPSGRLPSRRFPSGRLPSRRLPSGRL----PSRQLPSGPLP 416


>SB_58276| Best HMM Match : MIB_HERC2 (HMM E-Value=8.3e-33)
          Length = 2822

 Score = 25.0 bits (52), Expect = 8.5
 Identities = 8/25 (32%), Positives = 15/25 (60%)

Query: 7    ERGNNFDITNLIYGSGKGAPKTGPG 31
            E+  NF + +++  SG+  P+ G G
Sbjct: 1527 EQARNFSLLSMVQSSGENIPRGGSG 1551


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.320    0.141    0.441 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,830,944
Number of Sequences: 59808
Number of extensions: 110834
Number of successful extensions: 160
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 144
Number of HSP's gapped (non-prelim): 16
length of query: 69
length of database: 16,821,457
effective HSP length: 48
effective length of query: 21
effective length of database: 13,950,673
effective search space: 292964133
effective search space used: 292964133
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 52 (25.0 bits)