GeneModel BLAST Result against celegans

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000214-TA|BGIBMGA000214-PA|undefined
         (69 letters)

Database: celegans 
           27,539 sequences; 12,573,161 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF026212-3|AAF99974.2| 1172|Caenorhabditis elegans Hypothetical ...    28   0.70 
Z68108-19|CAD44153.1| 1895|Caenorhabditis elegans Hypothetical p...    27   2.1  
Z68108-18|CAB60299.4| 1868|Caenorhabditis elegans Hypothetical p...    27   2.1  
Z68108-17|CAB60298.3| 1898|Caenorhabditis elegans Hypothetical p...    27   2.1  
Z50740-6|CAD44124.1| 1895|Caenorhabditis elegans Hypothetical pr...    27   2.1  
Z50740-5|CAB60282.4| 1868|Caenorhabditis elegans Hypothetical pr...    27   2.1  
Z50740-4|CAB60281.3| 1898|Caenorhabditis elegans Hypothetical pr...    27   2.1  
AL117193-13|CAB55004.2|  478|Caenorhabditis elegans Hypothetical...    27   2.1  
AF044576-1|AAC38963.1| 1898|Caenorhabditis elegans phospholipase...    27   2.1  
Z75540-1|CAA99847.2| 1227|Caenorhabditis elegans Hypothetical pr...    25   8.6  

>AF026212-3|AAF99974.2| 1172|Caenorhabditis elegans Hypothetical
           protein F52G3.1 protein.
          Length = 1172

 Score = 28.3 bits (60), Expect = 0.70
 Identities = 16/46 (34%), Positives = 23/46 (50%), Gaps = 1/46 (2%)

Query: 10  NNFDITNLIYGSGKGAPKTGPGGRTPARRSQGRIAPDLRVQKHRFW 55
           N  + +NL   SG GAP+ G  GR P  ++    A  +  Q+ R W
Sbjct: 887 NMMNFSNLKRQSGYGAPENGLLGRIPNSQAAAAAAV-VAAQQQRIW 931


>Z68108-19|CAD44153.1| 1895|Caenorhabditis elegans Hypothetical
           protein F31B12.1c protein.
          Length = 1895

 Score = 26.6 bits (56), Expect = 2.1
 Identities = 11/21 (52%), Positives = 12/21 (57%)

Query: 21  SGKGAPKTGPGGRTPARRSQG 41
           SG+GAP   P GRTP     G
Sbjct: 423 SGRGAPSPMPSGRTPGTGGVG 443


>Z68108-18|CAB60299.4| 1868|Caenorhabditis elegans Hypothetical
           protein F31B12.1b protein.
          Length = 1868

 Score = 26.6 bits (56), Expect = 2.1
 Identities = 11/21 (52%), Positives = 12/21 (57%)

Query: 21  SGKGAPKTGPGGRTPARRSQG 41
           SG+GAP   P GRTP     G
Sbjct: 423 SGRGAPSPMPSGRTPGTGGVG 443


>Z68108-17|CAB60298.3| 1898|Caenorhabditis elegans Hypothetical
           protein F31B12.1a protein.
          Length = 1898

 Score = 26.6 bits (56), Expect = 2.1
 Identities = 11/21 (52%), Positives = 12/21 (57%)

Query: 21  SGKGAPKTGPGGRTPARRSQG 41
           SG+GAP   P GRTP     G
Sbjct: 423 SGRGAPSPMPSGRTPGTGGVG 443


>Z50740-6|CAD44124.1| 1895|Caenorhabditis elegans Hypothetical
           protein F31B12.1c protein.
          Length = 1895

 Score = 26.6 bits (56), Expect = 2.1
 Identities = 11/21 (52%), Positives = 12/21 (57%)

Query: 21  SGKGAPKTGPGGRTPARRSQG 41
           SG+GAP   P GRTP     G
Sbjct: 423 SGRGAPSPMPSGRTPGTGGVG 443


>Z50740-5|CAB60282.4| 1868|Caenorhabditis elegans Hypothetical
           protein F31B12.1b protein.
          Length = 1868

 Score = 26.6 bits (56), Expect = 2.1
 Identities = 11/21 (52%), Positives = 12/21 (57%)

Query: 21  SGKGAPKTGPGGRTPARRSQG 41
           SG+GAP   P GRTP     G
Sbjct: 423 SGRGAPSPMPSGRTPGTGGVG 443


>Z50740-4|CAB60281.3| 1898|Caenorhabditis elegans Hypothetical
           protein F31B12.1a protein.
          Length = 1898

 Score = 26.6 bits (56), Expect = 2.1
 Identities = 11/21 (52%), Positives = 12/21 (57%)

Query: 21  SGKGAPKTGPGGRTPARRSQG 41
           SG+GAP   P GRTP     G
Sbjct: 423 SGRGAPSPMPSGRTPGTGGVG 443


>AL117193-13|CAB55004.2|  478|Caenorhabditis elegans Hypothetical
           protein Y105C5A.24 protein.
          Length = 478

 Score = 26.6 bits (56), Expect = 2.1
 Identities = 10/23 (43%), Positives = 15/23 (65%)

Query: 26  PKTGPGGRTPARRSQGRIAPDLR 48
           PK+ PGGR+P    +  I PD++
Sbjct: 323 PKSQPGGRSPLPLPKTEITPDVK 345


>AF044576-1|AAC38963.1| 1898|Caenorhabditis elegans phospholipase C
           PLC210 protein.
          Length = 1898

 Score = 26.6 bits (56), Expect = 2.1
 Identities = 11/21 (52%), Positives = 12/21 (57%)

Query: 21  SGKGAPKTGPGGRTPARRSQG 41
           SG+GAP   P GRTP     G
Sbjct: 423 SGRGAPSPMPSGRTPGTGGVG 443


>Z75540-1|CAA99847.2| 1227|Caenorhabditis elegans Hypothetical protein
            F37D6.1 protein.
          Length = 1227

 Score = 24.6 bits (51), Expect = 8.6
 Identities = 12/23 (52%), Positives = 16/23 (69%)

Query: 5    TIERGNNFDITNLIYGSGKGAPK 27
            TIER  N D+T+LI  + + APK
Sbjct: 1017 TIEREFNKDVTHLIASNMQRAPK 1039


  Database: celegans
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 12,573,161
  Number of sequences in database:  27,539
  
Lambda     K      H
   0.320    0.141    0.441 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,998,884
Number of Sequences: 27539
Number of extensions: 76052
Number of successful extensions: 122
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 112
Number of HSP's gapped (non-prelim): 10
length of query: 69
length of database: 12,573,161
effective HSP length: 49
effective length of query: 20
effective length of database: 11,223,750
effective search space: 224475000
effective search space used: 224475000
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 51 (24.6 bits)